Hairpin Loop Motif Atlas Release 3.95

#	Motif	Num Nts	Instances
1	HL_37824.6 View exemplar Basepair signature: cWW-F-F-F-F History status: Updated, 1 parent GNRA (311) GNRA variation (11) GNRA with GA tSW pair (4) GNRA related (1)	6	360
2	HL_28252.5 View exemplar Basepair signature: cWW-tWH-F-F-F-F-F History status: Updated, 2 parents T-loop with 2 stacked bulged bases (139) T-loop related (3) T-loop with 2 bulged bases not stacked (2)	9	149
3	HL_34617.4 View exemplar Basepair signature: cWW-tSW-F History status: Updated, 1 parent UNCG (52) UNCG variation (2)	5	58
4	HL_06059.4 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F History status: Updated, 1 parent tRNA anticodon loop (38) Anticodon loop related (5)	9	54
5	HL_48778.1 View exemplar Basepair signature: cWW-F History status: New id, 2 parents Mini UNCG (40) Mini UNCG with extended bulge (2)	3	51
6	HL_48417.4 View exemplar Basepair signature: cWW-F-F History status: Updated, 2 parents tRNA D-loop (1)	4	28
7	HL_93324.3 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Updated, 1 parent Pseudoknot geometry (23)	8	26
8	HL_77436.4 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Updated, 1 parent T-loop related (12) tRNA anticodon loop (4) Other HL (2) T-loop (1) T-loop with 1 bulged base (1)	7	24
9	HL_33074.4 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: Updated, 1 parent U1 small nuclear ribonucleoprotein A binding hairpin (21)	10	22
10	HL_22584.5 View exemplar Basepair signature: cWW-tSW-F History status: Updated, 1 parent Fab BL3-6 binding hairpin with tSW (18) Other HL (3)	5	22
11	HL_31585.3 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Updated, 1 parent	7	19
12	HL_01609.3 View exemplar Basepair signature: cWW-tWH-F-F-F History status: Updated, 1 parent T-loop with 2 bulged bases not stacked (7) T-loop with 2 stacked bulged bases (5) T-loop with 1 bulged base (1)	7	18
13	HL_75660.4 View exemplar Basepair signature: cWW-F History status: Updated, 1 parent	3	18
14	HL_56334.1 View exemplar Basepair signature: cWW-F History status: Exact match Mini UNCG (14) Mini UNCG related (2)	3	16
15	HL_81538.2 View exemplar Basepair signature: cWW-tSH-F-F-F-F History status: Updated, 1 parent GNRA wlth tandem sheared (10) GNRA related (1)	8	16
16	HL_20811.3 View exemplar Basepair signature: cWW-cWS-F History status: Updated, 1 parent tRNA D-loop (15) Other HL (1)	5	16
17	HL_30680.3 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Updated, 1 parent Pseudoknot geometry (14)	7	15
18	HL_53890.2 View exemplar Basepair signature: cWW-F-F-F History status: Updated, 1 parent UNCG variation (1) GNRA related (1)	5	15
19	HL_30068.2 View exemplar Basepair signature: cWW-F-F-F-F History status: Updated, 1 parent GNRA (1)	6	15
20	HL_65794.5 View exemplar Basepair signature: cWW-F-F-F-F History status: Updated, 1 parent Pseudoknot geometry (6) Ribsomal LSU H95 (4)	6	14
21	HL_57176.2 View exemplar Basepair signature: cWW-F-F-F History status: Updated, 1 parent Pseudoknot geometry with 3' bulge (8)	5	14
22	HL_27670.2 View exemplar Basepair signature: cWW-tWH-F-F History status: Updated, 1 parent T-loop with unstacked turn (10)	6	13
23	HL_75293.4 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: Updated, 1 parent	10	13
24	HL_80709.2 View exemplar Basepair signature: cWW-F-F-F History status: Updated, 1 parent	5	13
25	HL_73266.8 View exemplar Basepair signature: cWW-F-F-cSW-cSH-F History status: Exact match	9	12
26	HL_85367.2 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Updated, 1 parent	8	11
27	HL_49922.3 View exemplar Basepair signature: cWW-F-F-F History status: Updated, 1 parent	5	11
28	HL_66853.7 View exemplar Basepair signature: cWW-cWS-F-cSH History status: Updated, 1 parent	7	11
29	HL_47787.2 View exemplar Basepair signature: cWW-F-F-F-F History status: Updated, 1 parent	6	10
30	HL_77600.2 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Updated, 1 parent Pseudoknot geometry (4)	7	10
31	HL_67407.3 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: Updated, 1 parent	10	10
32	HL_20167.2 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Updated, 1 parent T-loop related (1) GNRA with extra cWW (1)	8	10
33	HL_10453.2 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Updated, 1 parent tRNA anticodon loop (4) GNRA related (1)	7	9
34	HL_64690.6 View exemplar Basepair signature: cWW-cSW-F-F-F-F History status: Updated, 1 parent	8	9
35	HL_04171.7 View exemplar Basepair signature: cWW-cWW-F-F-F-F-F-F History status: Exact match	10	9
36	HL_37369.2 View exemplar Basepair signature: cWW-tSH-F-F-F History status: Updated, 1 parent	7	9
37	HL_78347.4 View exemplar Basepair signature: cWW-F-F-F-F History status: Updated, 1 parent	6	9
38	HL_04783.2 View exemplar Basepair signature: cWW-F-F-F History status: Exact match GNRA related (3)	5	9
39	HL_84299.3 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Updated, 1 parent GNRA related (3)	8	9
40	HL_02837.2 View exemplar Basepair signature: cWW-F-F-F-F History status: Updated, 1 parent GNRA variation (4)	6	9
41	HL_77082.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: New id, 2 parents tRNA anticodon loop (2) Anticodon loop related (2) Pseudoknot geometry (1)	8	8
42	HL_36684.3 View exemplar Basepair signature: cWW-F-F-F-F-cWW-F-F-F History status: Exact match	11	8
43	HL_91939.2 View exemplar Basepair signature: cWW-tSH-tHH-tWW-F-F-F History status: Updated, 1 parent	11	8
44	HL_69752.1 View exemplar Basepair signature: cWW-F History status: New id, 2 parents	3	8
45	HL_32346.3 View exemplar Basepair signature: cWW-F History status: Updated, 1 parent	3	8
46	HL_04259.2 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Updated, 1 parent GNRA with extra cWW (3) GNRA related (1) tRNA anticodon loop (1) GNRA with near cWW (1) GNRA with extra tWH (1)	8	8
47	HL_52953.2 View exemplar Basepair signature: cWW-F-F-F-F History status: Exact match	6	8
48	HL_61996.2 View exemplar Basepair signature: cWW-tWH-F-F-F History status: Updated, 1 parent	7	8
49	HL_93616.2 View exemplar Basepair signature: cWW-cWS-F-F-F-F History status: Exact match tRNA D-loop (7)	8	8
50	HL_89567.2 View exemplar Basepair signature: cWW-F-F-F History status: Updated, 1 parent	5	8
51	HL_40252.2 View exemplar Basepair signature: cWW-cWS-tHS-F History status: Exact match	7	7
52	HL_87553.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: New id, 2 parents	7	7
53	HL_87954.2 View exemplar Basepair signature: cWW-tSW-F History status: Exact match	5	7
54	HL_20743.5 View exemplar Basepair signature: cWW-cWW-F-F-F-F History status: Exact match	8	7
55	HL_88205.2 View exemplar Basepair signature: cWW-cWS-tSW-F-F History status: Updated, 1 parent	7	7
56	HL_07886.2 View exemplar Basepair signature: cWW-F-F-F History status: Updated, 1 parent	5	7
57	HL_32735.2 View exemplar Basepair signature: cWW-tSH-F-F-F-F-F History status: Updated, 1 parent	9	7
58	HL_81545.2 View exemplar Basepair signature: cWW-tWH-F-F-F-F History status: Updated, 1 parent	8	7
59	HL_74055.2 View exemplar Basepair signature: cWW-tWH-cWH-tSH-tHW-tHW-tSW History status: Updated, 1 parent	13	7
60	HL_42998.2 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Updated, 1 parent	8	7
61	HL_38901.2 View exemplar Basepair signature: cWW-F-cSH History status: Updated, 1 parent tRNA D-loop (4) D-loop related (1)	5	7
62	HL_19210.3 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: Updated, 1 parent	10	7
63	HL_35677.3 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F History status: Updated, 1 parent Pseudoknot with intercalation (3)	9	7
64	HL_97756.2 View exemplar Basepair signature: cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F History status: Exact match	14	6
65	HL_56131.2 View exemplar Basepair signature: cWW-F-F History status: Updated, 1 parent	4	6
66	HL_50860.2 View exemplar Basepair signature: cWW-F-cWH-F-F-F-F History status: Updated, 1 parent	9	6
67	HL_01962.2 View exemplar Basepair signature: cWW-tWH-tWH-F History status: Updated, 1 parent	7	6
68	HL_93438.2 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: Updated, 1 parent Pseudoknot with intercalation (3)	10	6
69	HL_50006.1 View exemplar Basepair signature: cWW-F-F History status: New id, 2 parents	4	6
70	HL_53454.2 View exemplar Basepair signature: cWW-tSH-F-F-F-F-F History status: Updated, 1 parent	9	6
71	HL_83632.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Exact match tRNA anticodon loop (4)	8	6
72	HL_99769.3 View exemplar Basepair signature: cWW-cWW-F-F-F-F History status: Updated, 2 parents	8	6
73	HL_55195.3 View exemplar Basepair signature: cWW-F History status: Exact match	3	6
74	HL_99867.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: New id, 1 parent	10	5
75	HL_50779.3 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F History status: Updated, 1 parent	9	5
76	HL_06226.3 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: Updated, 1 parent	10	5
77	HL_20554.2 View exemplar Basepair signature: cWW-tWH-F-F-F History status: Exact match	7	5
78	HL_78197.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: New id, 2 parents Pseudoknot (2)	8	5
79	HL_42046.2 View exemplar Basepair signature: cWW-tSS-F-F-F History status: Exact match	7	5
80	HL_89199.2 View exemplar Basepair signature: cWW-F-F-F History status: Exact match Mini UNCG (4)	5	5
81	HL_86769.4 View exemplar Basepair signature: cWW-cWW-cSH-F History status: Exact match	7	5
82	HL_38649.1 View exemplar Basepair signature: cWW-tSH-F-F-F-F-F-F History status: Exact match	10	5
83	HL_45175.1 View exemplar Basepair signature: cWW-cWS-F-F History status: Exact match tRNA D-loop (4)	6	5
84	HL_57875.1 View exemplar Basepair signature: cWW-F-F History status: New id, 2 parents	4	5
85	HL_89881.4 View exemplar Basepair signature: cWW-tHW-F-F-F-F-F-F History status: Updated, 1 parent	10	5
86	HL_05304.3 View exemplar Basepair signature: cWW-cWW-F-F-tSH-F-F-F-F-F History status: Updated, 1 parent	13	5
87	HL_41464.2 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Updated, 1 parent	7	4
88	HL_55436.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: Exact match Pseudoknot geometry (1)	10	4
89	HL_28075.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: New id, 2 parents	7	4
90	HL_23827.4 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: Updated, 1 parent	10	4
91	HL_98864.1 View exemplar Basepair signature: cWW-tWH-F-F-F-F-F-F History status: Exact match T-loop with unstacked turn (4)	10	4
92	HL_49941.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match tRNA D-loop (1)	7	4
93	HL_70782.2 View exemplar Basepair signature: cWW-F History status: Updated, 1 parent	3	4
94	HL_82710.2 View exemplar Basepair signature: cWW-F-F-F History status: Exact match	5	4
95	HL_08100.1 View exemplar Basepair signature: cWW-F-F-F History status: New id, 1 parent Other HL (1)	5	4
96	HL_38808.1 View exemplar Basepair signature: cWW-cWW History status: Exact match	4	4
97	HL_86877.1 View exemplar Basepair signature: cWW-cSH-F-F-F-F-F-F History status: Exact match	9	4
98	HL_02817.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: New id, 1 parent	7	4
99	HL_09260.1 View exemplar Basepair signature: cWW-F-F-F-F History status: Exact match tRNA D-loop (2)	6	4
100	HL_50537.6 View exemplar Basepair signature: cWW-F-F-F History status: Exact match D-loop related (1)	5	4
101	HL_13963.3 View exemplar Basepair signature: cWW-F-F History status: Updated, 1 parent	4	4
102	HL_09452.1 View exemplar Basepair signature: cWW-F-F-F History status: Exact match	5	3
103	HL_02887.2 View exemplar Basepair signature: cWW-tWH-F-F-F-F-F-F History status: Exact match T-loop with 3 stacked bulged bases (3)	10	3
104	HL_68572.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F History status: Exact match	9	3
105	HL_80922.2 View exemplar Basepair signature: cWW-tSH-F History status: Exact match	5	3
106	HL_91503.7 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F History status: Exact match	9	3
107	HL_03273.3 View exemplar Basepair signature: cWW-F-F-tWH-F-F-F History status: Updated, 1 parent	9	3
108	HL_68767.1 View exemplar Basepair signature: cWW-cWS-tSH-cWS-F History status: Exact match tRNA D-loop (3)	8	3
109	HL_81100.2 View exemplar Basepair signature: cWW History status: Exact match	2	3
110	HL_31581.6 View exemplar Basepair signature: cWW-cHS-F-F-F-cWW-F-F-F History status: Exact match	11	3
111	HL_73247.1 View exemplar Basepair signature: cWW-F-tWH-F-F-F-F-F-F-F-F-F-F History status: Exact match Pseudoknot geometry (3)	15	3
112	HL_97917.2 View exemplar Basepair signature: cWW-F-F-F-F History status: Exact match	6	3
113	HL_81205.2 View exemplar Basepair signature: cWW-cWW-tWH-F-tWH-F-F-F-F-F History status: Exact match	14	3
114	HL_07480.1 View exemplar Basepair signature: cWW-tSH-F-F-F History status: Exact match	7	3
115	HL_59735.4 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Updated, 1 parent	7	3
116	HL_20751.2 View exemplar Basepair signature: cWW-tHW-F-F-F-F-F-F-F-F-F History status: Exact match	13	3
117	HL_88364.2 View exemplar Basepair signature: cWW-cWW-F-F-F-F-F-F-F-F-F-F-F History status: Exact match	15	3
118	HL_16398.2 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Exact match	8	3
119	HL_29129.3 View exemplar Basepair signature: cWW-tWH-F-F-F-F History status: Updated, 1 parent	8	3
120	HL_07951.2 View exemplar Basepair signature: cWW-F-F History status: Exact match tRNA D-loop (1)	4	3
121	HL_86109.1 View exemplar Basepair signature: cWW-F-tWH-F-F-F-F-F-F-F History status: Exact match	12	3
122	HL_04642.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match tRNA D-loop (1)	7	3
123	HL_25847.2 View exemplar Basepair signature: cWW-F-cSH-tHW-F-F-F History status: Updated, 1 parent	10	3
124	HL_74379.2 View exemplar Basepair signature: cWW-F-F-cSS-cSS-F History status: Exact match	9	3
125	HL_86870.1 View exemplar Basepair signature: cWW-cWW-F History status: New id, 1 parent	5	3
126	HL_25967.2 View exemplar Basepair signature: cWW-cWW-F-F-F History status: Updated, 1 parent	7	3
127	HL_83808.4 View exemplar Basepair signature: cWW-tWW-F-F-F History status: Updated, 1 parent Pseudoknot (3)	7	3
128	HL_94376.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F History status: Exact match Pseudoknot geometry (2)	11	3
129	HL_50418.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F History status: New id, 1 parent	11	3
130	HL_67667.2 View exemplar Basepair signature: cWW-F-F History status: Exact match	4	3
131	HL_80599.2 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F History status: Updated, 1 parent	9	3
132	HL_22622.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match Mini UNCG with extended bulge (1)	7	2
133	HL_50621.1 View exemplar Basepair signature: cWW-F History status: New id, 1 parent	3	2
134	HL_13971.1 View exemplar Basepair signature: cWW-cWS-F-tSW-F-tSH-tSH-cWW-F-F History status: New id, 1 parent	14	2
135	HL_27483.1 View exemplar Basepair signature: cWW-F History status: New id, 1 parent	3	2
136	HL_55305.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	7	2
137	HL_20535.1 View exemplar Basepair signature: cWW-F-F-F-F History status: Exact match	6	2
138	HL_73183.1 View exemplar Basepair signature: cWW-tSH-tHW-F-F-F-F-F-F-F-F-F History status: Exact match Pseudoknot geometry with G-bulge (2)	14	2
139	HL_36335.1 View exemplar Basepair signature: cWW-F-F-cSS-cSS-F History status: Exact match	9	2
140	HL_10456.1 View exemplar Basepair signature: cWW-F-cWW-tWW-F-tHW-F-F-F-F-F-F-F History status: Exact match	17	2
141	HL_23115.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: New id, no parents tRNA D-loop (1)	7	2
142	HL_64292.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: Exact match	14	2
143	HL_03333.1 View exemplar Basepair signature: cWW-F-F-F-cSH-F History status: Exact match	8	2
144	HL_41543.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: New id, 1 parent	10	2
145	HL_69139.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: New id, 1 parent	10	2
146	HL_73255.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Exact match	6	2
147	HL_10540.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	7	2
148	HL_37344.1 View exemplar Basepair signature: cWW-F-F History status: Exact match	4	2
149	HL_15574.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	7	2
150	HL_41902.1 View exemplar Basepair signature: cWW-cWW-cWH-F-F-F-F-F History status: New id, no parents	11	2
151	HL_81312.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F History status: New id, 1 parent	11	2
152	HL_60293.1 View exemplar Basepair signature: cWW-cWH-F-cWH-cHW-cHW-cWH-cHW-cWH-F-cWH-cWH-cWH-F History status: Exact match G-quadruplex (2)	15	2
153	HL_10744.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	7	2
154	HL_51921.1 View exemplar Basepair signature: cWW-tSH-tSS-tHS-F-F-F-F-F-F-F-F-F-F-F History status: New id, 1 parent	18	2
155	HL_78284.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F-F History status: New id, 2 parents	12	2
156	HL_70658.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F History status: Exact match	12	2
157	HL_60340.1 View exemplar Basepair signature: cWW-F-F-F History status: Exact match	5	2
158	HL_86012.1 View exemplar Basepair signature: cWW-tWH-F-F-F-F History status: Exact match T-loop with unstacked turn (2)	8	2
159	HL_66103.1 View exemplar Basepair signature: cWW-F-F History status: New id, 1 parent	4	2
160	HL_56676.1 View exemplar Basepair signature: cWW-F-F History status: New id, 2 parents UNCG variation (1)	4	2
161	HL_98870.1 View exemplar Basepair signature: cWW-tSH-tWW-F-F-F-F-F History status: Exact match	11	2
162	HL_12758.3 View exemplar Basepair signature: cWW-tSH-F-cHW-F-F-cWH-cHW-cWH-cHW-cWH-cWH-F-tSH-F-cHW-F-cWH-cWH History status: Exact match G-quadruplex (2)	19	2
163	HL_25061.1 View exemplar Basepair signature: cWW-F-F-F-F History status: New id, 1 parent	6	2
164	HL_80241.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F History status: New id, 1 parent	9	2
165	HL_21372.1 View exemplar Basepair signature: cWW-F-cSH-F-F History status: Exact match	7	2
166	HL_02581.1 View exemplar Basepair signature: cWW-tSH-cWS-tSW-F-F-F History status: Exact match tRNA D-loop (2)	11	2
167	HL_89346.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F History status: Exact match	17	2
168	HL_04725.1 View exemplar Basepair signature: cWW-cWS-cWW-cWW-cWS History status: Exact match	8	2
169	HL_18565.1 View exemplar Basepair signature: cWW-cWW-F-F-F-F History status: Exact match	8	2
170	HL_43517.1 View exemplar Basepair signature: cWW-F-F-F History status: Exact match Mini UNCG (1)	5	2
171	HL_57863.1 View exemplar Basepair signature: cWW-F-F-cWH-cWH-F History status: Exact match G-quadruplex fragment (2)	9	2
172	HL_70802.1 View exemplar Basepair signature: cWW-cWS-F History status: Exact match D-loop related (1)	4	2
173	HL_08510.1 View exemplar Basepair signature: cWW-F-F-cSH-F-F History status: Exact match	8	2
174	HL_99324.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F History status: New id, 1 parent	17	2
175	HL_02782.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: New id, 1 parent	7	2
176	HL_13189.1 View exemplar Basepair signature: cWW-F-F History status: Exact match	4	2
177	HL_53504.3 View exemplar Basepair signature: cWW-tSH-F-F-F-F-F-F History status: Exact match	10	2
178	HL_71391.1 View exemplar Basepair signature: cWW-F-F-F-F History status: Exact match	6	2
179	HL_62934.1 View exemplar Basepair signature: cWW-tSH-F History status: Exact match	6	2
180	HL_26631.1 View exemplar Basepair signature: cWW-F-F-F History status: Exact match	5	2
181	HL_04852.1 View exemplar Basepair signature: cWW-F History status: New id, 1 parent	3	2
182	HL_45785.1 View exemplar Basepair signature: cWW-F-F-F-F-cSH-F-F History status: Exact match	10	2
183	HL_86883.1 View exemplar Basepair signature: cWW-F-F-F History status: New id, 1 parent	5	2
184	HL_39243.1 View exemplar Basepair signature: cWW-F-F-F-F History status: Exact match	6	2
185	HL_68257.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: Exact match	10	2
186	HL_90620.1 View exemplar Basepair signature: cWW-F-F-F-F-cSW-cSH-F History status: Exact match	11	2
187	HL_30379.1 View exemplar Basepair signature: cWW-F-F History status: New id, 1 parent Mini UNCG related (1)	4	2
188	HL_47732.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Exact match	8	2
189	HL_35941.1 View exemplar Basepair signature: cWW-F History status: Exact match	3	1
190	HL_63801.1 View exemplar Basepair signature: cWW-F-F-F-F History status: Exact match	6	1
191	HL_87463.1 View exemplar Basepair signature: cWW-cWW-F-F-F-F-F History status: Exact match	9	1
192	HL_59330.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: New id, 1 parent	7	1
193	HL_00317.1 View exemplar Basepair signature: cWW-F-cSS-F-F-F-F-F-F-F-F-F-F-F-F-F-F History status: Exact match	19	1
194	HL_23010.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Exact match	8	1
195	HL_64253.1 View exemplar Basepair signature: cWW-F-F History status: New id, no parents	4	1
196	HL_14757.1 View exemplar Basepair signature: cWW-cWW-F-F-tSW-tWW-cWW-tHW-tSW-F-cWH-F History status: Exact match	17	1
197	HL_91641.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-cSW-F-F-F-F History status: Exact match	16	1
198	HL_47854.1 View exemplar Basepair signature: cWW-F-F-F-F History status: Exact match	6	1
199	HL_59564.1 View exemplar Basepair signature: cWW-F-cSS-F-cSS-F-F-F-F-F-F-F-F-F-F-F-F History status: Exact match	20	1
200	HL_85434.1 View exemplar Basepair signature: cWW-cWW-F-F-F-F-F-F History status: Exact match	10	1
201	HL_00914.1 View exemplar Basepair signature: cWW-F-F-F-F History status: New id, no parents	6	1
202	HL_50851.1 View exemplar Basepair signature: cWW-cWH-cWH-cWH-cWH-F History status: Exact match G-quadruplex fragment (1)	9	1
203	HL_15118.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F History status: Exact match	11	1
204	HL_85461.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F-F-F-F-F History status: New id, no parents	15	1
205	HL_97983.1 View exemplar Basepair signature: cWW-F-F History status: New id, no parents	4	1
206	HL_01255.1 View exemplar Basepair signature: F-F-F-F-F-F-F-F History status: Exact match	8	1
207	HL_23509.1 View exemplar Basepair signature: cSH-F-F-F-F-F-F-F-F-F History status: Exact match	11	1
208	HL_92488.1 View exemplar Basepair signature: cWW-cWW-F-cSS-F-F-F-F-F-F History status: Exact match	13	1
209	HL_85993.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	7	1
210	HL_98252.1 View exemplar Basepair signature: cWW-tWW-F-F-F-F History status: Exact match	8	1
211	HL_28791.1 View exemplar Basepair signature: cWW-F-F-F-F History status: Exact match	6	1
212	HL_56500.1 View exemplar Basepair signature: cWW-cWW-F-cSH-F-F History status: Exact match	9	1
213	HL_93135.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Exact match Pseudoknot (1)	8	1
214	HL_07903.1 View exemplar Basepair signature: cWW-cWW-F-F-F-F-F-F-F-F-F History status: Exact match	13	1
215	HL_20781.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: Exact match	10	1
216	HL_73916.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F History status: New id, no parents	37	1
217	HL_11542.1 View exemplar Basepair signature: cWW-tSH-F-F-F-F-F-F History status: New id, no parents	10	1
218	HL_24792.1 View exemplar Basepair signature: cWW-cWS-F-F-F History status: Exact match	6	1
219	HL_52463.1 View exemplar Basepair signature: cWW-F-F-F History status: Exact match	5	1
220	HL_88558.1 View exemplar Basepair signature: cWW-tSH-F-F-F-F-F-F-F History status: Exact match	11	1
221	HL_04641.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	7	1
222	HL_16991.1 View exemplar Basepair signature: cWW-cWH-cWH-F-cWH-F History status: Exact match G-quadruplex fragment (1)	8	1
223	HL_42545.1 View exemplar Basepair signature: cWW-F-F-F-F-cSW-cSH-F History status: Exact match	7	1
224	HL_70751.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F History status: Exact match	11	1
225	HL_60914.1 View exemplar Basepair signature: cWW-F History status: Exact match	3	1
226	HL_02483.1 View exemplar Basepair signature: cWW-tWH-F-cSH-F-F-F History status: Exact match	10	1
227	HL_38046.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Exact match	8	1
228	HL_66482.1 View exemplar Basepair signature: cWW-cWW-tWW-F-F-tWH-F-F-F-F-F-F-F-F History status: Exact match	18	1
229	HL_18423.1 View exemplar Basepair signature: cWW-tSH-tHS-F History status: Exact match	7	1
230	HL_29762.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	7	1
231	HL_33983.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	7	1
232	HL_74292.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: Exact match	10	1
233	HL_99040.1 View exemplar Basepair signature: F-F-F-F-F-F History status: Exact match	6	1
234	HL_12870.1 View exemplar Basepair signature: cWW-tHW-F-F-F-F-F-F-F-F-F History status: Exact match	12	1
235	HL_80362.1 View exemplar Basepair signature: cWW-F-F-F History status: Exact match	5	1
236	HL_29958.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F History status: New id, no parents	10	1
237	HL_21400.1 View exemplar Basepair signature: cWW-tWH-tSW-cWW-cWH-cHW-cWH-cWH-cHW-cWH-cHW-cWH-cWH-cWH-cWH-cWH History status: Exact match G-quadruplex (1)	18	1
238	HL_50318.1 View exemplar Basepair signature: cWW-cSH-F-F History status: Exact match	6	1
239	HL_62041.1 View exemplar Basepair signature: cWW-cWS History status: Exact match D-loop related (1)	4	1
240	HL_80411.1 View exemplar Basepair signature: cWW-F-cSH-F-F-F-F History status: Exact match	9	1
241	HL_18978.1 View exemplar Basepair signature: cWW-F-F-tHW-F-F-F History status: Exact match	9	1
242	HL_29966.1 View exemplar Basepair signature: cWW-F-F-F History status: New id, 1 parent	5	1
243	HL_08602.1 View exemplar Basepair signature: cWW-cSS-F-cSS-F-F-F-F-F History status: Exact match	11	1
244	HL_22135.1 View exemplar Basepair signature: cWW-F-F History status: Exact match	4	1
245	HL_35354.1 View exemplar Basepair signature: cWW-cWH-cHW-F-cWH-cHW-F-F-tHH-cWH-tWW-cWH-F-tWW-cWH-F-cWH History status: Exact match	21	1
246	HL_99748.1 View exemplar Basepair signature: cWW-F-F-cSH History status: Exact match D-loop related (1)	6	1
247	HL_13877.1 View exemplar Basepair signature: cWW-F-F History status: Exact match	4	1
248	HL_58224.1 View exemplar Basepair signature: cWW-F-F-F-F-F History status: Exact match	7	1
249	HL_71925.1 View exemplar Basepair signature: F-F-F-F-F-F-F-F-F-F-F-F History status: Exact match	12	1
250	HL_94980.1 View exemplar Basepair signature: cWW-F-F History status: New id, no parents	4	1
251	HL_63355.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F-F-F-F-F-F History status: Exact match	13	1
252	HL_26934.1 View exemplar Basepair signature: cWW-F-F-F-F-F-F History status: Exact match	8	1
253	HL_58539.1 View exemplar Basepair signature: cWW-tWS-F-tHW-F-F-F-F-F-F-F-F History status: Exact match	13	1
254	HL_72628.1 View exemplar Basepair signature: cWW-tSH-F-F-F-F History status: New id, 1 parent	8	1
255	HL_84847.1 View exemplar Basepair signature: cWW-F-F-F-F-tWW-F-F-F-F-F-F History status: Exact match	14	1
256	HL_97733.1 View exemplar Basepair signature: cWW-F-F-F-cSH-F History status: Exact match	8	1

Coloring options:
Nucleotide numbers

Exact match 143; New id, no parents 10; Updated, 1 parent 67; New id, 1 parent 23; New id, 2 parents 10; Updated, 2 parents 3;

Hairpin Loop Motif Atlas Release 3.95 Download CSV JSON annotations

Hairpin Loop Motif Atlas Release 3.95

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