Motif J5_40847.1 Version J5_40847.1 of this group appears in releases 3.95 to 3.98
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | break | 11 | 12 | 13 | 14 | 15 | 16 | break | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 25 | break | 26 | 27 | 28 | 29 | 30 | 31 | 1-31 | 5-6 | 10-11 | 15-18 | 16-17 | 21-23 | 21-28 | 23-28 | 24-27 | 25-26 | |||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J5_8CRE_023 | 8CRE | 0.0000 | 6 | CM | SSU rRNA | A | 634 | C | 635 | C | 636 | U | 638 | G | 639 | * | U | 691 | U | 693 | C | 695 | U | 696 | U | 697 | * | G | 724 | A | 725 | C | 726 | U | 727 | U | 728 | U | 729 | * | A | 791 | U | 792 | A | 793 | G | 794 | A | 795 | A | 796 | A | 798 | G | 800 | A | 801 | * | U | 839 | A | 840 | U | 842 | G | 843 | A | 844 | U | 845 | cWW | cWW | ncWW | cWw | cWW | cSH | ntSs | tWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| ACCUUG*UUUCCUU*GACUUU*AUAGAAUAGGA*UAAUGAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CCUU*UUCCU*ACUU*UAGAAUAGG*AAUGA | 1 |
- Annotations
-
- (1)
- Basepair signature
- cWW-F-F-F-F-F-tWW-cWW-cWW-cWW-F-F-F-cSH-cWW-F-F-F-F-F-F-cWW-cWW
- Heat map statistics
- Min 0.00 | Avg 0.00 | Max 0.00
Coloring options: