Equivalence class DNA_4.0_34684.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 2GIG|1|E+ 2GIG|1|F (rep) | 5'-D(*GP*CP*CP*GP*GP*TP*CP*GP*AP*CP*CP*GP*GP*C)-3' | Alteration of sequence specificity of the type II restriction endonuclease HINCII through an indirect readout mechanism | X-ray diffraction | 1.83 | 2006-07-18 | ||||
| 2 | 3E40|1|E+ 3E40|1|F | 5'-D(*DGP*DCP*DCP*DGP*DGP*DTP*DP*DAP*DAP*DCP*DCP*DGP*DGP*DC)-3') | Q138F HincII bound to GTTAAC and cocrystallized with 5 mM Ca2+ | X-ray diffraction | 2.1 | 2008-08-26 | ||||
| 3 | 3E3Y|1|E+ 3E3Y|1|F | 5'-D(*DGP*DCP*DCP*DGP*DGP*DTP*DTP*DAP*DAP*DCP*DCP*DGP*DGP*DC)-3' | Q138F HincII bound to GTTAAC and cocrystallized with 5 mM Ca2+ | X-ray diffraction | 2.13 | 2008-08-26 | ||||
| 4 | 2GIJ|1|E+ 2GIJ|1|F | 5'-D(*GP*CP*CP*GP*GP*TP*TP*AP*AP*CP*CP*GP*GP*C)-3' | Q138F HincII bound to cognate DNA GTTAAC and Ca2+ | X-ray diffraction | 1.93 | 2006-07-18 | ||||
| 5 | 2GII|1|E+ 2GII|1|F | 5'-D(*GP*CP*CP*GP*GP*TP*TP*AP*AP*CP*CP*GP*GP*C)-3' | Q138F HincII bound to cognate DNA GTTAAC | X-ray diffraction | 2.3 | 2006-07-18 | ||||
| 6 | 2GIH|1|E+ 2GIH|1|F | 5'-D(*GP*CP*CP*GP*GP*TP*CP*GP*AP*CP*CP*GP*GP*C)-3' | Q138F HincII bound to cognate DNA GTCGAC and Ca2+ | X-ray diffraction | 2.5 | 2006-07-18 | ||||
| 7 | 3E41|1|E+ 3E41|1|F | 5'-D(*DGP*DCP*DCP*DGP*DGP*DTP*DCP*DGP*DAP*DCP*DCP*DGP*DGP*DC)-3' | Q138F HincII bound to GTCGAC and 5 mM Ca2+ | X-ray diffraction | 2.73 | 2008-08-26 | ||||
| 8 | 3E42|1|E+ 3E42|1|F | 5'-D(*DGP*DCP*DCP*DGP*DGP*DTP*DCP*DGP*DAP*DCP*DCP*DGP*DGP*DC)-3' | Q138F HincII bound to GTCGAC and Ca2+ (cocrystallized) | X-ray diffraction | 2.68 | 2008-08-26 | ||||
| 9 | 3E43|1|E+ 3E43|1|F | 5'-D(*DGP*DCP*DCP*DGP*DGP*DTP*DTP*DAP*DAP*DCP*DCP*DGP*DGP*DC)-3' | Q138F HincII bound to GTTAAC and cocrystallized with 2.5 mM MgCl2 | X-ray diffraction | 2.73 | 2008-08-26 | ||||
| 10 | 3E45|1|E+ 3E45|1|F | 5'-D(*DGP*DCP*DCP*DGP*DGP*DTP*DGP*DCP*DAP*DCP*DCP*DGP*DGP*DC)-3' | Q138F HincII bound to Noncognate DNA (GTGCAC) and Ca2+ | X-ray diffraction | 2.78 | 2008-08-26 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length | NAKB NA annotation | NAKB protein annotation |
|---|---|---|---|---|---|---|---|---|
| 1 | 2GII|1|E+ 2GII|1|F | Q138F HincII bound to cognate DNA GTTAAC | X-RAY DIFFRACTION | 2.3 | 14 | double helix,structure | enzyme,hydrolase,nuclease | |
| 2 | 3E43|1|E+ 3E43|1|F | Q138F HincII bound to GTTAAC and cocrystallized with 2.5 mM MgCl2 | X-RAY DIFFRACTION | 2.73 | 14 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease | |
| 3 | 2GIJ|1|E+ 2GIJ|1|F | Q138F HincII bound to cognate DNA GTTAAC and Ca2+ | X-RAY DIFFRACTION | 1.93 | 14 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease | |
| 4 | 3E3Y|1|E+ 3E3Y|1|F | Q138F HincII bound to GTTAAC and cocrystallized with 5 mM Ca2+ | X-RAY DIFFRACTION | 2.13 | 14 | double helix,structure | enzyme,hydrolase,nuclease | |
| 5 | 3E40|1|E+ 3E40|1|F | Q138F HincII bound to GTTAAC and cocrystallized with 5 mM Ca2+ | X-RAY DIFFRACTION | 2.1 | 14 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease | |
| 6 | 3E45|1|E+ 3E45|1|F | Q138F HincII bound to Noncognate DNA (GTGCAC) and Ca2+ | X-RAY DIFFRACTION | 2.78 | 14 | double helix,structure | enzyme,hydrolase,nuclease | |
| 7 | 3E41|1|E+ 3E41|1|F | Q138F HincII bound to GTCGAC and 5 mM Ca2+ | X-RAY DIFFRACTION | 2.73 | 14 | double helix,structure | enzyme,hydrolase,nuclease | |
| 8 | 3E42|1|E+ 3E42|1|F | Q138F HincII bound to GTCGAC and Ca2+ (cocrystallized) | X-RAY DIFFRACTION | 2.68 | 14 | double helix,structure | enzyme,hydrolase,nuclease | |
| 9 | 2GIG|1|E+ 2GIG|1|F | Alteration of sequence specificity of the type II restriction endonuclease HINCII through an indirect readout mechanism | X-RAY DIFFRACTION | 1.83 | 14 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease | |
| 10 | 2GIH|1|E+ 2GIH|1|F | Q138F HincII bound to cognate DNA GTCGAC and Ca2+ | X-RAY DIFFRACTION | 2.5 | 14 | B-form double helix,double helix,structure | enzyme,hydrolase,nuclease |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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