Motif J5_43592.1 Version J5_43592.1 of this group appears in releases 4.0 to 4.6
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 9 | break | 10 | 11 | 12 | 13 | break | 14 | 15 | break | 16 | 17 | 18 | 19 | 1-19 | 3-6 | 4-5 | 9-10 | 13-14 | 15-16 | |||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J5_4V9F_004 | 4V9F | 0.0000 | 1 | 0 | LSU rRNA | C | 658 | A | 659 | A | 660 | G | 661 | * | C | 685 | A | 686 | C | 687 | A | 688 | G | 689 | * | C | 696 | G | 697 | A | 698 | C | 699 | * | G | 727 | C | 728 | * | G | 743 | G | 744 | A | 746 | G | 747 | cWW | ntSs | cWW | cWW | cWW | cWW |
| 2 | J5_9E6Q_003 | 9E6Q | 0.1657 | 1 | 1 | LSU rRNA | C | 682 | G | 683 | A | 684 | G | 685 | * | C | 709 | G | 710 | U | 711 | A | 712 | G | 713 | * | C | 720 | G | 721 | A | 722 | C | 723 | * | G | 753 | G | 754 | * | C | 769 | G | 770 | A | 772 | G | 773 | cWW | ntSs | cWW | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAAG*CACAG*CGAC*GC*GGGAG | 1 |
| CGAG*CGUAG*CGAC*GG*CGUAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AA*ACA*GA**GGA | 1 |
| GA*GUA*GA**GUA | 1 |
Release history
| Release | 4.0 | 4.1 | 4.2 | 4.3 | 4.4 | 4.5 | 4.6 |
|---|---|---|---|---|---|---|---|
| Date | 2025-08-13 | 2025-09-10 | 2025-10-08 | 2025-11-05 | 2025-12-03 | 2025-12-31 | 2026-01-28 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-F-F-F-F-cWW-cWW-F-cWW-F-F-F-cWW-F
- Heat map statistics
- Min 0.17 | Avg 0.08 | Max 0.17
Coloring options: