#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
12NTC|1|C+ 2NTC|1|W (rep)21-nt PEN element of the SV40 DNA originCrystal Structure of sv40 large T antigen origin binding domain with DNAX-ray diffraction2.42007-02-13
22HOS|1|C+ 2HOS|1|D5'-D(*AP*TP*CP*CP*GP*GP*GP*GP*AP*TP*TP*AP*CP*AP*TP*GP*GP*CP*AP*AP*A)-3', 5'-D(*TP*TP*TP*TP*GP*CP*CP*AP*TP*GP*TP*AP*AP*TP*CP*CP*CP*CP*GP*GP*A)-3'Phage-Selected Homeodomain Bound to Unmodified DNAX-ray diffraction1.92006-12-12
32A07|1|A+ 2A07|1|B5'-D(*AP*AP*CP*TP*AP*TP*GP*AP*AP*AP*CP*AP*AP*AP*TP*TP*TP*TP*CP*CP*T)-3', 5'-D(*TP*TP*AP*GP*GP*AP*AP*AP*AP*TP*TP*TP*GP*TP*TP*TP*CP*AP*TP*AP*G)-3'Crystal Structure of Foxp2 bound Specifically to DNA.X-ray diffraction1.92006-01-31
42A07|1|C+ 2A07|1|D5'-D(*AP*AP*CP*TP*AP*TP*GP*AP*AP*AP*CP*AP*AP*AP*TP*TP*TP*TP*CP*CP*T)-3', 5'-D(*TP*TP*AP*GP*GP*AP*AP*AP*AP*TP*TP*TP*GP*TP*TP*TP*CP*AP*TP*AP*G)-3'Crystal Structure of Foxp2 bound Specifically to DNA.X-ray diffraction1.92006-01-31
52HOT|1|C+ 2HOT|1|D5'-D(*AP*TP*CP*CP*GP*GP*GP*GP*AP*TP*TP*AP*CP*AP*TP*GP*GP*CP*AP*AP*A)-3', 5'-D(*TP*TP*TP*TP*GP*CP*CP*AP*TP*GP*TP*AP*AP*TP*CP*CP*CP*CP*GP*GP*A)-3'Phage selected homeodomain bound to modified DNAX-ray diffraction2.192006-12-12
62RBF|1|C+ 2RBF|1|DDNA (5'-D(*DTP*DT*DTP*DGP*DCP*DGP*DGP*DTP*DTP*DGP*DCP*DAP*DCP*DCP*DTP*DTP*DTP*DCP*DAP*DAP*DA)-3'), DNA (5'-D(*DTP*DTP*DTP*DGP*DAP*DAP*DAP*DGP*DGP*DTP*DGP*DCP*DAP*DAP*DCP*DCP*DGP*DCP*DAP*DAP*DA)-3')Structure of the ribbon-helix-helix domain of Escherichia coli PutA (PutA52) complexed with operator DNA (O2)X-ray diffraction2.252008-07-29
72O6M|1|C+ 2O6M|1|D5'-D(*DTP*DTP*DGP*DAP*DCP*DTP*DCP*DTP*DCP*DTP*DTP*DAP*DAP*DGP*DAP*DGP*DAP*DGP*DTP*DCP*DA)-3'H98Q mutant of the homing endonuclease I-PPOI complexed with DNAX-ray diffraction2.32007-10-30
83G73|1|C+ 3G73|1|DDNA (5'-D(P*AP*AP*AP*TP*TP*GP*TP*TP*TP*AP*TP*AP*AP*AP*CP*AP*GP*CP*CP*CP*G)-3'), DNA (5'-D(P*TP*TP*CP*GP*GP*GP*CP*TP*GP*TP*TP*TP*AP*TP*AP*AP*AP*CP*AP*AP*T)-3')Structure of the FOXM1 DNA bindingX-ray diffraction2.212009-03-03
93KZ8|1|CDNA (5'-D(*TP*GP*GP*GP*CP*AP*TP*GP*CP*CP*CP*GP*GP*GP*CP*AP*TP*GP*CP*CP*C)-3')Diversity in DNA recognition by p53 revealed by crystal structures with Hoogsteen base pairs (p53-DNA complex 3)X-ray diffraction1.912010-03-31
101ZRF|1|X+ 1ZRF|1|Z+ 1ZRF|1|W+ 1ZRF|1|Y5'-D(*AP*TP*TP*TP*CP*GP*AP*AP*AP*AP*AP*TP*GP*CP*GP*AP*T)-3', 5'-D(*CP*TP*AP*GP*AP*TP*CP*GP*CP*AP*TP*TP*TP*TP*TP*CP*GP*AP*AP*AP*T)-3'4 crystal structures of CAP-DNA with all base-pair substitutions at position 6, CAP-[6C;17G]ICAP38 DNAX-ray diffraction2.12006-03-21
111K61|1|E+ 1K61|1|F5'-D(*(5IU)P*GP*CP*GP*TP*GP*TP*AP*AP*AP*TP*GP*AP*AP*TP*TP*AP*CP*AP*TP*G)-3', 5'-D(*AP*CP*AP*TP*GP*TP*AP*AP*TP*TP*CP*AP*TP*TP*TP*AP*CP*AP*CP*GP*C)-3'MATALPHA2 HOMEODOMAIN BOUND TO DNAX-ray diffraction2.12002-12-11
121TC3|1|A+ 1TC3|1|BDNA (5'-D(*AP*GP*GP*GP*GP*GP*GP*GP*TP*CP*CP*TP*AP*TP*AP*GP*A P*AP*CP*TP*T)-3'), DNA (5'-D(*AP*GP*TP*TP*CP*TP*AP*TP*AP*GP*GP*AP*CP*CP*CP*CP*C P*CP*CP*T)-3')TRANSPOSASE TC3A1-65 FROM CAENORHABDITIS ELEGANSX-ray diffraction2.451997-11-21
131AWC|1|D+ 1AWC|1|EDNA (5'-D(*AP*AP*(BRU)P*GP*AP*CP*CP*GP*GP*AP*AP*GP*TP*AP*(CBR)P*AP*CP*(CBR)P*GP*GP*A)-3'), DNA (5'-D(*TP*TP*CP*CP*GP*GP*(BRU)P*GP*(BRU)P*AP*CP*TP*TP*CP*CP*GP*GP*TP*CP*AP*T)-3')MOUSE GABP ALPHA/BETA DOMAIN BOUND TO DNAX-ray diffraction2.151998-03-18
142EZV|1|F+ 2EZV|1|G5'-D(*AP*GP*GP*CP*CP*TP*TP*GP*TP*TP*GP*GP*CP*CP*A)-3', 5'-D(*TP*GP*GP*CP*CP*AP*AP*CP*AP*AP*GP*GP*CP*CP*T)-3'Crystal structure of tetrameric restriction endonuclease SfiI bound to cognate DNA.X-ray diffraction2.42006-01-24
151T2T|1|B+ 1T2T|1|C5'-D(*AP*AP*TP*TP*AP*AP*AP*GP*GP*GP*CP*AP*GP*TP*CP*CP*TP*AP*CP*AP*A)-3', 5'-D(*TP*TP*TP*GP*TP*AP*GP*GP*AP*CP*TP*GP*CP*CP*CP*TP*TP*TP*AP*AP*T)-3'Crystal structure of the DNA-binding domain of intron endonuclease I-TevI with operator siteX-ray diffraction2.52004-09-07
163HZI|1|T5'-D(*DAP*DCP*DTP*DAP*DTP*DCP*DCP*DCP*DCP*DTP*DTP*DAP*DAP*DGP*DGP*DGP*DGP*DAP*DTP*DAP*DG)-3'Structure of mdt proteinX-ray diffraction2.982009-07-28
173DNV|1|TDNA (5'-D(*DAP*DCP*DTP*DAP*DTP*DCP*DCP*DCP*DCP*DTP*DTP*DAP*DAP*DGP*DGP*DGP*DGP*DAP*DTP*DAP*DG)-3')MDT ProteinX-ray diffraction2.682009-01-27
181NWQ|1|B+ 1NWQ|1|D5'-D(*AP*AP*AP*CP*TP*GP*GP*AP*TP*TP*GP*CP*GP*CP*AP*AP*TP*AP*GP*GP*A)-3', 5'-D(*TP*TP*CP*CP*TP*AP*TP*TP*GP*CP*GP*CP*AP*AP*TP*CP*CP*AP*GP*TP*T)-3'CRYSTAL STRUCTURE OF C/EBPALPHA-DNA COMPLEXX-ray diffraction2.82003-05-13
192AS5|1|A+ 2AS5|1|B5'-D(AP*AP*CP*TP*AP*TP*GP*AP*AP*AP*CP*AP*AP*AP*TP*TP*TP*TP*CP*CP*TP*)-3', 5'-D(TP*TP*AP*GP*GP*AP*AP*AP*AP*TP*TP*TP*GP*TP*TP*TP*CP*AP*TP*AP*GP*)-3'Structure of the DNA binding domains of NFAT and FOXP2 bound specifically to DNA.X-ray diffraction2.72006-08-08
202AS5|1|C+ 2AS5|1|D5'-D(AP*AP*CP*TP*AP*TP*GP*AP*AP*AP*CP*AP*AP*AP*TP*TP*TP*TP*CP*CP*TP*)-3', 5'-D(TP*TP*AP*GP*GP*AP*AP*AP*AP*TP*TP*TP*GP*TP*TP*TP*CP*AP*TP*AP*GP*)-3'Structure of the DNA binding domains of NFAT and FOXP2 bound specifically to DNA.X-ray diffraction2.72006-08-08
211ZRE|1|X+ 1ZRE|1|Z+ 1ZRE|1|W+ 1ZRE|1|Y5'-D(*AP*TP*TP*TP*CP*GP*AP*AP*AP*AP*AP*TP*GP*GP*GP*AP*T)-3', 5'-D(*CP*TP*AP*GP*AP*TP*CP*CP*CP*AP*TP*TP*TP*TP*TP*CP*GP*AP*AP*AP*T)-3'4 crystal structures of CAP-DNA with all base-pair substitutions at position 6, CAP-[6G;17C]ICAP38 DNAX-ray diffraction2.82006-03-21
223DLH|1|XDNA (5'-D(DTP*DGP*DAP*DGP*DGP*DTP*DAP*DGP*DTP*DAP*DGP*DGP*DTP*DTP*DGP*DTP*DAP*DTP*DAP*DGP*DT)-3')Crystal structure of the guide-strand-containing Argonaute protein silencing complexX-ray diffraction32008-09-02
231ZRC|1|X+ 1ZRC|1|Z+ 1ZRC|1|W+ 1ZRC|1|Y5'-D(*AP*TP*TP*TP*CP*GP*AP*AP*AP*AP*AP*TP*GP*TP*GP*AP*T)-3', 5'-D(*CP*TP*AP*GP*AP*TP*CP*AP*CP*AP*TP*TP*TP*TP*TP*CP*GP*AP*AP*AP*T)-3'4 Crystal structures of CAP-DNA with all base-pair substitutions at position 6, CAP-ICAP38 DNAX-ray diffraction2.82006-03-21
242OYQ|1|E+ 2OYQ|1|FPrimer DNA, Template DNACrystal structure of RB69 gp43 in complex with DNA with 5-NIMP opposite an abasic site analogX-ray diffraction2.862007-10-23
252OYQ|1|G+ 2OYQ|1|HPrimer DNA, Template DNACrystal structure of RB69 gp43 in complex with DNA with 5-NIMP opposite an abasic site analogX-ray diffraction2.862007-10-23
262OYQ|1|I+ 2OYQ|1|JPrimer DNA, Template DNACrystal structure of RB69 gp43 in complex with DNA with 5-NIMP opposite an abasic site analogX-ray diffraction2.862007-10-23
272OYQ|1|K+ 2OYQ|1|LPrimer DNA, Template DNACrystal structure of RB69 gp43 in complex with DNA with 5-NIMP opposite an abasic site analogX-ray diffraction2.862007-10-23
282P5G|1|E+ 2P5G|1|FPrimer DNA, Template DNACrystal structure of RB69 gp43 in complex with DNA with dAMP opposite an abasic site analog in a 21mer templateX-ray diffraction2.82007-10-23
292P5G|1|G+ 2P5G|1|HPrimer DNA, Template DNACrystal structure of RB69 gp43 in complex with DNA with dAMP opposite an abasic site analog in a 21mer templateX-ray diffraction2.82007-10-23
302P5G|1|I+ 2P5G|1|JPrimer DNA, Template DNACrystal structure of RB69 gp43 in complex with DNA with dAMP opposite an abasic site analog in a 21mer templateX-ray diffraction2.82007-10-23
312P5G|1|K+ 2P5G|1|LPrimer DNA, Template DNACrystal structure of RB69 gp43 in complex with DNA with dAMP opposite an abasic site analog in a 21mer templateX-ray diffraction2.82007-10-23
321ZRD|1|X+ 1ZRD|1|Z+ 1ZRD|1|W+ 1ZRD|1|Y5'-D(*AP*TP*TP*TP*CP*GP*AP*AP*AP*AP*AP*TP*GP*AP*GP*AP*T)-3', 5'-D(*CP*TP*AP*GP*AP*TP*CP*TP*CP*AP*TP*TP*TP*TP*TP*CP*GP*AP*AP*AP*T)-3'4 crystal structures of CAP-DNA with all base-pair substitutions at position 6, CAP-[6A;17T]ICAP38 DNAX-ray diffraction2.82006-03-21
332DPD|1|D+ 2DPD|1|E5'-D(*CP*TP*AP*TP*GP*AP*AP*CP*AP*TP*AP*AP*TP*GP*TP*TP*CP*AP*TP*AP*G)-3', 5'-D(*CP*TP*AP*TP*GP*AP*AP*CP*AP*TP*TP*AP*TP*GP*TP*TP*CP*AP*TP*AP*G)-3'Crystal structure of the Replication Termination Protein in complex with a pseudosymmetric B-siteX-ray diffraction3.172007-05-15
341C0W|1|E+ 1C0W|1|FDNA (5'-D(P*AP*TP*TP*AP*GP*GP*TP*TP*AP*GP*CP*CP*TP*AP*CP*CP*CP*TP*AP*AP*T)-3'), DNA (5'-D(P*AP*TP*TP*AP*GP*GP*TP*TP*AP*GP*GP*CP*TP*AP*CP*CP*CP*TP*AP*AP*T)-3')CRYSTAL STRUCTURE OF THE COBALT-ACTIVATED DIPHTHERIA TOXIN REPRESSOR-DNA COMPLEX REVEALS A METAL BINDING SH-LIKE DOMAINX-ray diffraction3.22000-07-22
352EFW|1|D+ 2EFW|1|EDNA (5'-D(*DCP*DT*DAP*DTP*DGP*DTP*DAP*DCP*DCP*DAP*DAP*DAP*DTP*DGP*DTP*DTP*DCP*DAP*DGP*DTP*DC)-3'), DNA (5'-D(*DGP*DAP*DCP*DTP*DGP*DAP*DAP*DCP*DAP*DTP*DTP*DTP*DGP*DGP*DTP*DAP*DCP*DAP*DTP*DAP*DG)-3')Crystal structure of the RTP:nRB complex from Bacillus subtilisX-ray diffraction2.52008-02-26
362EFW|1|I+ 2EFW|1|JDNA (5'-D(*DCP*DT*DAP*DTP*DGP*DTP*DAP*DCP*DCP*DAP*DAP*DAP*DTP*DGP*DTP*DTP*DCP*DAP*DGP*DTP*DC)-3'), DNA (5'-D(*DGP*DAP*DCP*DTP*DGP*DAP*DAP*DCP*DAP*DTP*DTP*DTP*DGP*DGP*DTP*DAP*DCP*DAP*DTP*DAP*DG)-3')Crystal structure of the RTP:nRB complex from Bacillus subtilisX-ray diffraction2.52008-02-26
372GM4|1|I5'-D(*CP*AP*GP*TP*GP*TP*CP*CP*GP*AP*TP*AP*AP*TP*TP*TP*AP*TP*AP*AP*A)-3'An activated, tetrameric gamma-delta resolvase: Hin chimaera bound to cleaved DNAX-ray diffraction3.52006-06-27
382GM4|1|J+ 2GM4|1|K5'-D(*CP*AP*GP*TP*GP*TP*CP*CP*GP*AP*TP*AP*AP*TP*TP*TP*AP*TP*AP*AP*A)-3', 5'-D(*TP*TP*AP*TP*CP*GP*GP*AP*CP*AP*CP*TP*G)-3'An activated, tetrameric gamma-delta resolvase: Hin chimaera bound to cleaved DNAX-ray diffraction3.52006-06-27
392GM4|1|X+ 2GM4|1|Y5'-D(*CP*AP*GP*TP*GP*TP*CP*CP*GP*AP*TP*AP*AP*TP*TP*TP*AP*TP*AP*AP*A)-3', 5'-D(*TP*TP*AP*TP*CP*GP*GP*AP*CP*AP*CP*TP*G)-3'An activated, tetrameric gamma-delta resolvase: Hin chimaera bound to cleaved DNAX-ray diffraction3.52006-06-27
402GM4|1|Z5'-D(*CP*AP*GP*TP*GP*TP*CP*CP*GP*AP*TP*AP*AP*TP*TP*TP*AP*TP*AP*AP*A)-3'An activated, tetrameric gamma-delta resolvase: Hin chimaera bound to cleaved DNAX-ray diffraction3.52006-06-27
412HDD|1|C+ 2HDD|1|DDNA (5'-D(*AP*TP*CP*CP*GP*GP*GP*GP*AP*TP*TP*AP*CP*AP*TP*GP*G P*CP*AP*AP*A)-3'), DNA (5'-D(*TP*TP*TP*TP*GP*CP*CP*AP*TP*GP*TP*AP*AP*TP*CP*CP*C P*CP*GP*GP*A)-3')ENGRAILED HOMEODOMAIN Q50K VARIANT DNA COMPLEXX-ray diffraction1.91998-05-27
421CYQ|1|C+ 1CYQ|1|D5'-D(*TP*TP*GP*AP*CP*TP*CP*TP*CP*TP*TP*AP*AP*GP*AP*GP*AP*GP*TP*CP*A)-3'INTRON ENCODED HOMING ENDONUCLEASE I-PPOI (H98A)/DNA HOMING SITE COMPLEXX-ray diffraction1.931999-11-19
433CBB|1|C+ 3CBB|1|DHepatocyte Nuclear Factor 4-alpha promoter element DNACrystal Structure of Hepatocyte Nuclear Factor 4alpha in complex with DNA: Diabetes Gene ProductX-ray diffraction22008-10-07
441DU0|1|C+ 1DU0|1|DDNA (5'-D(*AP*TP*TP*AP*GP*GP*TP*AP*AP*TP*TP*AP*CP*AP*TP*GP*GP*CP*AP*AP*A)-3'), DNA (5'-D(*TP*TP*TP*TP*GP*CP*CP*AP*TP*GP*TP*AP*AP*TP*TP*AP*CP*CP*TP*AP*A)-3')ENGRAILED HOMEODOMAIN Q50A VARIANT DNA COMPLEXX-ray diffraction22000-07-31
451CZ0|1|C+ 1CZ0|1|DDNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*TP*CP*TP*TP*AP*AP*GP*AP*GP*AP*GP*TP*CP*A)-3')INTRON ENCODED HOMING ENDONUCLEASE I-PPOI/DNA COMPLEX LACKING CATALYTIC METAL IONX-ray diffraction2.11999-11-19
461I3J|1|B+ 1I3J|1|C5'-D(*AP*AP*TP*TP*AP*AP*AP*CP*GP*GP*TP*AP*GP*AP*CP*CP*CP*AP*AP*GP*A)-3', 5'-D(*TP*TP*CP*TP*TP*GP*GP*GP*TP*CP*TP*AP*CP*CP*GP*TP*TP*TP*AP*AP*T)-3'CRYSTAL STRUCTURE OF THE DNA-BINDING DOMAIN OF INTRON ENDONUCLEASE I-TEVI WITH ITS SUBSTRATEX-ray diffraction2.22001-07-13
473HDD|1|C+ 3HDD|1|D5'-D(*AP*TP*TP*AP*GP*GP*TP*AP*AP*TP*TP*AP*CP*AP*TP*GP*GP*CP*AP*AP*A)-3', 5'-D(*TP*TP*TP*TP*GP*CP*CP*AP*TP*GP*TP*AP*AP*TP*TP*AP*CP*CP*TP*AP*A)-3'ENGRAILED HOMEODOMAIN DNA COMPLEXX-ray diffraction2.21998-11-11
481A74|1|C+ 1A74|1|DDNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*TP*CP*TP*TP*AP*AP*GP*AP*GP*A P*GP*TP*CP*A)-3')I-PPOL HOMING ENDONUCLEASE/DNA COMPLEXX-ray diffraction2.21998-06-22
491IPP|1|C+ 1IPP|1|DDNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*TP*CP*TP*TP*AP*AP*GP*AP*GP*AP*GP*TP*CP*A)-3')HOMING ENDONUCLEASE/DNA COMPLEXX-ray diffraction2.21998-09-02
501TUP|1|E+ 1TUP|1|FDNA (5'-D(*AP*TP*AP*AP*TP*TP*GP*GP*GP*CP*AP*AP*GP*TP*CP*TP*A P*GP*GP*AP*A)-3'), DNA (5'-D(*TP*TP*TP*CP*CP*TP*AP*GP*AP*CP*TP*TP*GP*CP*CP*CP*A P*AP*TP*TP*A)-3')TUMOR SUPPRESSOR P53 COMPLEXED WITH DNAX-ray diffraction2.21995-07-11
511TSR|1|E+ 1TSR|1|FDNA (5'-D(*AP*TP*AP*AP*TP*TP*GP*GP*GP*CP*AP*AP*GP*TP*CP*TP*A P*GP*GP*AP*A)-3'), DNA (5'-D(*TP*TP*TP*CP*CP*TP*AP*GP*AP*CP*TP*TP*GP*CP*CP*CP*A P*AP*TP*TP*A)-3')P53 CORE DOMAIN IN COMPLEX WITH DNAX-ray diffraction2.21996-01-29
521AM9|1|F+ 1AM9|1|H+ 1AM9|1|E+ 1AM9|1|GDNA (5'-D(*CP*AP*TP*GP*AP*GP*AP*TP*CP*AP*CP*CP*CP*CP*AP*CP*T P*GP*CP*AP*A)-3'), DNA (5'-D(*TP*TP*GP*CP*AP*GP*TP*GP*GP*GP*GP*TP*GP*AP*TP*CP*T )-3')HUMAN SREBP-1A BOUND TO LDL RECEPTOR PROMOTERX-ray diffraction2.31998-07-10
531HLV|1|B+ 1HLV|1|CCENP-B BOX DNACRYSTAL STRUCTURE OF CENP-B(1-129) COMPLEXED WITH THE CENP-B BOX DNAX-ray diffraction2.52002-01-11
541AKH|1|C+ 1AKH|1|DDNA (5'-D(*TP*AP*CP*AP*TP*GP*TP*AP*AP*AP*AP*AP*TP*TP*TP*AP*C P*AP*TP*CP*A)-3'), DNA (5'-D(*TP*AP*TP*GP*AP*TP*GP*TP*AP*AP*AP*TP*TP*TP*TP*TP*A P*CP*AP*TP*G)-3')MAT A1/ALPHA2/DNA TERNARY COMPLEXX-ray diffraction2.51998-05-20
551YRN|1|C+ 1YRN|1|DDNA (5'-D(*TP*AP*CP*AP*TP*GP*TP*AP*AP*TP*TP*TP*AP*TP*TP*AP*C P*AP*TP*CP*A)-3'), DNA (5'-D(*TP*AP*TP*GP*AP*TP*GP*TP*AP*AP*TP*AP*AP*AP*TP*TP*A P*CP*AP*TP*G)-3')CRYSTAL STRUCTURE OF THE MATA1/MATALPHA2 HOMEODOMAIN HETERODIMER BOUND TO DNAX-ray diffraction2.51996-01-29
561F4K|1|D+ 1F4K|1|E5'-D(*CP*TP*AP*TP*GP*AP*AP*CP*AP*TP*AP*AP*TP*GP*TP*TP*CP*AP*TP*AP*G)-3', 5'-D(*CP*TP*AP*TP*GP*AP*AP*CP*AP*TP*TP*AP*TP*GP*TP*TP*CP*AP*TP*AP*G)-3'CRYSTAL STRUCTURE OF THE REPLICATION TERMINATOR PROTEIN/B-SITE DNA COMPLEXX-ray diffraction2.52001-06-08
572GLI|1|C+ 2GLI|1|DDNA (5'-D(*AP*CP*GP*TP*GP*GP*AP*CP*CP*AP*CP*CP*CP*AP*AP*GP*AP*CP*GP*AP*A)-3'), DNA (5'-D(*TP*TP*TP*CP*GP*TP*CP*TP*TP*GP*GP*GP*TP*GP*GP*TP*CP*CP*AP*CP*G)-3')FIVE-FINGER GLI/DNA COMPLEXX-ray diffraction2.61993-11-09
581EFA|1|D+ 1EFA|1|EDNA (5'-D(*GP*AP*AP*T*TP*GP*TP*GP*AP*GP*CP*GP*CP*TP*CP*AP*CP*AP*AP*TP*T)-3')CRYSTAL STRUCTURE OF THE LAC REPRESSOR DIMER BOUND TO OPERATOR AND THE ANTI-INDUCER ONPFX-ray diffraction2.62000-03-06
591IC8|1|E+ 1IC8|1|F5'-D(*CP*TP*TP*GP*GP*TP*TP*AP*AP*TP*AP*AP*TP*TP*CP*AP*CP*CP*AP*GP*A)-3', 5'-D(*TP*CP*TP*GP*GP*TP*GP*AP*AP*TP*TP*AP*TP*TP*AP*AP*CP*CP*AP*AP*G)-3'HEPATOCYTE NUCLEAR FACTOR 1A BOUND TO DNA : MODY3 GENE PRODUCTX-ray diffraction2.62002-11-27
601APL|1|A+ 1APL|1|BDNA (5'-D(*AP*CP*AP*TP*GP*TP*AP*AP*TP*TP*CP*AP*TP*TP*TP*AP*C P*AP*CP*GP*C)-3'), DNA (5'-D(*TP*GP*CP*GP*TP*GP*TP*AP*AP*AP*TP*GP*AP*AP*TP*TP*A P*CP*AP*TP*G)-3')CRYSTAL STRUCTURE OF A MAT-ALPHA2 HOMEODOMAIN-OPERATOR COMPLEX SUGGESTS A GENERAL MODEL FOR HOMEODOMAIN-DNA INTERACTIONSX-ray diffraction2.71993-10-21
611D5Y|1|M+ 1D5Y|1|NDNA (5'-D(*AP*CP*TP*TP*TP*GP*AP*CP*AP*TP*TP*CP*AP*GP*TP*GP*CP*TP*GP*TP*C)-3'), DNA (5'-D(*TP*GP*AP*CP*AP*GP*CP*AP*CP*TP*GP*AP*AP*TP*GP*TP*CP*AP*AP*AP*G)-3')CRYSTAL STRUCTURE OF THE E. COLI ROB TRANSCRIPTION FACTOR IN COMPLEX WITH DNAX-ray diffraction2.72000-04-24
621D5Y|1|O+ 1D5Y|1|PDNA (5'-D(*AP*CP*TP*TP*TP*GP*AP*CP*AP*TP*TP*CP*AP*GP*TP*GP*CP*TP*GP*TP*C)-3'), DNA (5'-D(*TP*GP*AP*CP*AP*GP*CP*AP*CP*TP*GP*AP*AP*TP*GP*TP*CP*AP*AP*AP*G)-3')CRYSTAL STRUCTURE OF THE E. COLI ROB TRANSCRIPTION FACTOR IN COMPLEX WITH DNAX-ray diffraction2.72000-04-24
631HDD|1|A+ 1HDD|1|BDNA (5'-D(*AP*TP*TP*AP*GP*GP*TP*AP*AP*TP*TP*AP*CP*AP*TP*GP*G P*CP*AP*AP*A)-3'), DNA (5'-D(*TP*TP*TP*TP*GP*CP*CP*AP*TP*GP*TP*AP*AP*TP*TP*AP*C P*CP*TP*AP*A)-3')synthetic constructCRYSTAL STRUCTURE OF AN ENGRAILED HOMEODOMAIN-DNA COMPLEX AT 2.8 ANGSTROMS RESOLUTION: A FRAMEWORK FOR UNDERSTANDING HOMEODOMAIN-DNA INTERACTIONSX-ray diffraction2.81992-01-15
641AN4|1|C+ 1AN4|1|DDNA (5'-D(*CP*AP*CP*CP*CP*GP*GP*TP*CP*AP*CP*GP*TP*GP*GP*CP*C P*TP*AP*CP*A)-3'), DNA (5'-D(*GP*TP*GP*TP*AP*GP*GP*CP*CP*AP*CP*GP*TP*GP*AP*CP*C P*GP*GP*GP*T)-3')STRUCTURE AND FUNCTION OF THE B/HLH/Z DOMAIN OF USFX-ray diffraction2.91997-09-17
651DH3|1|B+ 1DH3|1|DDNA (5'-D(*CP*CP*TP*TP*GP*GP*CP*TP*GP*AP*CP*GP*TP*CP*AP*GP*CP*CP*AP*AP*G)-3')CRYSTAL STRUCTURE OF A CREB BZIP-CRE COMPLEX REVEALS THE BASIS FOR CREB FAIMLY SELECTIVE DIMERIZATION AND DNA BINDINGX-ray diffraction32000-11-27
661EXJ|1|MDNA (5'-D(*AP*CP*CP*CP*TP*CP*CP*CP*CP*TP*TP*AP*GP*GP*GP*GP*AP*GP*GP*GP*T)-3')CRYSTAL STRUCTURE OF TRANSCRIPTION ACTIVATOR BMRR, FROM B. SUBTILIS, BOUND TO 21 BASE PAIR BMR OPERATOR AND TPPX-ray diffraction32001-01-24
671KSY|1|D+ 1KSY|1|FE1 Recognition Sequence, Strand 1, E1 Recognition Sequence, Strand 2Crystal Structures of Two Intermediates in the Assembly of the Papillomavirus Replication Initiation ComplexX-ray diffraction3.052002-03-15
682F03|1|E+ 2F03|1|FDNA (5'-D(*AP*AP*TP*AP*GP*GP*CP*CP*TP*TP*GP*TP*TP*GP*GP*CP*CP*AP*CP*AP*T)-3'), DNA (5'-D(*AP*TP*G*TP*GP*GP*CP*CP*AP*AP*CP*AP*AP*GP*GP*CP*CP*TP*AP*TP*T)-3')Crystal structure of tetrameric restriction endonuclease SfiI in complex with cognate DNA (partial bound form)X-ray diffraction3.052007-01-16
691KSY|1|EE1 Recognition Sequence, Strand 1Crystal Structures of Two Intermediates in the Assembly of the Papillomavirus Replication Initiation ComplexX-ray diffraction3.052002-03-15
702F03|1|GDNA (5'-D(*AP*TP*G*TP*GP*GP*CP*CP*AP*AP*CP*AP*AP*GP*GP*CP*CP*TP*AP*TP*T)-3')Crystal structure of tetrameric restriction endonuclease SfiI in complex with cognate DNA (partial bound form)X-ray diffraction3.052007-01-16
712F03|1|HDNA (5'-D(*AP*AP*TP*AP*GP*GP*CP*CP*TP*TP*GP*TP*TP*GP*GP*CP*CP*AP*CP*AP*T)-3')Crystal structure of tetrameric restriction endonuclease SfiI in complex with cognate DNA (partial bound form)X-ray diffraction3.052007-01-16
721EXI|1|MDNA (5'-D(*AP*CP*CP*CP*TP*CP*CP*CP*CP*TP*TP*AP*GP*GP*GP*GP*AP*GP*GP*GP*T)-3')CRYSTAL STRUCTURE OF TRANSCRIPTION ACTIVATOR BMRR, FROM B. SUBTILIS, BOUND TO 21 BASE PAIR BMR OPERATOR AND TPSBX-ray diffraction3.122001-01-24
731KSX|1|C+ 1KSX|1|GE1 Recognition SequenceCrystal Structures of Two Intermediates in the Assembly of the Papillomavirus Replication Initiation ComplexX-ray diffraction3.22002-03-15
741KSX|1|K+ 1KSX|1|OE1 Recognition SequenceCrystal Structures of Two Intermediates in the Assembly of the Papillomavirus Replication Initiation ComplexX-ray diffraction3.22002-03-15

Release history

Release0.10.20.30.40.5
Date2011-02-052011-02-122011-02-162011-02-192011-02-26

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLengthNAKB NA annotationNAKB protein annotation
11TC3|1|A+ 1TC3|1|BTRANSPOSASE TC3A1-65 FROM CAENORHABDITIS ELEGANSX-RAY DIFFRACTION2.4521double helix,structureenzyme,recombinase
23HZI|1|TStructure of mdt proteinX-RAY DIFFRACTION2.9821double helix,structureenzyme,kinase,regulatory,transcription,transferase
33DNV|1|TMDT ProteinX-RAY DIFFRACTION2.6821double helix,structureenzyme,kinase,regulatory,transcription,transferase
42GM4|1|IAn activated, tetrameric gamma-delta resolvase: Hin chimaera bound to cleaved DNAX-RAY DIFFRACTION3.521enzyme,recombinase
51ZRF|1|X+ 1ZRF|1|Z+ 1ZRF|1|W+ 1ZRF|1|Y4 crystal structures of CAP-DNA with all base-pair substitutions at position 6, CAP-[6C;17G]ICAP38 DNAX-RAY DIFFRACTION2.121DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
61ZRC|1|X+ 1ZRC|1|Z+ 1ZRC|1|W+ 1ZRC|1|Y4 Crystal structures of CAP-DNA with all base-pair substitutions at position 6, CAP-ICAP38 DNAX-RAY DIFFRACTION2.821B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
71ZRE|1|X+ 1ZRE|1|Z+ 1ZRE|1|W+ 1ZRE|1|Y4 crystal structures of CAP-DNA with all base-pair substitutions at position 6, CAP-[6G;17C]ICAP38 DNAX-RAY DIFFRACTION2.821B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
81ZRD|1|X+ 1ZRD|1|Z+ 1ZRD|1|W+ 1ZRD|1|Y4 crystal structures of CAP-DNA with all base-pair substitutions at position 6, CAP-[6A;17T]ICAP38 DNAX-RAY DIFFRACTION2.821B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
91YRN|1|C+ 1YRN|1|DCRYSTAL STRUCTURE OF THE MATA1/MATALPHA2 HOMEODOMAIN HETERODIMER BOUND TO DNAX-RAY DIFFRACTION2.521B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription
101AKH|1|C+ 1AKH|1|DMAT A1/ALPHA2/DNA TERNARY COMPLEXX-RAY DIFFRACTION2.521B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription
111HLV|1|B+ 1HLV|1|CCRYSTAL STRUCTURE OF CENP-B(1-129) COMPLEXED WITH THE CENP-B BOX DNAX-RAY DIFFRACTION2.521B-form double helix,double helix,structurecentromere,chromatin,structural
123CBB|1|C+ 3CBB|1|DCrystal Structure of Hepatocyte Nuclear Factor 4alpha in complex with DNA: Diabetes Gene ProductX-RAY DIFFRACTION221B-form double helix,double helix,structureDNA-binding transcription factor (TF),Zinc-coordinating,nuclear receptor ZnC4,regulatory,transcription
133KZ8|1|CDiversity in DNA recognition by p53 revealed by crystal structures with Hoogsteen base pairs (p53-DNA complex 3)X-RAY DIFFRACTION1.9121DNA-binding transcription factor (TF),P53 like,immunoglobulin (Ig) fold,regulatory,transcription
141HDD|1|A+ 1HDD|1|BCRYSTAL STRUCTURE OF AN ENGRAILED HOMEODOMAIN-DNA COMPLEX AT 2.8 ANGSTROMS RESOLUTION: A FRAMEWORK FOR UNDERSTANDING HOMEODOMAIN-DNA INTERACTIONSX-RAY DIFFRACTION2.821B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription
153HDD|1|C+ 3HDD|1|DENGRAILED HOMEODOMAIN DNA COMPLEXX-RAY DIFFRACTION2.221B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription
162HOS|1|C+ 2HOS|1|DPhage-Selected Homeodomain Bound to Unmodified DNAX-RAY DIFFRACTION1.921B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription
172HOT|1|C+ 2HOT|1|DPhage selected homeodomain bound to modified DNAX-RAY DIFFRACTION2.1921B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription
182HDD|1|C+ 2HDD|1|DENGRAILED HOMEODOMAIN Q50K VARIANT DNA COMPLEXX-RAY DIFFRACTION1.921B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription
191DU0|1|C+ 1DU0|1|DENGRAILED HOMEODOMAIN Q50A VARIANT DNA COMPLEXX-RAY DIFFRACTION221B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription
202A07|1|A+ 2A07|1|BCrystal Structure of Foxp2 bound Specifically to DNA.X-RAY DIFFRACTION1.921DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
212A07|1|C+ 2A07|1|DCrystal Structure of Foxp2 bound Specifically to DNA.X-RAY DIFFRACTION1.921DNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
222F03|1|E+ 2F03|1|FCrystal structure of tetrameric restriction endonuclease SfiI in complex with cognate DNA (partial bound form)X-RAY DIFFRACTION3.0521enzyme,hydrolase,nuclease
232F03|1|GCrystal structure of tetrameric restriction endonuclease SfiI in complex with cognate DNA (partial bound form)X-RAY DIFFRACTION3.0521enzyme,hydrolase,nuclease
242AS5|1|A+ 2AS5|1|BStructure of the DNA binding domains of NFAT and FOXP2 bound specifically to DNA.X-RAY DIFFRACTION2.721B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),immunoglobulin (Ig) fold,regulatory,rel homology,transcription,winged helix/forkhead
252AS5|1|C+ 2AS5|1|DStructure of the DNA binding domains of NFAT and FOXP2 bound specifically to DNA.X-RAY DIFFRACTION2.721B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),immunoglobulin (Ig) fold,regulatory,rel homology,transcription,winged helix/forkhead
262EZV|1|F+ 2EZV|1|GCrystal structure of tetrameric restriction endonuclease SfiI bound to cognate DNA.X-RAY DIFFRACTION2.421enzyme,hydrolase,nuclease
271DH3|1|B+ 1DH3|1|DCRYSTAL STRUCTURE OF A CREB BZIP-CRE COMPLEX REVEALS THE BASIS FOR CREB FAIMLY SELECTIVE DIMERIZATION AND DNA BINDINGX-RAY DIFFRACTION321B-form double helix,double helix,structureDNA-binding transcription factor (TF),basic transcription factor,leucine zipper (bZIP),regulatory,transcription
281T2T|1|B+ 1T2T|1|CCrystal structure of the DNA-binding domain of intron endonuclease I-TevI with operator siteX-RAY DIFFRACTION2.521B-form double helix,double helix,structureenzyme,hydrolase,nuclease
291I3J|1|B+ 1I3J|1|CCRYSTAL STRUCTURE OF THE DNA-BINDING DOMAIN OF INTRON ENDONUCLEASE I-TEVI WITH ITS SUBSTRATEX-RAY DIFFRACTION2.221B-form double helix,double helix,structureenzyme,hydrolase,nuclease
301AM9|1|F+ 1AM9|1|H+ 1AM9|1|E+ 1AM9|1|GHUMAN SREBP-1A BOUND TO LDL RECEPTOR PROMOTERX-RAY DIFFRACTION2.321B-form double helix,double helix,structureDNA-binding transcription factor (TF),basic transcription factor,helix-loop-helix (bHLH),regulatory,transcription
312RBF|1|C+ 2RBF|1|DStructure of the ribbon-helix-helix domain of Escherichia coli PutA (PutA52) complexed with operator DNA (O2)X-RAY DIFFRACTION2.2521B-form double helix,double helix,structureenzyme,oxidoreductase,regulatory,transcription
323G73|1|C+ 3G73|1|DStructure of the FOXM1 DNA bindingX-RAY DIFFRACTION2.2121B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
331AWC|1|D+ 1AWC|1|EMOUSE GABP ALPHA/BETA DOMAIN BOUND TO DNAX-RAY DIFFRACTION2.1521B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
341C0W|1|E+ 1C0W|1|FCRYSTAL STRUCTURE OF THE COBALT-ACTIVATED DIPHTHERIA TOXIN REPRESSOR-DNA COMPLEX REVEALS A METAL BINDING SH-LIKE DOMAINX-RAY DIFFRACTION3.221double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
352NTC|1|C+ 2NTC|1|WCrystal Structure of sv40 large T antigen origin binding domain with DNAX-RAY DIFFRACTION2.421B-form double helix,double helix,structureDNA replication/repair,enzyme,helicase,hydrolase,regulatory
361NWQ|1|B+ 1NWQ|1|DCRYSTAL STRUCTURE OF C/EBPALPHA-DNA COMPLEXX-RAY DIFFRACTION2.821B-form double helix,double helix,structureDNA-binding transcription factor (TF),basic transcription factor,leucine zipper (bZIP),regulatory,transcription
371D5Y|1|M+ 1D5Y|1|NCRYSTAL STRUCTURE OF THE E. COLI ROB TRANSCRIPTION FACTOR IN COMPLEX WITH DNAX-RAY DIFFRACTION2.721B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription
381D5Y|1|O+ 1D5Y|1|PCRYSTAL STRUCTURE OF THE E. COLI ROB TRANSCRIPTION FACTOR IN COMPLEX WITH DNAX-RAY DIFFRACTION2.721B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription
391KSY|1|D+ 1KSY|1|FCrystal Structures of Two Intermediates in the Assembly of the Papillomavirus Replication Initiation ComplexX-RAY DIFFRACTION3.0521B-form double helix,double helix,structureDNA replication/repair,enzyme,helicase,hydrolase,regulatory
401KSY|1|ECrystal Structures of Two Intermediates in the Assembly of the Papillomavirus Replication Initiation ComplexX-RAY DIFFRACTION3.0521B-form double helix,double helix,structureDNA replication/repair,enzyme,helicase,hydrolase,regulatory
411APL|1|A+ 1APL|1|BCRYSTAL STRUCTURE OF A MAT-ALPHA2 HOMEODOMAIN-OPERATOR COMPLEX SUGGESTS A GENERAL MODEL FOR HOMEODOMAIN-DNA INTERACTIONSX-RAY DIFFRACTION2.721B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription
422DPD|1|D+ 2DPD|1|ECrystal structure of the Replication Termination Protein in complex with a pseudosymmetric B-siteX-RAY DIFFRACTION3.1721B-form double helix,double helix,structureDNA replication/repair,regulatory
432GM4|1|J+ 2GM4|1|KAn activated, tetrameric gamma-delta resolvase: Hin chimaera bound to cleaved DNAX-RAY DIFFRACTION3.521enzyme,recombinase
442GM4|1|X+ 2GM4|1|YAn activated, tetrameric gamma-delta resolvase: Hin chimaera bound to cleaved DNAX-RAY DIFFRACTION3.521enzyme,recombinase
451K61|1|E+ 1K61|1|FMATALPHA2 HOMEODOMAIN BOUND TO DNAX-RAY DIFFRACTION2.121B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription
461IC8|1|E+ 1IC8|1|FHEPATOCYTE NUCLEAR FACTOR 1A BOUND TO DNA : MODY3 GENE PRODUCTX-RAY DIFFRACTION2.621B-form double helix,double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),homeodomain,regulatory,transcription
471F4K|1|D+ 1F4K|1|ECRYSTAL STRUCTURE OF THE REPLICATION TERMINATOR PROTEIN/B-SITE DNA COMPLEXX-RAY DIFFRACTION2.521B-form double helix,double helix,structureDNA replication/repair,regulatory
481AN4|1|C+ 1AN4|1|DSTRUCTURE AND FUNCTION OF THE B/HLH/Z DOMAIN OF USFX-RAY DIFFRACTION2.921double helix,structureDNA-binding transcription factor (TF),basic transcription factor,helix-loop-helix (bHLH),regulatory,transcription
491KSX|1|K+ 1KSX|1|OCrystal Structures of Two Intermediates in the Assembly of the Papillomavirus Replication Initiation ComplexX-RAY DIFFRACTION3.221DNA replication/repair,enzyme,helicase,hydrolase,regulatory
501KSX|1|C+ 1KSX|1|GCrystal Structures of Two Intermediates in the Assembly of the Papillomavirus Replication Initiation ComplexX-RAY DIFFRACTION3.221DNA replication/repair,enzyme,helicase,hydrolase,regulatory
512EFW|1|I+ 2EFW|1|JCrystal structure of the RTP:nRB complex from Bacillus subtilisX-RAY DIFFRACTION2.521double helix,structureDNA replication/repair,regulatory
522EFW|1|D+ 2EFW|1|ECrystal structure of the RTP:nRB complex from Bacillus subtilisX-RAY DIFFRACTION2.521double helix,structureDNA replication/repair,regulatory
531TSR|1|E+ 1TSR|1|FP53 CORE DOMAIN IN COMPLEX WITH DNAX-RAY DIFFRACTION2.221B-form double helix,double helix,structureDNA-binding transcription factor (TF),P53 like,immunoglobulin (Ig) fold,regulatory,transcription
541TUP|1|E+ 1TUP|1|FTUMOR SUPPRESSOR P53 COMPLEXED WITH DNAX-RAY DIFFRACTION2.221B-form double helix,double helix,structureDNA-binding transcription factor (TF),P53 like,immunoglobulin (Ig) fold,regulatory,transcription
552F03|1|HCrystal structure of tetrameric restriction endonuclease SfiI in complex with cognate DNA (partial bound form)X-RAY DIFFRACTION3.0521enzyme,hydrolase,nuclease
562P5G|1|E+ 2P5G|1|FCrystal structure of RB69 gp43 in complex with DNA with dAMP opposite an abasic site analog in a 21mer templateX-RAY DIFFRACTION2.821B-form double helix,double helix,structureenzyme,polymerase,transferase
572OYQ|1|E+ 2OYQ|1|FCrystal structure of RB69 gp43 in complex with DNA with 5-NIMP opposite an abasic site analogX-RAY DIFFRACTION2.8621double helix,structureenzyme,polymerase,transferase
582P5G|1|I+ 2P5G|1|JCrystal structure of RB69 gp43 in complex with DNA with dAMP opposite an abasic site analog in a 21mer templateX-RAY DIFFRACTION2.821B-form double helix,double helix,structureenzyme,polymerase,transferase
592OYQ|1|I+ 2OYQ|1|JCrystal structure of RB69 gp43 in complex with DNA with 5-NIMP opposite an abasic site analogX-RAY DIFFRACTION2.8621double helix,structureenzyme,polymerase,transferase
602OYQ|1|K+ 2OYQ|1|LCrystal structure of RB69 gp43 in complex with DNA with 5-NIMP opposite an abasic site analogX-RAY DIFFRACTION2.8621double helix,structureenzyme,polymerase,transferase
612P5G|1|K+ 2P5G|1|LCrystal structure of RB69 gp43 in complex with DNA with dAMP opposite an abasic site analog in a 21mer templateX-RAY DIFFRACTION2.821B-form double helix,double helix,structureenzyme,polymerase,transferase
622P5G|1|G+ 2P5G|1|HCrystal structure of RB69 gp43 in complex with DNA with dAMP opposite an abasic site analog in a 21mer templateX-RAY DIFFRACTION2.821B-form double helix,double helix,structureenzyme,polymerase,transferase
632OYQ|1|G+ 2OYQ|1|HCrystal structure of RB69 gp43 in complex with DNA with 5-NIMP opposite an abasic site analogX-RAY DIFFRACTION2.8621double helix,structureenzyme,polymerase,transferase
642O6M|1|C+ 2O6M|1|DH98Q mutant of the homing endonuclease I-PPOI complexed with DNAX-RAY DIFFRACTION2.321double helix,structureenzyme,hydrolase,nuclease
651CYQ|1|C+ 1CYQ|1|DINTRON ENCODED HOMING ENDONUCLEASE I-PPOI (H98A)/DNA HOMING SITE COMPLEXX-RAY DIFFRACTION1.9321double helix,structureenzyme,hydrolase,nuclease
661CZ0|1|C+ 1CZ0|1|DINTRON ENCODED HOMING ENDONUCLEASE I-PPOI/DNA COMPLEX LACKING CATALYTIC METAL IONX-RAY DIFFRACTION2.121double helix,structureenzyme,hydrolase,nuclease
671A74|1|C+ 1A74|1|DI-PPOL HOMING ENDONUCLEASE/DNA COMPLEXX-RAY DIFFRACTION2.221double helix,structureenzyme,hydrolase,nuclease
681IPP|1|C+ 1IPP|1|DHOMING ENDONUCLEASE/DNA COMPLEXX-RAY DIFFRACTION2.221double helix,structureenzyme,hydrolase,nuclease
691EXJ|1|MCRYSTAL STRUCTURE OF TRANSCRIPTION ACTIVATOR BMRR, FROM B. SUBTILIS, BOUND TO 21 BASE PAIR BMR OPERATOR AND TPPX-RAY DIFFRACTION321double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
701EXI|1|MCRYSTAL STRUCTURE OF TRANSCRIPTION ACTIVATOR BMRR, FROM B. SUBTILIS, BOUND TO 21 BASE PAIR BMR OPERATOR AND TPSBX-RAY DIFFRACTION3.1221double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),regulatory,transcription,winged helix/forkhead
711EFA|1|D+ 1EFA|1|ECRYSTAL STRUCTURE OF THE LAC REPRESSOR DIMER BOUND TO OPERATOR AND THE ANTI-INDUCER ONPFX-RAY DIFFRACTION2.621double helix,structureDNA-binding transcription factor (TF),helix-turn-helix (HTH),lambda repressor-like,regulatory,transcription
722GLI|1|C+ 2GLI|1|DFIVE-FINGER GLI/DNA COMPLEXX-RAY DIFFRACTION2.621double helix,structureDNA-binding transcription factor (TF),Zinc finger C2H2,Zinc-coordinating,regulatory,transcription
732GM4|1|ZAn activated, tetrameric gamma-delta resolvase: Hin chimaera bound to cleaved DNAX-RAY DIFFRACTION3.521enzyme,recombinase
743DLH|1|XCrystal structure of the guide-strand-containing Argonaute protein silencing complexX-RAY DIFFRACTION321enzyme,gene silencing,hydrolase,nuclease,regulatory

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


Coloring options:

Copyright 2024 BGSU RNA group. Page generated in 0.0127 s