Motif J5_47977.1 Version J5_47977.1 of this group appears in releases 3.91 to 3.97
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | break | 10 | 11 | 12 | 13 | break | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | break | 23 | 24 | 25 | 26 | 27 | 28 | 1-28 | 5-6 | 8-11 | 9-10 | 12-15 | 13-14 | 18-20 | 18-25 | 20-25 | 21-24 | 22-23 | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J5_8P9A_018 | 8P9A | 0.0000 | 7 | sR | SSU rRNA | A | 636 | C | 637 | U | 638 | U | 640 | G | 641 | * | U | 693 | U | 695 | C | 697 | U | 698 | * | A | 740 | C | 741 | U | 743 | U | 744 | * | A | 807 | U | 808 | A | 809 | G | 810 | A | 811 | A | 812 | A | 814 | G | 816 | A | 817 | * | U | 854 | A | 855 | U | 857 | G | 858 | A | 859 | U | 860 | cWW | cWW | ncBW | cWW | cWw | cWW | cSH | ntSs | tWW | ncWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| ACUUUG*UUUCCU*ACUUU*AUAGAAUAGGA*UAAUGAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUUU*UUCC*CUU*UAGAAUAGG*AAUGA | 1 |
Release history
| Release | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 | 3.96 | 3.97 |
|---|---|---|---|---|---|---|---|
| Date | 2024-12-04 | 2025-01-01 | 2025-01-29 | 2025-02-26 | 2025-03-26 | 2025-04-23 | 2025-05-21 |
| Status | New id, no parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (1)
- Basepair signature
- cWW-F-F-F-F-F-tWW-cWW-F-cWW-F-F-F-cWW-cSH-F-F-cWW-F-cWW-F
- Heat map statistics
- Min 0.00 | Avg 0.00 | Max 0.00
Coloring options: