Motif J5_39529.1 Version J5_39529.1 of this group appears in releases 3.95 to 3.97
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | break | 8 | 9 | break | 10 | 11 | break | 12 | 13 | 14 | 15 | 16 | 1-16 | 2-3 | 3-4 | 3-15 | 4-15 | 5-16 | 7-8 | 9-10 | 11-12 | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J5_9DFE_007 | 9DFE | 0.1069 | 5 | 1A | LSU rRNA | U | 2074 | U | 2075 | A | 2077 | * | U | 2243 | U | 2244 | U | 2245 | G | 2246 | * | C | 2258 | G | 2259 | * | C | 2281 | G | 2282 | * | C | 2427 | A | 2432 | A | 2433 | A | 2434 | A | 2435 | cWW | cWH | cWW | ncsS | ntsS | cWH | cWW | cWW | cWW |
| 2 | J5_7A0S_007 | 7A0S | 0.0000 | 5 | X | LSU rRNA | U | 2057 | U | 2058 | A | 2060 | * | U | 2222 | U | 2223 | U | 2224 | G | 2225 | * | C | 2237 | G | 2238 | * | C | 2260 | G | 2261 | * | C | 2406 | A | 2411 | A | 2412 | A | 2413 | A | 2414 | cWW | cWH | cWW | cWH | cWW | cWW | cWW | ||
| 3 | J5_4WF9_007 | 4WF9 | 0.0806 | 5 | X | LSU rRNA | U | 2101 | U | 2102 | A | 2104 | * | U | 2270 | U | 2271 | U | 2272 | G | 2273 | * | C | 2285 | G | 2286 | * | C | 2308 | G | 2309 | * | C | 2454 | A | 2459 | A | 2460 | A | 2461 | A | 2462 | cWW | cWH | cWW | cWH | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUUA*UUUG*CG*CG*CGGAUAAAA | 3 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UU*UU***GGAUAAA | 3 |
- Annotations
-
- (3)
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Heat map statistics
- Min 0.08 | Avg 0.07 | Max 0.11
Coloring options: