#SLoop idPDBDisc#Non-coreChain(s)Standardized name for chain 1 2 3 4 5 6 7 8break 9 10 11 12 13 14 15 16break 17 18 19 20 21 22 23 24 25break 26 27 28 29 30 31break 32 33 34 351-355-136-227-127-208-99-1110-1312-2014-1915-1816-1719-2325-2630-3431-32
1 J5_4V9F_0074V9F0.000030 LSU rRNAC2098G2099A2100A2101G2102A2103C2104C2105*G2481G2482U2484A2485A2486C2487A2488G2489*C2533C2534U2535C2536G2537A2538U2539G2540U2541*G2618UR32619U2620PSU2621A2622G2623*C2641G2642G2643G2646cWWncWWtHHcWWntWScWWntSWtHHtHWncWWncWWcWWncSHcWWtHScWW
2 J5_5TBW_0055TBW0.153431 LSU rRNAA2399G2400A2401A2402G2403A2404C2405C2406*G2815G2816U2818A2819A2820C2821U2822G2823*C2867U2868U2869C2870G2871A2872U2873G2874U2875*G2952U2953U2954U2955A2956G2957*U2975A2976G2977U2980cWWncWWcWWntWScWWntSWntHHtHWcWWncSWcWWtHScWW

3D structures

Complete motif including flanking bases
SequenceCounts
CGAAGACC*GGAUAACAG*CCUCGAUGU*G(UR3)U(PSU)AG*CGGCUG1
AGAAGACC*GGAUAACUG*CUUCGAUGU*GUUUAG*UAGUUU1
Non-Watson-Crick part of the motif
SequenceCounts
GAAGAC*GAUAACA*CUCGAUG*(UR3)U(PSU)A*GGCU1
GAAGAC*GAUAACU*UUCGAUG*UUUA*AGUU1

Release history

Release3.23.33.43.53.63.73.83.93.103.113.123.133.143.153.163.173.183.193.203.213.223.233.243.253.263.273.283.293.303.313.323.333.343.353.363.373.383.393.403.413.423.433.443.453.463.473.483.493.503.513.523.533.543.553.563.573.583.593.603.613.623.633.643.653.663.673.683.693.703.713.723.733.743.753.763.773.783.793.803.813.823.833.843.853.863.873.883.893.90
Date2018-02-092018-03-082018-04-062018-05-042018-06-012018-06-292018-07-272018-08-242018-09-212018-10-192018-11-162018-12-142019-01-112019-02-082019-03-082019-04-052019-05-032019-05-312019-06-282019-07-262019-08-232019-09-192019-10-162019-11-132019-12-112020-01-082020-02-052020-03-042020-04-012020-04-292020-05-272020-06-242020-07-222020-08-192020-09-162020-10-142020-11-112020-12-092021-01-062021-02-032021-03-032021-03-312021-04-282021-05-262021-06-232021-07-212021-08-182021-09-152021-10-132021-11-102021-12-082022-01-052022-02-022022-03-022022-03-302022-04-272022-05-252022-06-222022-07-202022-08-172022-09-142022-10-122022-11-092022-12-072023-01-042023-02-012023-03-012023-03-292023-04-262023-05-242023-06-212023-07-192023-08-162023-09-132023-10-112023-11-082023-12-062024-01-032024-01-312024-02-282024-03-272024-04-242024-05-222024-06-192024-07-172024-08-142024-09-112024-10-092024-11-06
StatusNew id, no parentsExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (2)
  • Basepair signature
    cWW-F-tHS-F-F-F-cWW-F-F-cWW-F-cWW-F-F-tHH-cWW-F-tHW-F-F-F-F-F-cWW-F-F
    Heat map statistics
    Min 0.15 | Avg 0.08 | Max 0.15
    Help

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