Motif J5_39529.2 Version J5_39529.2 of this group appears in releases 4.0 to 4.14
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | break | 8 | 9 | break | 10 | 11 | break | 12 | 13 | 14 | 15 | 16 | 1-16 | 2-3 | 3-4 | 3-15 | 4-15 | 5-16 | 7-8 | 9-10 | 11-12 | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J5_9DFE_007 | 9DFE | 0.1046 | 5 | 1A | LSU rRNA | U | 2074 | U | 2075 | A | 2077 | * | U | 2243 | U | 2244 | U | 2245 | G | 2246 | * | C | 2258 | G | 2259 | * | C | 2281 | G | 2282 | * | C | 2427 | A | 2432 | A | 2433 | A | 2434 | A | 2435 | cWW | cWH | cWW | ncsS | ntsS | cWH | cWW | cWW | cWW |
| 2 | J5_7A0S_007 | 7A0S | 0.0743 | 5 | X | LSU rRNA | U | 2057 | U | 2058 | A | 2060 | * | U | 2222 | U | 2223 | U | 2224 | G | 2225 | * | C | 2237 | G | 2238 | * | C | 2260 | G | 2261 | * | C | 2406 | A | 2411 | A | 2412 | A | 2413 | A | 2414 | cWW | cWH | cWW | cWH | cWW | cWW | cWW | ||
| 3 | J5_8B0X_009 | 8B0X | 0.0000 | 5 | a | LSU rRNA | U | 2078 | U | 2079 | A | 2081 | * | U | 2247 | U | 2248 | U | 2249 | G | 2250 | * | C | 2262 | U | 2263 | * | A | 2285 | G | 2286 | * | C | 2431 | A | 2436 | A | 2437 | A | 2438 | A | 2439 | cWW | cWH | cWW | ncsS | ntsS | cWH | cWW | cWW | cWW |
| 4 | J5_4WF9_007 | 4WF9 | 0.0629 | 5 | X | LSU rRNA | U | 2101 | U | 2102 | A | 2104 | * | U | 2270 | U | 2271 | U | 2272 | G | 2273 | * | C | 2285 | G | 2286 | * | C | 2308 | G | 2309 | * | C | 2454 | A | 2459 | A | 2460 | A | 2461 | A | 2462 | cWW | cWH | cWW | cWH | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUUA*UUUG*CG*CG*CGGAUAAAA | 3 |
| UUUA*UUUG*CU*AG*CGGAUAAAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UU*UU***GGAUAAA | 4 |
Release history
| Release | 4.0 | 4.1 | 4.2 | 4.3 | 4.4 | 4.5 | 4.6 | 4.7 | 4.8 | 4.9 | 4.10 | 4.11 | 4.12 | 4.13 | 4.14 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2025-08-13 | 2025-09-10 | 2025-10-08 | 2025-11-05 | 2025-12-03 | 2025-12-31 | 2026-01-28 | 2026-02-25 | 2026-03-25 | 2026-04-22 | 2026-05-20 | 2026-06-17 | 2026-07-15 | 2026-08-12 | 2026-09-09 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Heat map statistics
- Min 0.06 | Avg 0.07 | Max 0.11
Coloring options: