Motif J5_15259.1 Version J5_15259.1 of this group appears in releases 3.91 to 3.97
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 13 | break | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | break | 22 | 23 | 24 | 25 | 26 | 27 | 28 | break | 29 | 30 | 31 | 32 | 33 | 1-33 | 5-11 | 6-10 | 6-15 | 7-8 | 9-11 | 10-15 | 12-18 | 13-14 | 19-32 | 21-22 | 27-31 | 28-29 | |||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J5_7A0S_006 | 7A0S | 0.0000 | 4 | X | LSU rRNA | A | 2040 | A | 2041 | A | 2042 | A | 2043 | G | 2044 | C | 2046 | C | 2047 | * | G | 2425 | G | 2426 | A | 2429 | A | 2430 | C | 2431 | A | 2432 | * | U | 2479 | C | 2480 | G | 2481 | A | 2482 | U | 2483 | G | 2484 | U | 2485 | C | 2486 | * | G | 2561 | G | 2562 | U | 2563 | U | 2564 | C | 2565 | A | 2566 | G | 2567 | * | C | 2585 | G | 2586 | G | 2587 | C | 2589 | U | 2590 | cWW | ncWW | cWW | ntWS | cWW | ntHH | tHW | cWW | cWW | ntWW | cWW | ntHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AAAAGACC*GGAUAACA*UCGAUGUC*GGUUCAG*CGGUCU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAAGAC*GAUAAC*CGAUGU*GUUCA*GGUC | 1 |
Release history
| Release | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 | 3.96 | 3.97 |
|---|---|---|---|---|---|---|---|
| Date | 2024-12-04 | 2025-01-01 | 2025-01-29 | 2025-02-26 | 2025-03-26 | 2025-04-23 | 2025-05-21 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (1)
- Basepair signature
- cWW-F-F-F-F-F-F-F-cWW-cWW-cWW-F-F-F-F-tHW-F-F-F-cWW-cWW-cWW-F-F-F-F
- Heat map statistics
- Min 0.00 | Avg 0.00 | Max 0.00
Coloring options: