Hairpin Loop Motif Atlas Release 3.88

#	Motif	Core Nts	Instances
1	HL_85603.2 View exemplar Basepair signature: cWW-F-F-F-F History status: Updated, 2 parents GNRA (278) GNRA related (3) GNRA variation (3)	6	284
2	HL_15422.1 View exemplar Basepair signature: cWW-tWH-F-F-F-F-F History status: New id, 2 parents T-loop with 2 stacked bulged bases (102) T-loop with 2 bulged bases not stacked (2)	9	104
3	HL_29960.2 View exemplar Basepair signature: cWW-tSW-F History status: Updated, 1 parent UNCG (46) UNCG variation (3)	5	49
4	HL_23932.1 View exemplar Basepair signature: cWW-tWH-F-F-F History status: New id, 1 parent T-loop with 2 stacked bulged bases (27) T-loop with 2 bulged bases not stacked (8) T-loop with 3 stacked bulged bases (3) T-loop with 1 bulged base (2)	7	40
5	HL_36427.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F History status: New id, 1 parent tRNA anticodon loop (33) Anticodon loop related (4)	9	37
6	HL_29031.1 View exemplar Basepair signature: cWW-F-F History status: New id, > 2 parents GNRA (22) GNRA variation (6) GNRA with GA tSW pair (4)	4	35
7	HL_33074.1 View exemplar Basepair signature: cWW-F History status: New id, > 2 parents U1 small nuclear ribonucleoprotein A binding hairpin (21) tRNA D-loop (1)	3	30
8	HL_11871.1 View exemplar Basepair signature: cWW-F History status: New id, > 2 parents Mini UNCG (29)	3	29
9	HL_12078.6 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Updated, 2 parents Pseudoknot geometry (28)	7	28
10	HL_58029.1 View exemplar Basepair signature: cWW-tSH-F-F History status: New id, 2 parents GNRA (24)	6	26
11	HL_22584.2 View exemplar Basepair signature: cWW-tSW-F History status: Updated, 2 parents Fab BL3-6 binding hairpin with tSW (18) Other HL (3)	5	25
12	HL_25462.4 View exemplar Basepair signature: cWW-cWS-F History status: Updated, 1 parent tRNA D-loop (23)	5	23
13	HL_46535.1 View exemplar Basepair signature: cWW-F History status: New id, > 2 parents Mini UNCG (17) Mini UNCG with extended bulge (3) Mini UNCG related (2)	3	22
14	HL_08002.11 View exemplar Basepair signature: cWW-tWH-F-F History status: Updated, 1 parent T-loop with unstacked turn (21)		21
15	HL_45820.1 View exemplar Basepair signature: cWW-tWH-F-F-F History status: New id, 2 parents T-loop with 2 stacked bulged bases (18) Other HL (1) T-loop with 2 bulged bases not stacked (1)	7	20
16	HL_76539.7 View exemplar Basepair signature: cWW-F History status: Updated, 2 parents GNRA variation (4) GNRA related (2)	3	19
17	HL_56241.3 View exemplar Basepair signature: cWW-F-F-F History status: Updated, 2 parents T-loop with 1 bulged base (2) Other HL (1) UNCG variation (1)	5	19
18	HL_00828.1 View exemplar Basepair signature: cWW-F-F-F-F History status: New id, > 2 parents Pseudoknot geometry (13) Ribsomal LSU H95 (6)	6	19
19	HL_28421.1 View exemplar Basepair signature: cWW-F History status: New id, > 2 parents	3	18
20	HL_84085.4 View exemplar Basepair signature: cWW-tSH-F-F-F-F History status: Updated, 1 parent GNRA wlth tandem sheared (12) GNRA with extra near cWW (3) GNRA related (1) GNRA wlth extra near cWW (1)	8	17
21	HL_70546.3 View exemplar Basepair signature: cWW-F History status: Updated, 1 parent	3	16
22	HL_96598.3 View exemplar Basepair signature: cWW History status: Updated, 2 parents Pseudoknot geometry (14) Externally structured (2)	2	16
23	HL_06192.4 View exemplar Basepair signature: cWW-tSH-F History status: Updated, 1 parent	5	15
24	HL_61911.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: New id, 2 parents GNRA related (5) T-loop related (2) GNRA with extra near cWW (1) tRNA anticodon loop (1)	8	15
25	HL_66853.4 View exemplar Basepair signature: cWW-F-F-F-cSH History status: Updated, 1 parent tRNA D-loop (4)		12
26	HL_42228.1 View exemplar Basepair signature: cWW-F History status: New id, 2 parents Pseudoknot geometry with 3' bulge (9) Pseudoknot geometry (1)	3	12
27	HL_73355.1 View exemplar Basepair signature: cWW-F-F-F-F History status: New id, 2 parents Purine riboswitch (7) Pseudoknot geometry (2)	6	12
28	HL_10397.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: New id, 2 parents GNRA with extra cWW (4) tRNA anticodon loop with synthetase (2) tRNA anticodon loop (1) T-loop (1) GNRA with extra cWH (1)	8	12
29	HL_23914.1 View exemplar Basepair signature: cWW-F-F-F History status: New id, > 2 parents UNCG (4)	5	12
30	HL_41152.1 View exemplar Basepair signature: cWW-F-F History status: New id, > 2 parents tRNA anticodon loop with synthetase (1) UNCG (1)	4	12
31	HL_58034.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: New id, 2 parents Pseudoknot with intercalation (9) Pseudoknot (2)	8	11
32	HL_78347.1 View exemplar Basepair signature: cWW-F-F-F-F History status: New id, > 2 parents	6	11
33	HL_52105.1 View exemplar Basepair signature: cWW-F History status: New id, 2 parents Mini UNCG (5)		11
34	HL_78499.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: New id, 2 parents GNRA variation (4) Anticodon loop related (2) tRNA anticodon loop (1)	7	11
35	HL_45598.1 View exemplar Basepair signature: cWW-F History status: New id, > 2 parents Mini UNCG (1)	3	11
36	HL_71554.2 View exemplar Basepair signature: cWW-cWW-F-F-F History status: Exact match T-loop related (5)	7	11
37	HL_66836.1 View exemplar Basepair signature: cWW-cWS-R History status: New id, 2 parents tRNA anticodon loop (6) Anticodon loop related (5)	8	11
38	HL_55359.1 View exemplar Basepair signature: cWW-F History status: New id, 2 parents Mini UNCG with extended bulge (1)	3	10
39	HL_12326.2 View exemplar Basepair signature: cWW-F-F-tSH-F-F History status: Exact match	10	10
40	HL_73266.6 View exemplar Basepair signature: cWW-F-F-cSW-cSH-F History status: Exact match	9	10
41	HL_38060.1 View exemplar Basepair signature: cWW-tWH-F-F-F History status: New id, 1 parent T-loop related (4)	7	10
42	HL_44926.1 View exemplar Basepair signature: cWW-F History status: New id, > 2 parents Mini UNCG (5) GNRA related (2)	3	10
43	HL_67216.8 View exemplar Basepair signature: cWW-tSH-F-F History status: Exact match	6	9
44	HL_00182.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: New id, 2 parents Pseudoknot geometry (2)	8	9
45	HL_47383.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: New id, 1 parent	7	9
46	HL_36684.2 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F History status: Updated, 2 parents	11	9
47	HL_23827.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F History status: New id, 2 parents	9	9
48	HL_07306.1 View exemplar Basepair signature: cWW-F History status: New id, 2 parents tRNA D-loop (5)	3	8
49	HL_32617.7 View exemplar Basepair signature: cWW-F-cSH History status: Updated, 1 parent tRNA D-loop (5) Other HL (3)		8
50	HL_26881.4 View exemplar Basepair signature: cWW-tWH-F-F History status: Updated, 1 parent GNRA-like with tWH (2) GNRA (1)	6	8
51	HL_83767.2 View exemplar Basepair signature: cWW-F-F History status: Updated, 1 parent	6	8
52	HL_04171.6 View exemplar Basepair signature: cWW-cWW-F-F-F-F-F-F History status: Updated, 1 parent	10	8
53	HL_51824.2 View exemplar Basepair signature: cWW-F-F-tSH-F-F History status: Exact match	8	8
54	HL_56677.8 View exemplar Basepair signature: cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW History status: Exact match		8
55	HL_34168.4 View exemplar Basepair signature: cWW-cWW-F History status: Updated, 1 parent UNCG variation (1)	5	8
56	HL_19870.8 View exemplar Basepair signature: cWW-tSH-tHH-tWW-F History status: Updated, 1 parent tRNA anticodon loop (1)	9	8
57	HL_64690.3 View exemplar Basepair signature: cWW-cSW-F-F-F-F History status: Updated, 1 parent	8	8
58	HL_74284.1 View exemplar Basepair signature: cWW-F-F History status: New id, > 2 parents T-loop related (1)	4	8
59	HL_20743.4 View exemplar Basepair signature: cWW-F-F-cSS-F History status: Exact match		7
60	HL_25222.1 View exemplar Basepair signature: cWW-cWW-F-F-F-F-F-F-F-F History status: New id, 1 parent		7
61	HL_81742.1 View exemplar Basepair signature: cWW-F-F History status: New id, > 2 parents T-loop related (3) tRNA D-loop (1)	4	7
62	HL_91058.2 View exemplar Basepair signature: cWW-F-F History status: Updated, 2 parents UNCG variation (2)	4	7
63	HL_39334.8 View exemplar Basepair signature: cWW-cWS-tSW-F-F History status: Updated, 1 parent	7	7
64	HL_64107.1 View exemplar Basepair signature: cWW-F History status: New id, 2 parents GNRA variation (3)	3	7
65	HL_34217.1 View exemplar Basepair signature: cWW-F-F History status: New id, 2 parents GNRA (4) UNCG variation (1)	4	7
66	HL_39947.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: New id, > 2 parents	7	7
67	HL_79462.1 View exemplar Basepair signature: cWW-F History status: New id, 1 parent Mini UNCG (5)	3	7
68	HL_14199.1 View exemplar Basepair signature: cWW-tSH-F History status: New id, 2 parents	5	7
69	HL_35086.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F History status: New id, 2 parents tRNA anticodon loop (3) Anticodon loop related (1)	9	7
70	HL_90617.5 View exemplar Basepair signature: cWW-tSH History status: Updated, 1 parent	4	6
71	HL_32095.1 View exemplar Basepair signature: cWW-F History status: New id, 2 parents tRNA D-loop (1)	3	6
72	HL_72777.1 View exemplar Basepair signature: cWW-F-cWH-F-F-F-F History status: New id, 1 parent	9	6
73	HL_50902.1 View exemplar Basepair signature: cWW-F-F History status: New id, 2 parents tRNA D-loop (6)	4	6
74	HL_85680.2 View exemplar Basepair signature: cWW-tSH-F History status: Updated, 1 parent		6
75	HL_90642.7 View exemplar Basepair signature: cWW-tWH-F-F-F History status: Exact match	7	6
76	HL_43613.6 View exemplar Basepair signature: cWW-tWH-tWH-F History status: Exact match	7	6
77	HL_21392.1 View exemplar Basepair signature: cWW-cWW-F-F History status: New id, 2 parents GNRA with extra cWW (1)	6	6
78	HL_56371.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: New id, 1 parent	7	6
79	HL_91680.1 View exemplar Basepair signature: cWW-F-F History status: New id, 2 parents UNCG (3)	4	6
80	HL_86769.3 View exemplar Basepair signature: cWW-F-cSS-cSH History status: Exact match	7	6
81	HL_40252.1 View exemplar Basepair signature: cWW-tSH-cWS-F History status: New id, 1 parent		6
82	HL_52553.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: New id, 1 parent	10	6
83	HL_30445.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: New id, 2 parents	10	6
84	HL_31196.1 View exemplar Basepair signature: cWW-cWW-F-F-F-F-F History status: New id, > 2 parents	9	6
85	HL_97756.1 View exemplar Basepair signature: cWW-cSH-cWS-tSW-cSW-cWW-F-F-F-F History status: New id, no parents	14	6
86	HL_16416.1 View exemplar Basepair signature: cWW-F-F-F History status: New id, 1 parent Pseudoknot geometry with 3' bulge (5)	5	5
87	HL_36514.1 View exemplar Basepair signature: cWW History status: New id, 1 parent Pseudoknot geometry (1)	2	5
88	HL_61849.1 View exemplar Basepair signature: cWW-F-F History status: Exact match	4	5
89	HL_04221.1 View exemplar Basepair signature: cWW-cWS-tSH-cWS-F History status: Exact match tRNA D-loop (5)		5
90	HL_04434.1 View exemplar Basepair signature: cWW-F-F History status: New id, 2 parents	4	5
91	HL_19368.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F History status: New id, 2 parents tRNA anticodon loop (2)	9	5
92	HL_57293.1 View exemplar Basepair signature: cWW-F History status: New id, 1 parent GNRA (3)	3	5
93	HL_50779.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F History status: New id, 1 parent	9	5
94	HL_60707.1 View exemplar Basepair signature: cWW-F History status: New id, > 2 parents	3	5
95	HL_89881.2 View exemplar Basepair signature: cWW-tHW-F-F-F-F-F-F History status: Exact match	10	5
96	HL_55195.1 View exemplar Basepair signature: cWW-F-F History status: Exact match	4	5
97	HL_74322.2 View exemplar Basepair signature: cWW-tSW-F History status: Exact match	5	4
98	HL_77232.3 View exemplar Basepair signature: cWW-F-F-F-F History status: Updated, 1 parent tRNA anticodon loop (4)	7	4
99	HL_16845.7 View exemplar Basepair signature: cWW-F-F-F History status: Exact match		4
100	HL_59342.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: New id, 1 parent		4
101	HL_07579.4 View exemplar Basepair signature: cWW-cWW-F-F History status: Updated, 1 parent	6	4
102	HL_78254.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: New id, 1 parent T-loop related (1) GNRA related (1)	7	4
103	HL_91503.5 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F History status: Exact match	9	4
104	HL_44439.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F History status: New id, > 2 parents tRNA anticodon loop (3) Anticodon loop related (1)	9	4
105	HL_83808.1 View exemplar Basepair signature: cWW-tWW-F-F-F History status: Exact match Pseudoknot (4)		4
106	HL_50142.2 View exemplar Basepair signature: cWW-F-F-F History status: Exact match GNRA variation (2)		4
107	HL_52085.1 View exemplar Basepair signature: cWW-F-F-F History status: New id, 1 parent	5	4
108	HL_63154.1 View exemplar Basepair signature: cWW-tSW History status: Exact match	4	4
109	HL_73268.1 View exemplar Basepair signature: cWW-F-F-cSS-cSS-F History status: New id, 2 parents	9	4
110	HL_45036.1 View exemplar Basepair signature: cWW-F History status: New id, > 2 parents UNCG variation (1) GNRA variation (1)	3	4
111	HL_86877.1 View exemplar Basepair signature: cWW-cSH-F-F-F-F-F-F History status: Exact match	9	4
112	HL_01927.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: New id, 2 parents	7	4
113	HL_60563.1 View exemplar Basepair signature: cWW-F History status: New id, 2 parents Mini UNCG (1) T-loop related (1)	3	4
114	HL_84632.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: New id, 1 parent	8	4
115	HL_19988.1 View exemplar Basepair signature: F-F-F-F-F-F-F-F History status: New id, 2 parents	8	4
116	HL_84702.1 View exemplar Basepair signature: cWW-F-F-tHW-F-F-F-F History status: New id, 1 parent	10	4
117	HL_36032.1 View exemplar Basepair signature: cWW-cWW History status: New id, 1 parent	4	3
118	HL_20751.2 View exemplar Basepair signature: cWW-tHW-F-F-F-F-F-F-F-F-F History status: Updated, 1 parent	13	3
119	HL_46766.2 View exemplar Basepair signature: cWW-tWH-F-F-F-F History status: Exact match		3
120	HL_76846.1 View exemplar Basepair signature: cWW-F-F-F-F History status: New id, 2 parents GNRA (1)	6	3
121	HL_67667.2 View exemplar Basepair signature: cWW-F-F History status: Updated, 1 parent	4	3
122	HL_73247.1 View exemplar Basepair signature: cWW-F-tWH-F-F-F-F-F-F-F-F-F-F History status: Exact match Pseudoknot geometry (3)	15	3
123	HL_51713.1 View exemplar Basepair signature: cWW-F-F-F History status: New id, 1 parent GNRA (1)	5	3
124	HL_67835.1 View exemplar Basepair signature: cWW-F-F History status: New id, 2 parents tRNA D-loop (3)	4	3
125	HL_48076.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F History status: New id, 1 parent tRNA anticodon loop (2) Anticodon loop related (1)	9	3
126	HL_86109.1 View exemplar Basepair signature: cWW-F-tWH-F-F-F-F-F-F-F History status: Exact match	12	3
127	HL_12758.2 View exemplar Basepair signature: cWW-tSH-F-cHW-cWH-F-F-tSH-cWH-cHW-cWH-cHW-cWH-cWH-cHW-tSH-cHW-cWH-F-cWH History status: Exact match G-quadruplex (3)	22	3
128	HL_69465.1 View exemplar Basepair signature: cWW History status: New id, 1 parent	2	3
129	HL_59735.2 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Updated, 1 parent	7	3
130	HL_04531.1 View exemplar Basepair signature: cWW-cWS-F History status: New id, no parents tRNA D-loop (2)		3
131	HL_52319.1 View exemplar Basepair signature: cWW-tSH-F-F-F-F-F-F History status: New id, 1 parent	10	3
132	HL_45177.1 View exemplar Basepair signature: cWW-F-F-F History status: New id, 1 parent		3
133	HL_50537.5 View exemplar Basepair signature: cWW-cWW-F-F History status: Updated, 1 parent tRNA anticodon loop with synthetase (3)	6	3
134	HL_02373.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F-F-F-F-F History status: New id, 1 parent		3
135	HL_88953.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: New id, 2 parents	7	3
136	HL_09829.2 View exemplar Basepair signature: cWW-F History status: Updated, 1 parent	3	3
137	HL_53504.1 View exemplar Basepair signature: cWW-tSH-F-F-F-F-F-F History status: New id, 2 parents		3
138	HL_80621.1 View exemplar Basepair signature: cWW-cWS-F History status: New id, 2 parents UNCG related (2)	5	3
139	HL_20146.2 View exemplar Basepair signature: cWW-tSH-F-F History status: Updated, 1 parent		3
140	HL_81205.2 View exemplar Basepair signature: cWW-cWW-tWH-F-tWH-F-F-F-F-F History status: Exact match	14	3
141	HL_15708.4 View exemplar Basepair signature: cWW-F-F History status: Updated, 1 parent GNRA variation (1)	5	3
142	HL_31581.5 View exemplar Basepair signature: cWW-F-F-F-cSH-F-F-F-F History status: Exact match U1 small nuclear ribonucleoprotein A binding hairpin (1)	11	3
143	HL_10456.1 View exemplar Basepair signature: cWW-F-cWW-tWW-F-tHW-F-F-F-F-F-F-F History status: New id, no parents	17	2
144	HL_41181.1 View exemplar Basepair signature: cWW-F-F-F History status: New id, 2 parents	5	2
145	HL_55305.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	7	2
146	HL_81622.1 View exemplar Basepair signature: cWW-cWS-F-tSW-F-tSH-tSH-cWW-F-F History status: New id, no parents	14	2
147	HL_61388.1 View exemplar Basepair signature: cWW-F History status: New id, 2 parents	3	2
148	HL_90620.1 View exemplar Basepair signature: cWW-F-F-F-F-cSW-cSH-F History status: Exact match	11	2
149	HL_98870.1 View exemplar Basepair signature: cWW-tSH-tWW-F-F-F-F-F History status: Exact match	11	2
150	HL_03333.1 View exemplar Basepair signature: cWW-F-F-F-cSH-F History status: Exact match	8	2
151	HL_73183.1 View exemplar Basepair signature: cWW-tSH-tHW-F-F-F-F-F-F-F-F-F History status: Exact match Pseudoknot geometry with G-bulge (2)	15	2
152	HL_21372.1 View exemplar Basepair signature: cWW-F-cSH-F-F History status: New id, 1 parent	7	2
153	HL_51266.1 View exemplar Basepair signature: cWW-F-F-F-F History status: New id, 1 parent	6	2
154	HL_81948.1 View exemplar Basepair signature: cWW-F-F-F-F History status: New id, 1 parent	6	2
155	HL_03862.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: New id, 1 parent	8	2
156	HL_07518.1 View exemplar Basepair signature: cWW-tSH-F History status: Exact match UNCG variation (1)		2
157	HL_73255.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Exact match	8	2
158	HL_62912.1 View exemplar Basepair signature: cWW-cWW-F-F History status: New id, 1 parent	6	2
159	HL_33817.1 View exemplar Basepair signature: cWW-cWW-tSW-F-F History status: Exact match	7	2
160	HL_86546.1 View exemplar Basepair signature: cWW-F-F History status: New id, 2 parents	4	2
161	HL_01226.2 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Updated, 1 parent	7	2
162	HL_18747.1 View exemplar Basepair signature: cWW-F-F History status: Exact match		2
163	HL_08510.1 View exemplar Basepair signature: cWW-F-F-cSH-F-F History status: Exact match	8	2
164	HL_01876.1 View exemplar Basepair signature: cWW-F-F History status: New id, 2 parents	4	2
165	HL_84221.1 View exemplar Basepair signature: cWW-F-F History status: New id, 2 parents	4	2
166	HL_60293.1 View exemplar Basepair signature: cWW-cWH-F-cWH-cHW-cHW-cWH-cHW-cWH-F-cWH-cWH-cWH-F History status: Exact match G-quadruplex (2)	18	2
167	HL_08513.1 View exemplar Basepair signature: cWW-tSH-tSS-tHS-F-F-F-F-F-F-F-F-F-F-F History status: New id, no parents	18	2
168	HL_64163.1 View exemplar Basepair signature: cWW-cWW-F-F-F-F-F-F-F-F History status: Exact match		2
169	HL_30239.1 View exemplar Basepair signature: cWW-F-F History status: Exact match	4	2
170	HL_84288.1 View exemplar Basepair signature: cWW-tWH-tWH-F-F-F-F History status: Exact match	10	2
171	HL_73778.1 View exemplar Basepair signature: cWW-F History status: Exact match	3	2
172	HL_87834.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: New id, 2 parents GNRA (1)	7	2
173	HL_23569.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: New id, 1 parent	8	2
174	HL_79531.1 View exemplar Basepair signature: cWW-F-F History status: Exact match	4	2
175	HL_04725.1 View exemplar Basepair signature: cWW-cWS-cWW-cWW-cWS History status: New id, no parents	8	2
176	HL_50588.1 View exemplar Basepair signature: cWW-cWW-F-F-F-F-F-F-F-F-F-F-F-F-F History status: New id, 1 parent		2
177	HL_73788.1 View exemplar Basepair signature: cWW-F-F-F History status: New id, 1 parent	5	2
178	HL_40310.1 View exemplar Basepair signature: cWW-tSH-F-F-F History status: Exact match	7	2
179	HL_45785.1 View exemplar Basepair signature: cWW-F-F-F-F-cSH-F-F History status: Exact match	11	2
180	HL_57863.1 View exemplar Basepair signature: cWW-F-F-cWH-cWH-F History status: New id, 1 parent G-quadruplex fragment (2)	9	2
181	HL_05727.1 View exemplar Basepair signature: cWW-F-F-F History status: Exact match	5	2
182	HL_72714.3 View exemplar Basepair signature: cWW-cWW-cWH-F-F-F-F-F History status: Exact match	11	2
183	HL_50851.1 View exemplar Basepair signature: cWW-cWH-cWH-cWH-cWH-F History status: Exact match G-quadruplex fragment (1)	9	1
184	HL_60914.1 View exemplar Basepair signature: cWW-F History status: Exact match	3	1
185	HL_98252.1 View exemplar Basepair signature: cWW-tWW-F-F-F-F History status: Exact match	8	1
186	HL_02966.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F History status: New id, no parents	37	1
187	HL_16395.1 View exemplar Basepair signature: cWW-F-F-F-F History status: Exact match		1
188	HL_06766.1 View exemplar Basepair signature: cWW-F-F-F History status: New id, 1 parent	5	1
189	HL_32255.1 View exemplar Basepair signature: cWW-tWW-F-F-cWW-F-F History status: Exact match		1
190	HL_58224.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: New id, 1 parent	7	1
191	HL_16843.1 View exemplar Basepair signature: cWW-F-cWH History status: Exact match	6	1
192	HL_58539.1 View exemplar Basepair signature: cWW-tWS-F-tHW-F-F-F-F-F-F-F-F History status: Exact match	13	1
193	HL_85993.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: New id, 1 parent	7	1
194	HL_00317.1 View exemplar Basepair signature: cWW-F-cSS-F-F-F-F-F-F-F-F-F-F-F-F-F-F History status: Exact match	19	1
195	HL_44294.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	7	1
196	HL_21400.1 View exemplar Basepair signature: cWW-tWH-tSW-cWW-cWH-cHW-cWH-cWH-cHW-cWH-cHW-cWH-cWH-cWH-cWH-cWH History status: New id, no parents G-quadruplex (1)	18	1
197	HL_36790.1 View exemplar Basepair signature: F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F History status: New id, 1 parent	18	1
198	HL_56500.1 View exemplar Basepair signature: cWW-cWW-F-cSH-F-F History status: Exact match	9	1
199	HL_68185.1 View exemplar Basepair signature: cWW-F-F-F-F History status: New id, no parents GNRA variation (1)	6	1
200	HL_16991.1 View exemplar Basepair signature: cWW-cWH-cWH-F-cWH-F History status: Exact match G-quadruplex fragment (1)	8	1
201	HL_59564.1 View exemplar Basepair signature: cWW-F-cSS-F-cSS-F-F-F-F-F-F-F-F-F-F-F-F History status: Exact match	20	1
202	HL_21612.1 View exemplar Basepair signature: F-F-F-F-F-F-F History status: New id, no parents	7	1
203	HL_12870.1 View exemplar Basepair signature: cWW-tHW-F-F-F-F-F-F-F-F-F History status: Exact match	12	1
204	HL_50259.1 View exemplar Basepair signature: cWW-cWS-F-F History status: New id, no parents tRNA D-loop (1)	6	1
205	HL_92488.1 View exemplar Basepair signature: cWW-cWW-F-cSS-F-F-F-F-F-F History status: Exact match	13	1
206	HL_13160.1 View exemplar Basepair signature: cWW-cWS-F-F-F-F History status: Exact match tRNA D-loop (1)	8	1
207	HL_56845.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F History status: Exact match	14	1
208	HL_70228.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	5	1
209	HL_50318.1 View exemplar Basepair signature: cWW-cSH-F-F History status: Exact match	6	1
210	HL_23331.1 View exemplar Basepair signature: cWW-cWW-F-F-F-F History status: New id, 1 parent		1
211	HL_94032.1 View exemplar Basepair signature: cWW-cSH-F-F-F-F-F-F History status: Exact match		1
212	HL_13939.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-cSH History status: New id, 1 parent	11	1
213	HL_57204.1 View exemplar Basepair signature: cWW-F-F-F History status: Exact match Mini UNCG related (1)	3	1
214	HL_04641.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	7	1
215	HL_34921.1 View exemplar Basepair signature: F-F-F-F-F-F-F-F-F-F History status: New id, no parents	10	1
216	HL_08602.1 View exemplar Basepair signature: cWW-cSS-F-cSS-F-F-F-F-F History status: Exact match	11	1
217	HL_70682.1 View exemplar Basepair signature: cWW-tWH-F-F-F-F History status: Exact match	8	1
218	HL_60592.1 View exemplar Basepair signature: cWW-F-F-F History status: Exact match	5	1
219	HL_66482.1 View exemplar Basepair signature: cWW-cWW-tWW-F-F-tWH-F-F-F-F-F-F-F-F History status: New id, no parents	18	1
220	HL_97733.1 View exemplar Basepair signature: cWW-F-F-F-cSH-F History status: Exact match	8	1
221	HL_02483.1 View exemplar Basepair signature: cWW-tWH-F-cSH-F-F-F History status: Exact match	10	1
222	HL_35354.1 View exemplar Basepair signature: cWW-cWH-cHW-F-cWH-cHW-F-F-tHH-cWH-tWW-cWH-F-tWW-cWH-F-cWH History status: Exact match	21	1
223	HL_02811.1 View exemplar Basepair signature: cWW-F-F History status: Exact match	4	1
224	HL_84847.1 View exemplar Basepair signature: cWW-F-F-F-F-tWW-F-F-F-F-F-F History status: Exact match	14	1

Coloring options:
Nucleotide numbers

New id, 2 parents 41; Exact match 76; New id, > 2 parents 18; Updated, 1 parent 27; New id, 1 parent 41; New id, no parents 13; Updated, 2 parents 8;

Hairpin Loop Motif Atlas Release 3.88 Download CSV JSON annotations

Hairpin Loop Motif Atlas Release 3.88

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