Equivalence class DNA_4.0_58497.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 3HT3|1|C+ 3HT3|1|B (rep) | 5'-D(*AP*CP*GP*GP*CP*GP*TP*GP*AP*TP*CP*G)-3', 5'-D(*CP*GP*AP*TP*CP*AP*CP*GP*(DOC))-3' | Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus V713P mutant bound to G:dCTP | X-ray diffraction | 1.7 | 2010-07-14 | ||||
| 2 | 3HT3|1|F+ 3HT3|1|E | 5'-D(*AP*CP*GP*GP*CP*GP*TP*GP*AP*TP*CP*G)-3', 5'-D(*CP*GP*AP*TP*CP*AP*CP*GP*(DOC))-3' | Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus V713P mutant bound to G:dCTP | X-ray diffraction | 1.7 | 2010-07-14 | ||||
| 3 | 3HP6|1|C+ 3HP6|1|B | 5'-D(*AP*CP*GP*CP*CP*GP*TP*GP*AP*TP*CP*G)-3', 5'-D(*CP*GP*AP*TP*CP*AP*CP*GP*(DDG))-3' | Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus F710Y mutant bound to G:T mismatch | X-ray diffraction | 1.81 | 2010-06-23 | ||||
| 4 | 3HP6|1|F+ 3HP6|1|E | 5'-D(*AP*CP*GP*CP*CP*GP*TP*GP*AP*TP*CP*G)-3', 5'-D(*CP*GP*AP*TP*CP*AP*CP*GP*(DDG))-3' | Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus F710Y mutant bound to G:T mismatch | X-ray diffraction | 1.81 | 2010-06-23 | ||||
| 5 | 3EZ5|1|C+ 3EZ5|1|B | 5'-D(*DAP*DTP*DTP*DCP*DGP*DAP*DGP*DTP*DCP*DAP*DGP*DG)-3', 5'-D(*DCP*DCP*DTP*DGP*DAP*DCP*DTP*DCP*DG)-3' | Cocrystal structure of Bacillus fragment DNA polymerase I with duplex DNA , dCTP, and zinc (closed form). | X-ray diffraction | 1.9 | 2009-11-10 | ||||
| 6 | 3EZ5|1|F+ 3EZ5|1|E | 5'-D(*DAP*DTP*DTP*DCP*DGP*DAP*DGP*DTP*DCP*DAP*DGP*DG)-3', 5'-D(*DCP*DCP*DTP*DGP*DAP*DCP*DTP*DCP*DG)-3' | Cocrystal structure of Bacillus fragment DNA polymerase I with duplex DNA , dCTP, and zinc (closed form). | X-ray diffraction | 1.9 | 2009-11-10 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length | NAKB NA annotation | NAKB protein annotation |
|---|---|---|---|---|---|---|---|---|
| 1 | 3HT3|1|C+ 3HT3|1|B | Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus V713P mutant bound to G:dCTP | X-RAY DIFFRACTION | 1.7 | 12 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 2 | 3HP6|1|C+ 3HP6|1|B | Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus F710Y mutant bound to G:T mismatch | X-RAY DIFFRACTION | 1.81 | 12 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 3 | 3HP6|1|F+ 3HP6|1|E | Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus F710Y mutant bound to G:T mismatch | X-RAY DIFFRACTION | 1.81 | 12 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 4 | 3HT3|1|F+ 3HT3|1|E | Crystal structure of fragment DNA polymerase I from Bacillus stearothermophilus V713P mutant bound to G:dCTP | X-RAY DIFFRACTION | 1.7 | 12 | B-form double helix,double helix,structure | enzyme,polymerase,transferase | |
| 5 | 3EZ5|1|F+ 3EZ5|1|E | Cocrystal structure of Bacillus fragment DNA polymerase I with duplex DNA , dCTP, and zinc (closed form). | X-RAY DIFFRACTION | 1.9 | 12 | double helix,structure | enzyme,polymerase,transferase | |
| 6 | 3EZ5|1|C+ 3EZ5|1|B | Cocrystal structure of Bacillus fragment DNA polymerase I with duplex DNA , dCTP, and zinc (closed form). | X-RAY DIFFRACTION | 1.9 | 12 | double helix,structure | enzyme,polymerase,transferase |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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