Equivalence class DNA_4.0_68572.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 3C29|1|E+ 3C29|1|F (rep) | LoxP DNA, chain D,F, LoxP DNA, chain E | Cre-loxP Synaptic structure | X-ray diffraction | 2.2 | 68 | 2009-02-17 | ||||
| 2 | 2IEF|1|F+ 2IEF|1|E+ 2IEF|1|D | 15-mer DNA, 19-mer DNA, 34-mer DNA | Structure of the cooperative Excisionase (Xis)-DNA complex reveals a micronucleoprotein filament | X-ray diffraction | 2.601 | 68 | 2007-02-06 | ||||
| 3 | 1MA7|1|C+ 1MA7|1|D | LOXP | Crystal structure of Cre site-specific recombinase complexed with a mutant DNA substrate, LoxP-A8/T27 | X-ray diffraction | 2.3 | 66 | 2003-07-08 | ||||
| 4 | 1KBU|1|C+ 1KBU|1|D | LOXP | CRE RECOMBINASE BOUND TO A LOXP HOLLIDAY JUNCTION | X-ray diffraction | 2.2 | 68 | 2002-06-07 | ||||
| 5 | 3C28|1|C+ 3C28|1|D | LoxP DNA, chain C, LoxP DNA, chain D | Crystal structure of the product synapse complex | X-ray diffraction | 2.6 | 68 | 2009-02-17 | ||||
| 6 | 2XMA|1|D | DRA2 TRANSPOSASE RIGHT END RECOGNITION SITE | Deinococcus radiodurans | DEINOCOCCUS RADIODURANS ISDRA2 TRANSPOSASE RIGHT END DNA COMPLEX | X-ray diffraction | 2.3 | 34 | 2010-10-13 | |||
| 7 | 2XMA|1|C | DRA2 TRANSPOSASE RIGHT END RECOGNITION SITE | Deinococcus radiodurans | DEINOCOCCUS RADIODURANS ISDRA2 TRANSPOSASE RIGHT END DNA COMPLEX | X-ray diffraction | 2.3 | 34 | 2010-10-13 | |||
| 8 | 1PVP|1|C+ 1PVP|1|D | 34-MER | Punavirus P1 | BASIS FOR A SWITCH IN SUBSTRATE SPECIFICITY: CRYSTAL STRUCTURE OF SELECTED VARIANT OF CRE SITE-SPECIFIC RECOMBINASE, ALSHG BOUND TO THE ENGINEERED RECOGNITION SITE LOXM7 | X-ray diffraction | 2.35 | 67 | 2004-02-17 | |||
| 9 | 1PVR|1|C+ 1PVR|1|D | 34-MER | BASIS FOR A SWITCH IN SUBSTRATE SPECIFICITY: CRYSTAL STRUCTURE OF SELECTED VARIANT OF CRE SITE-SPECIFIC RECOMBINASE, LNSGG BOUND TO THE LOXP (WILDTYPE) RECOGNITION SITE | X-ray diffraction | 2.65 | 67 | 2004-02-17 | ||||
| 10 | 1PVQ|1|C+ 1PVQ|1|D | DNA 34-MER | Punavirus P1 | BASIS FOR A SWITCH IN SUBSTRATE SPECIFICITY: CRYSTAL STRUCTURE OF SELECTED VARIANT OF CRE SITE-SPECIFIC RECOMBINASE, LNSGG BOUND TO THE ENGINEERED RECOGNITION SITE LOXM7 | X-ray diffraction | 2.75 | 68 | 2004-02-17 | |||
| 11 | 2XMA|1|G | DRA2 TRANSPOSASE RIGHT END RECOGNITION SITE | Deinococcus radiodurans | DEINOCOCCUS RADIODURANS ISDRA2 TRANSPOSASE RIGHT END DNA COMPLEX | X-ray diffraction | 2.3 | 34 | 2010-10-13 | |||
| 12 | 3KSB|1|E+ 3KSB|1|F | 5'-D(*AP*CP*CP*AP*AP*GP*GP*T*CP*AP*TP*GP*AP*AP*TP*GP*AP*CP*TP*AP*TP*GP*CP*AP*CP*GP*TP*AP*AP*AP*AP*CP*AP*G)-3', 5'-D(*CP*TP*GP*TP*TP*TP*TP*A*CP*GP*TP*GP*CP*AP*TP*AP*GP*TP*CP*AP*TP*TP*CP*AP*TP*GP*AP*CP*CP*TP*TP*GP*GP*T)-3' | Detailed structural insight into the DNA cleavage complex of type IIA topoisomerases (re-sealed form) | X-ray diffraction | 3.5 | 36 | 2010-05-05 | ||||
| 13 | 2XMA|1|H | DRA2 TRANSPOSASE RIGHT END RECOGNITION SITE | Deinococcus radiodurans | DEINOCOCCUS RADIODURANS ISDRA2 TRANSPOSASE RIGHT END DNA COMPLEX | X-ray diffraction | 2.3 | 33 | 2010-10-13 | |||
| 14 | 2XKK|1|E+ 2XKK|1|F | DNA | synthetic construct | CRYSTAL STRUCTURE OF MOXIFLOXACIN, DNA, and A. BAUMANNII TOPO IV (PARE-PARC FUSION TRUNCATE) | X-ray diffraction | 3.25 | 52 | 2010-09-01 | |||
| 15 | 1EGK|1|B+ 1EGK|1|D+ 1EGK|1|A+ 1EGK|1|C | 10-23 DNA ENZYME, RNA (5'-R(*AP*GP*GP*AP*GP*AP*GP*AP*GP*AP*UP*GP*GP*GP*UP*GP*CP*GP*AP*G)-3') | CRYSTAL STRUCTURE OF A NUCLEIC ACID FOUR-WAY JUNCTION | X-ray diffraction | 3.1 | 108 | 2000-06-26 | ||||
| 16 | 1JEY|1|D+ 1JEY|1|C | DNA (34-MER), DNA (5'-D(*GP*TP*TP*TP*TP*TP*AP*GP*TP*TP*TP*AP*TP*TP*GP*GP*GP*CP*GP*CP*G)-3') | Crystal Structure of the Ku heterodimer bound to DNA | X-ray diffraction | 2.5 | 49 | 2001-08-10 |
Release history
| Release | 0.6 |
|---|---|
| Date | 2011-03-05 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs | NAKB NA annotation | NAKB protein annotation |
|---|---|---|---|---|---|---|---|---|
| 1 | 1PVP|1|C+ 1PVP|1|D | BASIS FOR A SWITCH IN SUBSTRATE SPECIFICITY: CRYSTAL STRUCTURE OF SELECTED VARIANT OF CRE SITE-SPECIFIC RECOMBINASE, ALSHG BOUND TO THE ENGINEERED RECOGNITION SITE LOXM7 | X-RAY DIFFRACTION | 2.35 | 67 | enzyme,recombinase | ||
| 2 | 1PVR|1|C+ 1PVR|1|D | BASIS FOR A SWITCH IN SUBSTRATE SPECIFICITY: CRYSTAL STRUCTURE OF SELECTED VARIANT OF CRE SITE-SPECIFIC RECOMBINASE, LNSGG BOUND TO THE LOXP (WILDTYPE) RECOGNITION SITE | X-RAY DIFFRACTION | 2.65 | 67 | enzyme,recombinase | ||
| 3 | 1KBU|1|C+ 1KBU|1|D | CRE RECOMBINASE BOUND TO A LOXP HOLLIDAY JUNCTION | X-RAY DIFFRACTION | 2.2 | 68 | enzyme,recombinase | ||
| 4 | 1PVQ|1|C+ 1PVQ|1|D | BASIS FOR A SWITCH IN SUBSTRATE SPECIFICITY: CRYSTAL STRUCTURE OF SELECTED VARIANT OF CRE SITE-SPECIFIC RECOMBINASE, LNSGG BOUND TO THE ENGINEERED RECOGNITION SITE LOXM7 | X-RAY DIFFRACTION | 2.75 | 68 | enzyme,recombinase | ||
| 5 | 2XKK|1|E+ 2XKK|1|F | CRYSTAL STRUCTURE OF MOXIFLOXACIN, DNA, and A. BAUMANNII TOPO IV (PARE-PARC FUSION TRUNCATE) | X-RAY DIFFRACTION | 3.25 | 52 | double helix,structure | enzyme,isomerase | |
| 6 | 3KSB|1|E+ 3KSB|1|F | Detailed structural insight into the DNA cleavage complex of type IIA topoisomerases (re-sealed form) | X-RAY DIFFRACTION | 3.5 | 36 | double helix,structure | enzyme,isomerase | |
| 7 | 2IEF|1|F+ 2IEF|1|E+ 2IEF|1|D | Structure of the cooperative Excisionase (Xis)-DNA complex reveals a micronucleoprotein filament | X-RAY DIFFRACTION | 2.601 | 68 | B-form double helix,double helix,structure | enzyme,recombinase | |
| 8 | 3C28|1|C+ 3C28|1|D | Crystal structure of the product synapse complex | X-RAY DIFFRACTION | 2.6 | 68 | enzyme,recombinase | ||
| 9 | 1MA7|1|C+ 1MA7|1|D | Crystal structure of Cre site-specific recombinase complexed with a mutant DNA substrate, LoxP-A8/T27 | X-RAY DIFFRACTION | 2.3 | 66 | enzyme,recombinase | ||
| 10 | 3C29|1|E+ 3C29|1|F | Cre-loxP Synaptic structure | X-RAY DIFFRACTION | 2.2 | 68 | enzyme,recombinase | ||
| 11 | 1JEY|1|D+ 1JEY|1|C | Crystal Structure of the Ku heterodimer bound to DNA | X-RAY DIFFRACTION | 2.5 | 49 | DNA replication/repair,enzyme,helicase,hydrolase,regulatory | ||
| 12 | 2XMA|1|C | DEINOCOCCUS RADIODURANS ISDRA2 TRANSPOSASE RIGHT END DNA COMPLEX | X-RAY DIFFRACTION | 2.3 | 34 | enzyme,recombinase | ||
| 13 | 2XMA|1|G | DEINOCOCCUS RADIODURANS ISDRA2 TRANSPOSASE RIGHT END DNA COMPLEX | X-RAY DIFFRACTION | 2.3 | 34 | enzyme,recombinase | ||
| 14 | 2XMA|1|H | DEINOCOCCUS RADIODURANS ISDRA2 TRANSPOSASE RIGHT END DNA COMPLEX | X-RAY DIFFRACTION | 2.3 | 33 | enzyme,recombinase | ||
| 15 | 2XMA|1|D | DEINOCOCCUS RADIODURANS ISDRA2 TRANSPOSASE RIGHT END DNA COMPLEX | X-RAY DIFFRACTION | 2.3 | 34 | enzyme,recombinase | ||
| 16 | 1EGK|1|B+ 1EGK|1|D+ 1EGK|1|A+ 1EGK|1|C | CRYSTAL STRUCTURE OF A NUCLEIC ACID FOUR-WAY JUNCTION | X-RAY DIFFRACTION | 3.1 | 108 | Holliday junction,structure |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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