RNA 3D Hub //

Equivalence class DNA_4.0_33361.1 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
13BBB|1|G (rep)DNA (5'-D(*AP*G)-3')synthetic constructCrystal structure of the NM23-H2 transcription factor complex with dinucleotide d(AG)X-ray diffraction1.32008-09-23
23BBB|1|HDNA (5'-D(*AP*G)-3')synthetic constructCrystal structure of the NM23-H2 transcription factor complex with dinucleotide d(AG)X-ray diffraction1.32008-09-23
33BBB|1|IDNA (5'-D(*AP*G)-3')synthetic constructCrystal structure of the NM23-H2 transcription factor complex with dinucleotide d(AG)X-ray diffraction1.32008-09-23
43BBB|1|JDNA (5'-D(*AP*G)-3')synthetic constructCrystal structure of the NM23-H2 transcription factor complex with dinucleotide d(AG)X-ray diffraction1.32008-09-23
51F0V|1|M5'-D(*CP*G)-3'Crystal structure of an Rnase A dimer displaying a new type of 3D domain swappingX-ray diffraction1.72001-02-21
61F0V|1|N5'-D(*CP*G)-3'Crystal structure of an Rnase A dimer displaying a new type of 3D domain swappingX-ray diffraction1.72001-02-21
71F0V|1|O5'-D(*CP*G)-3'Crystal structure of an Rnase A dimer displaying a new type of 3D domain swappingX-ray diffraction1.72001-02-21
81F0V|1|P5'-D(*CP*G)-3'Crystal structure of an Rnase A dimer displaying a new type of 3D domain swappingX-ray diffraction1.72001-02-21
92OK0|1|D5'-D(*TP*C)-3'Fab ED10-DNA complexX-ray diffraction1.892007-06-12
101I8M|1|D5'-D(P*TP*T)-3'CRYSTAL STRUCTURE OF A RECOMBINANT ANTI-SINGLE-STRANDED DNA ANTIBODY FRAGMENT COMPLEXED WITH DT5X-ray diffraction2.12001-12-07
111OUP|1|G5'-D(P*GP*C)-3'Crystal structure of the periplasmic endonuclease Vvn complexed with octamer double stranded DNAX-ray diffraction2.32003-08-05
121XAM|1|DTGCobalt hexammine induced tautameric shift in Z-DNA: structure of d(CGCGCA).d(TGCGCG) in two crystal forms.X-ray diffraction1.862004-11-16
131XAM|1|ETGCobalt hexammine induced tautameric shift in Z-DNA: structure of d(CGCGCA).d(TGCGCG) in two crystal forms.X-ray diffraction1.862004-11-16
141PV4|1|G5'-D(P*CP*C)-3'X-ray crystal structure of the Rho transcription termination factor in complex with single stranded DNAX-ray diffraction32003-07-22
151PV4|1|H5'-D(P*CP*C)-3'X-ray crystal structure of the Rho transcription termination factor in complex with single stranded DNAX-ray diffraction32003-07-22
161PV4|1|J5'-D(P*CP*C)-3'X-ray crystal structure of the Rho transcription termination factor in complex with single stranded DNAX-ray diffraction32003-07-22
171PV4|1|K5'-D(P*CP*C)-3'X-ray crystal structure of the Rho transcription termination factor in complex with single stranded DNAX-ray diffraction32003-07-22
181PV4|1|L5'-D(P*CP*C)-3'X-ray crystal structure of the Rho transcription termination factor in complex with single stranded DNAX-ray diffraction32003-07-22
192PJR|1|HDNA (5'-D(*GP*C)-3')HELICASE PRODUCT COMPLEXX-ray diffraction2.91999-04-08
202DWL|1|E5'-D(*AP*(DC))-3'Crystal structure of the PriA protein complexed with oligonucleotidesX-ray diffraction3.22006-11-07
212DWL|1|F5'-D(*AP*(DC))-3'Crystal structure of the PriA protein complexed with oligonucleotidesX-ray diffraction3.22006-11-07
222D7G|1|EDNA (5'-D(P*AP*A)-3')synthetic constructCrystal structure of the aa complex of the N-terminal domain of PriAX-ray diffraction3.32006-11-07
232D7G|1|FDNA (5'-D(P*AP*A)-3')synthetic constructCrystal structure of the aa complex of the N-terminal domain of PriAX-ray diffraction3.32006-11-07
242D7G|1|GDNA (5'-D(P*AP*A)-3')synthetic constructCrystal structure of the aa complex of the N-terminal domain of PriAX-ray diffraction3.32006-11-07
252D7G|1|HDNA (5'-D(P*AP*A)-3')synthetic constructCrystal structure of the aa complex of the N-terminal domain of PriAX-ray diffraction3.32006-11-07
262DWM|1|E5'-D(*AP*T)-3'Crystal structure of the PriA protein complexed with oligonucleotidesX-ray diffraction3.152006-11-07
272DWM|1|F5'-D(*AP*T)-3'Crystal structure of the PriA protein complexed with oligonucleotidesX-ray diffraction3.152006-11-07
282DWM|1|G5'-D(*AP*T)-3'Crystal structure of the PriA protein complexed with oligonucleotidesX-ray diffraction3.152006-11-07
292HTT|1|DDNA (5'-D(P*DTP*DG)-3')Ruthenium Hexammine ion interactions with Z-DNAX-ray diffraction2.62006-08-08
302HTT|1|EDNA (5'-D(P*DTP*DG)-3')Ruthenium Hexammine ion interactions with Z-DNAX-ray diffraction2.62006-08-08
312DWN|1|EDNA (5'-D(*A*G)-3')synthetic constructCrystal structure of the PriA protein complexed with oligonucleotidesX-ray diffraction3.352006-11-07
322DWN|1|FDNA (5'-D(*A*G)-3')synthetic constructCrystal structure of the PriA protein complexed with oligonucleotidesX-ray diffraction3.352006-11-07
331DN8|1|ADNA (5'-D(*P*CP*GP*TP*AP*CP*GP*TP*AP*CP*G)-3')STRUCTURE OF A Z-DNA WITH TWO DIFFERENT BACKBONE CHAIN CONFORMATIONS. STABILIZATION OF THE DECADEOXYOLIGONUCLEOTIDE D(CGTACGTACG) BY (CO(NH3)6)3+ BINDING TO THE GUANINEX-ray diffraction1.51988-04-16
341D53|1|ADNA (5'-D(*CP*GP*CP*IP*CP*IP*CP*G)-3')CRYSTAL STRUCTURE AT 1.5 ANGSTROMS RESOLUTION OF D(CGCICICG), AN OCTANUCLEOTIDE CONTAINING INOSINE, AND ITS COMPARISON WITH D(CGCG) AND D(CGCGCG) STRUCTURESX-ray diffraction1.51993-04-13
351DN8|1|BDNA (5'-D(*P*CP*GP*TP*AP*CP*GP*TP*AP*CP*G)-3')STRUCTURE OF A Z-DNA WITH TWO DIFFERENT BACKBONE CHAIN CONFORMATIONS. STABILIZATION OF THE DECADEOXYOLIGONUCLEOTIDE D(CGTACGTACG) BY (CO(NH3)6)3+ BINDING TO THE GUANINEX-ray diffraction1.51988-04-16
361D53|1|BDNA (5'-D(*CP*GP*CP*IP*CP*IP*CP*G)-3')CRYSTAL STRUCTURE AT 1.5 ANGSTROMS RESOLUTION OF D(CGCICICG), AN OCTANUCLEOTIDE CONTAINING INOSINE, AND ITS COMPARISON WITH D(CGCG) AND D(CGCGCG) STRUCTURESX-ray diffraction1.51993-04-13
37279D|1|ADNA (5'-D(*GP*CP*GP*CP*GP*CP*GP*CP*GP*C)-3'CRYSTAL STRUCTURE OF THE SELF-COMPLEMENTARY 5'-PURINE START DECAMER D(GCGCGCGCGC) IN THE Z-DNA CONFORMATION-PART IX-ray diffraction1.91996-06-27
381RNB|1|CDNA (5'-D(*GP*C)-3')CRYSTAL STRUCTURE OF A BARNASE-D(*GP*C) COMPLEX AT 1.9 ANGSTROMS RESOLUTIONX-ray diffraction1.91992-07-15
391EHL|1|A5'-(D(5HT)P*(6-4)T)-3'64M-2 ANTIBODY FAB COMPLEXED WITH D(5HT)(6-4)TX-ray diffraction2.42001-02-21
401IJS|1|ADNA (5'-D(*AP*C)-3')Canine parvovirusCPV (STRAIN D) mutant A300D, complex (VIRAL COAT/DNA), VP2, PH=7.5, T=4 DEGREES CX-ray diffraction3.251996-12-23

Release history

Release0.10.2
Date2011-02-052011-02-12

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLengthNAKB NA annotationNAKB protein annotation

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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