Motif J5_43153.6 Version J5_43153.6 of this group appears in releases 4.0 to 4.6
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | break | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | break | 10 | 11 | break | 12 | 13 | 1-13 | 2-3 | 5-8 | 6-7 | 9-10 | 11-12 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J5_4WF9_003 | 4WF9 | 0.0000 | 2 | X | LSU rRNA | U | 576 | G | 578 | * | C | 603 | G | 604 | G | 606 | C | 607 | * | G | 620 | A | 621 | A | 622 | * | U | 1299 | G | 1300 | * | C | 2044 | A | 2045 | cWW | cWW | cWW | cWW | cWW | cWW |
| 2 | J5_8B0X_005 | 8B0X | 0.0655 | 2 | a | LSU rRNA | C | 531 | G | 533 | * | C | 562 | G | 563 | A | 565 | C | 566 | * | G | 579 | G | 580 | G | 581 | * | C | 1263 | A | 1264 | * | U | 2021 | G | 2022 | cWW | cWW | cWW | cWW | cWW | cWW |
| 3 | J5_7A0S_003 | 7A0S | 0.1051 | 2 | X | LSU rRNA | C | 541 | G | 543 | * | C | 569 | G | 570 | G | 572 | C | 573 | * | G | 586 | A | 587 | G | 588 | * | C | 1274 | A | 1275 | * | U | 2000 | G | 2001 | cWW | cWW | cWW | cWW | cWW | cWW |
| 4 | J5_9DFE_003 | 9DFE | 0.1146 | 2 | 1A | LSU rRNA | C | 531 | G | 533 | * | C | 560 | G | 561 | G | 563 | C | 564 | * | G | 577 | A | 578 | G | 579 | * | C | 1261 | A | 1262 | * | U | 2017 | G | 2018 | cWW | cWW | cWW | cWW | cWW | cWW |
| 5 | J5_4V9F_002 | 4V9F | 0.2493 | 2 | 0 | LSU rRNA | G | 537 | G | 539 | * | C | 617 | G | 618 | A | 620 | C | 621 | * | G | 634 | A | 635 | G | 636 | * | C | 1365 | C | 1366 | * | G | 2058 | U | 2059 | cWW | cWW | cWw | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAG*CGUGC*GAG*CA*UG | 2 |
| UAG*CGUGC*GAA*UG*CA | 1 |
| CAG*CGUAC*GGG*CA*UG | 1 |
| GCG*CGUAC*GAG*CC*GU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A*GUG*A** | 3 |
| A*GUA*G** | 1 |
| C*GUA*A** | 1 |
Release history
| Release | 4.0 | 4.1 | 4.2 | 4.3 | 4.4 | 4.5 | 4.6 |
|---|---|---|---|---|---|---|---|
| Date | 2025-08-13 | 2025-09-10 | 2025-10-08 | 2025-11-05 | 2025-12-03 | 2025-12-31 | 2026-01-28 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (5)
- Basepair signature
- cWW-cWW-cWW-F-cWW-cWW-cWW
- Heat map statistics
- Min 0.07 | Avg 0.13 | Max 0.27
Coloring options: