Motif J5_21810.1 Version J5_21810.1 of this group appears in releases 3.95 to 3.98
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | break | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | break | 24 | 25 | 26 | 27 | 28 | 29 | 30 | break | 31 | 32 | 33 | 34 | 1-34 | 5-12 | 6-11 | 6-19 | 7-8 | 8-10 | 9-12 | 11-19 | 15-16 | 22-27 | 23-24 | 29-33 | 30-31 | ||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J5_8CRE_005 | 8CRE | 0.0000 | 6 | 1 | LSU rRNA | A | 2377 | G | 2378 | A | 2379 | A | 2380 | G | 2381 | C | 2383 | C | 2384 | * | G | 2787 | G | 2788 | U | 2790 | A | 2791 | A | 2792 | C | 2793 | U | 2794 | G | 2795 | * | C | 2839 | U | 2840 | U | 2841 | C | 2842 | G | 2843 | A | 2844 | U | 2847 | C | 2848 | * | G | 2923 | G | 2924 | U | 2925 | U | 2926 | U | 2927 | A | 2928 | G | 2929 | * | U | 2947 | A | 2948 | G | 2949 | U | 2952 | cWW | ncWW | cWW | ntWS | cWW | ntSW | ntHH | ntHW | cWW | ntWWa | cWW | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAGAC*GAUAACU*UUCGAUGU*GUUUA*AGUU | 1 |
- Annotations
-
- (1)
- Basepair signature
- cWW-F-tHS-F-F-F-cWW-F-cWW-cWW-F-F-F-F-F-F-cWW-F-F-F-F-F-cWW-F-F-F-F
- Heat map statistics
- Min 0.00 | Avg 0.00 | Max 0.00
Coloring options: