Equivalence class DNA_4.0_95425.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 1QNA|1|C+ 1QNA|1|D (rep) | DNA (5'-D(*GP*CP*TP*TP*TP*AP*AP*AP*AP*GP*GP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*CP*CP*TP*TP*TP*TP*AP*AP*AP*GP*C)-3') | Crystal structure of the T(-30) Adenovirus major late promoter TATA box variant bound to wild-type TBP (Arabidopsis thaliana TBP isoform 2). TATA element recognition by the TATA box-binding protein has been conserved throughout evolution. | X-ray diffraction | 1.8 | 2000-02-07 | ||||
| 2 | 1QNA|1|E+ 1QNA|1|F | DNA (5'-D(*GP*CP*TP*TP*TP*AP*AP*AP*AP*GP*GP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*CP*CP*TP*TP*TP*TP*AP*AP*AP*GP*C)-3') | Crystal structure of the T(-30) Adenovirus major late promoter TATA box variant bound to wild-type TBP (Arabidopsis thaliana TBP isoform 2). TATA element recognition by the TATA box-binding protein has been conserved throughout evolution. | X-ray diffraction | 1.8 | 2000-02-07 | ||||
| 3 | 1QN4|1|C+ 1QN4|1|D | DNA (5'-D(*GP*CP*TP*AP*TP*AP*AP*AP*AP*TP*GP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*CP*AP*TP*TP*TP*TP*AP*TP*AP*GP*C)-3') | Crystal structure of the T(-24) Adenovirus major late promoter TATA box variant bound to wild-type TBP (Arabidopsis thaliana TBP isoform 2). TATA element recognition by the TATA box-binding protein has been conserved throughout evolution. | X-ray diffraction | 1.86 | 2000-02-06 | ||||
| 4 | 1QN4|1|E+ 1QN4|1|F | DNA (5'-D(*GP*CP*TP*AP*TP*AP*AP*AP*AP*TP*GP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*CP*AP*TP*TP*TP*TP*AP*TP*AP*GP*C)-3') | Crystal structure of the T(-24) Adenovirus major late promoter TATA box variant bound to wild-type TBP (Arabidopsis thaliana TBP isoform 2). TATA element recognition by the TATA box-binding protein has been conserved throughout evolution. | X-ray diffraction | 1.86 | 2000-02-06 | ||||
| 5 | 1QN9|1|C+ 1QN9|1|D | DNA (5'-D(*GP*CP*TP*AP*CP*AP*AP*AP*AP*GP*GP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*CP*CP*TP*TP*TP*TP*GP*TP*AP*GP*C)-3') | Crystal structure of the C(-29) Adenovirus major late promoter TATA box variant bound to wild-type TBP (Arabidopsis thaliana TBP isoform 2). TATA element recognition by the TATA box-binding protein has been conserved throughout evolution. | X-ray diffraction | 1.9 | 2000-02-07 | ||||
| 6 | 1QNE|1|C+ 1QNE|1|D | DNA (5'-D(*GP*CP*TP*AP*TP*AP*AP*AP*AP*GP*GP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*CP*CP*TP*TP*TP*TP*AP*TP*AP*GP*C)-3') | Crystal structure of the Adenovirus major late promoter TATA box bound to wild-type TBP (Arabidopsis thaliana TBP isoform 2). | X-ray diffraction | 1.9 | 2000-02-07 | ||||
| 7 | 1QN9|1|E+ 1QN9|1|F | DNA (5'-D(*GP*CP*TP*AP*CP*AP*AP*AP*AP*GP*GP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*CP*CP*TP*TP*TP*TP*GP*TP*AP*GP*C)-3') | Crystal structure of the C(-29) Adenovirus major late promoter TATA box variant bound to wild-type TBP (Arabidopsis thaliana TBP isoform 2). TATA element recognition by the TATA box-binding protein has been conserved throughout evolution. | X-ray diffraction | 1.9 | 2000-02-07 | ||||
| 8 | 1QNE|1|E+ 1QNE|1|F | DNA (5'-D(*GP*CP*TP*AP*TP*AP*AP*AP*AP*GP*GP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*CP*CP*TP*TP*TP*TP*AP*TP*AP*GP*C)-3') | Crystal structure of the Adenovirus major late promoter TATA box bound to wild-type TBP (Arabidopsis thaliana TBP isoform 2). | X-ray diffraction | 1.9 | 2000-02-07 | ||||
| 9 | 1QN5|1|C+ 1QN5|1|D | DNA (5'-D(*GP*CP*TP*AP*TP*AP*AP*GP*AP*GP*GP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*CP*CP*TP*CP*TP*TP*AP*TP*AP*GP*C)-3') | Crystal structure of the G(-26) Adenovirus major late promoter TATA box variant bound to wild-type TBP (Arabidopsis thaliana TBP isoform 2). TATA element recognition by the TATA box-binding protein has been conserved throughout evolution. | X-ray diffraction | 1.93 | 2000-02-07 | ||||
| 10 | 1QN5|1|E+ 1QN5|1|F | DNA (5'-D(*GP*CP*TP*AP*TP*AP*AP*GP*AP*GP*GP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*CP*CP*TP*CP*TP*TP*AP*TP*AP*GP*C)-3') | Crystal structure of the G(-26) Adenovirus major late promoter TATA box variant bound to wild-type TBP (Arabidopsis thaliana TBP isoform 2). TATA element recognition by the TATA box-binding protein has been conserved throughout evolution. | X-ray diffraction | 1.93 | 2000-02-07 | ||||
| 11 | 1QN3|1|C+ 1QN3|1|D | DNA (5'-D(*GP*CP*TP*AP*TP*AP*AP*AP*CP*GP*GP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*CP*CP*GP*TP*TP*TP*AP*TP*AP*GP*C)-3') | Crystal structure of the C(-25) Adenovirus major late promoter TATA box variant bound to wild-type TBP (Arabidopsis thaliana TBP isoform 2). TATA element recognition by the TATA box-binding protein has been conserved throughout evolution. | X-ray diffraction | 1.95 | 2000-02-06 | ||||
| 12 | 1QN3|1|E+ 1QN3|1|F | DNA (5'-D(*GP*CP*TP*AP*TP*AP*AP*AP*CP*GP*GP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*CP*CP*GP*TP*TP*TP*AP*TP*AP*GP*C)-3') | Crystal structure of the C(-25) Adenovirus major late promoter TATA box variant bound to wild-type TBP (Arabidopsis thaliana TBP isoform 2). TATA element recognition by the TATA box-binding protein has been conserved throughout evolution. | X-ray diffraction | 1.95 | 2000-02-06 | ||||
| 13 | 1QN6|1|C+ 1QN6|1|D | DNA (5'-D(*GP*CP*TP*AP*TP*AP*AP*TP*AP*GP*GP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*CP*CP*TP*AP*TP*TP*AP*TP*AP*GP*C)-3') | Crystal structure of the T(-26) Adenovirus major late promoter TATA box variant bound to wild-type TBP (Arabidopsis thaliana TBP isoform 2). TATA element recognition by the TATA box-binding protein has been conserved throughout evolution. | X-ray diffraction | 2.1 | 2000-02-07 | ||||
| 14 | 1QN8|1|C+ 1QN8|1|D | DNA (5'-D(*GP*CP*TP*AP*TP*TP*AP*AP*AP*GP*GP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*CP*CP*TP*TP*TP*AP*AP*TP*AP*GP*C)-3') | Crystal structure of the T(-28) Adenovirus major late promoter TATA box variant bound to wild-type TBP (Arabidopsis thaliana TBP isoform 2). TATA element recognition by the TATA box-binding protein has been conserved throughout evolution. | X-ray diffraction | 2.1 | 2000-02-07 | ||||
| 15 | 1QN8|1|E+ 1QN8|1|F | DNA (5'-D(*GP*CP*TP*AP*TP*TP*AP*AP*AP*GP*GP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*CP*CP*TP*TP*TP*AP*AP*TP*AP*GP*C)-3') | Crystal structure of the T(-28) Adenovirus major late promoter TATA box variant bound to wild-type TBP (Arabidopsis thaliana TBP isoform 2). TATA element recognition by the TATA box-binding protein has been conserved throughout evolution. | X-ray diffraction | 2.1 | 2000-02-07 | ||||
| 16 | 1QN6|1|E+ 1QN6|1|F | DNA (5'-D(*GP*CP*TP*AP*TP*AP*AP*TP*AP*GP*GP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*CP*CP*TP*AP*TP*TP*AP*TP*AP*GP*C)-3') | Crystal structure of the T(-26) Adenovirus major late promoter TATA box variant bound to wild-type TBP (Arabidopsis thaliana TBP isoform 2). TATA element recognition by the TATA box-binding protein has been conserved throughout evolution. | X-ray diffraction | 2.1 | 2000-02-07 | ||||
| 17 | 1QNB|1|C+ 1QNB|1|D | DNA (5'-D(*GP*CP*TP*AP*TP*AP*AP*AP*TP*GP*GP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*CP*CP*AP*TP*TP*TP*AP*TP*AP*GP*C)-3') | Crystal structure of the T(-25) Adenovirus major late promoter TATA box variant bound to wild-type TBP (Arabidopsis thaliana TBP isoform 2). TATA element recognition by the TATA box-binding protein has been conserved throughout evolution. | X-ray diffraction | 2.23 | 2000-02-07 | ||||
| 18 | 1QNB|1|E+ 1QNB|1|F | DNA (5'-D(*GP*CP*TP*AP*TP*AP*AP*AP*TP*GP*GP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*CP*CP*AP*TP*TP*TP*AP*TP*AP*GP*C)-3') | Crystal structure of the T(-25) Adenovirus major late promoter TATA box variant bound to wild-type TBP (Arabidopsis thaliana TBP isoform 2). TATA element recognition by the TATA box-binding protein has been conserved throughout evolution. | X-ray diffraction | 2.23 | 2000-02-07 | ||||
| 19 | 1QN7|1|C+ 1QN7|1|D | DNA (5'-D(*GP*CP*TP*AP*TP*AP*TP*AP*AP*GP*GP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*CP*CP*TP*TP*AP*TP*AP*TP*AP*GP*C)-3') | Crystal structure of the T(-27) Adenovirus major late promoter TATA box variant bound to wild-type TBP (Arabidopsis thaliana TBP isoform 2). TATA element recognition by the TATA box-binding protein has been conserved throughout evolution. | X-ray diffraction | 2.3 | 2000-02-07 | ||||
| 20 | 1QNC|1|C+ 1QNC|1|D | DNA (5'-D(*GP*CP*AP*AP*TP*AP*AP*AP*AP*GP*GP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*CP*CP*TP*TP*TP*TP*AP*TP*TP*GP*C)-3') | Crystal structure of the A(-31) Adenovirus major late promoter TATA box variant bound to wild-type TBP (Arabidopsis thaliana TBP isoform 2). TATA element recognition by the TATA box-binding protein has been conserved throughout evolution. | X-ray diffraction | 2.3 | 2000-02-07 | ||||
| 21 | 1QN7|1|E+ 1QN7|1|F | DNA (5'-D(*GP*CP*TP*AP*TP*AP*TP*AP*AP*GP*GP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*CP*CP*TP*TP*AP*TP*AP*TP*AP*GP*C)-3') | Crystal structure of the T(-27) Adenovirus major late promoter TATA box variant bound to wild-type TBP (Arabidopsis thaliana TBP isoform 2). TATA element recognition by the TATA box-binding protein has been conserved throughout evolution. | X-ray diffraction | 2.3 | 2000-02-07 | ||||
| 22 | 1QNC|1|E+ 1QNC|1|F | DNA (5'-D(*GP*CP*AP*AP*TP*AP*AP*AP*AP*GP*GP*GP*CP*A)-3'), DNA (5'-D(*TP*GP*CP*CP*CP*TP*TP*TP*TP*AP*TP*TP*GP*C)-3') | Crystal structure of the A(-31) Adenovirus major late promoter TATA box variant bound to wild-type TBP (Arabidopsis thaliana TBP isoform 2). TATA element recognition by the TATA box-binding protein has been conserved throughout evolution. | X-ray diffraction | 2.3 | 2000-02-07 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length | NAKB NA annotation | NAKB protein annotation |
|---|---|---|---|---|---|---|---|---|
| 1 | 1QN7|1|C+ 1QN7|1|D | Crystal structure of the T(-27) Adenovirus major late promoter TATA box variant bound to wild-type TBP (Arabidopsis thaliana TBP isoform 2). TATA element recognition by the TATA box-binding protein has been conserved throughout evolution. | X-RAY DIFFRACTION | 2.3 | 14 | B-form double helix,double helix,structure | β-sheet,DNA-binding transcription factor (TF),TATA binding protein,regulatory,transcription | |
| 2 | 1QN5|1|C+ 1QN5|1|D | Crystal structure of the G(-26) Adenovirus major late promoter TATA box variant bound to wild-type TBP (Arabidopsis thaliana TBP isoform 2). TATA element recognition by the TATA box-binding protein has been conserved throughout evolution. | X-RAY DIFFRACTION | 1.93 | 14 | double helix,structure | β-sheet,DNA-binding transcription factor (TF),TATA binding protein,regulatory,transcription | |
| 3 | 1QN9|1|C+ 1QN9|1|D | Crystal structure of the C(-29) Adenovirus major late promoter TATA box variant bound to wild-type TBP (Arabidopsis thaliana TBP isoform 2). TATA element recognition by the TATA box-binding protein has been conserved throughout evolution. | X-RAY DIFFRACTION | 1.9 | 14 | double helix,structure | β-sheet,DNA-binding transcription factor (TF),TATA binding protein,regulatory,transcription | |
| 4 | 1QN6|1|C+ 1QN6|1|D | Crystal structure of the T(-26) Adenovirus major late promoter TATA box variant bound to wild-type TBP (Arabidopsis thaliana TBP isoform 2). TATA element recognition by the TATA box-binding protein has been conserved throughout evolution. | X-RAY DIFFRACTION | 2.1 | 14 | B-form double helix,double helix,structure | β-sheet,DNA-binding transcription factor (TF),TATA binding protein,regulatory,transcription | |
| 5 | 1QNB|1|C+ 1QNB|1|D | Crystal structure of the T(-25) Adenovirus major late promoter TATA box variant bound to wild-type TBP (Arabidopsis thaliana TBP isoform 2). TATA element recognition by the TATA box-binding protein has been conserved throughout evolution. | X-RAY DIFFRACTION | 2.23 | 14 | B-form double helix,double helix,structure | β-sheet,DNA-binding transcription factor (TF),TATA binding protein,regulatory,transcription | |
| 6 | 1QN3|1|C+ 1QN3|1|D | Crystal structure of the C(-25) Adenovirus major late promoter TATA box variant bound to wild-type TBP (Arabidopsis thaliana TBP isoform 2). TATA element recognition by the TATA box-binding protein has been conserved throughout evolution. | X-RAY DIFFRACTION | 1.95 | 14 | β-sheet,DNA-binding transcription factor (TF),TATA binding protein,regulatory,transcription | ||
| 7 | 1QN3|1|E+ 1QN3|1|F | Crystal structure of the C(-25) Adenovirus major late promoter TATA box variant bound to wild-type TBP (Arabidopsis thaliana TBP isoform 2). TATA element recognition by the TATA box-binding protein has been conserved throughout evolution. | X-RAY DIFFRACTION | 1.95 | 14 | β-sheet,DNA-binding transcription factor (TF),TATA binding protein,regulatory,transcription | ||
| 8 | 1QNB|1|E+ 1QNB|1|F | Crystal structure of the T(-25) Adenovirus major late promoter TATA box variant bound to wild-type TBP (Arabidopsis thaliana TBP isoform 2). TATA element recognition by the TATA box-binding protein has been conserved throughout evolution. | X-RAY DIFFRACTION | 2.23 | 14 | B-form double helix,double helix,structure | β-sheet,DNA-binding transcription factor (TF),TATA binding protein,regulatory,transcription | |
| 9 | 1QN6|1|E+ 1QN6|1|F | Crystal structure of the T(-26) Adenovirus major late promoter TATA box variant bound to wild-type TBP (Arabidopsis thaliana TBP isoform 2). TATA element recognition by the TATA box-binding protein has been conserved throughout evolution. | X-RAY DIFFRACTION | 2.1 | 14 | B-form double helix,double helix,structure | β-sheet,DNA-binding transcription factor (TF),TATA binding protein,regulatory,transcription | |
| 10 | 1QN5|1|E+ 1QN5|1|F | Crystal structure of the G(-26) Adenovirus major late promoter TATA box variant bound to wild-type TBP (Arabidopsis thaliana TBP isoform 2). TATA element recognition by the TATA box-binding protein has been conserved throughout evolution. | X-RAY DIFFRACTION | 1.93 | 14 | double helix,structure | β-sheet,DNA-binding transcription factor (TF),TATA binding protein,regulatory,transcription | |
| 11 | 1QN7|1|E+ 1QN7|1|F | Crystal structure of the T(-27) Adenovirus major late promoter TATA box variant bound to wild-type TBP (Arabidopsis thaliana TBP isoform 2). TATA element recognition by the TATA box-binding protein has been conserved throughout evolution. | X-RAY DIFFRACTION | 2.3 | 14 | B-form double helix,double helix,structure | β-sheet,DNA-binding transcription factor (TF),TATA binding protein,regulatory,transcription | |
| 12 | 1QN9|1|E+ 1QN9|1|F | Crystal structure of the C(-29) Adenovirus major late promoter TATA box variant bound to wild-type TBP (Arabidopsis thaliana TBP isoform 2). TATA element recognition by the TATA box-binding protein has been conserved throughout evolution. | X-RAY DIFFRACTION | 1.9 | 14 | double helix,structure | β-sheet,DNA-binding transcription factor (TF),TATA binding protein,regulatory,transcription | |
| 13 | 1QN8|1|E+ 1QN8|1|F | Crystal structure of the T(-28) Adenovirus major late promoter TATA box variant bound to wild-type TBP (Arabidopsis thaliana TBP isoform 2). TATA element recognition by the TATA box-binding protein has been conserved throughout evolution. | X-RAY DIFFRACTION | 2.1 | 14 | B-form double helix,double helix,structure | β-sheet,DNA-binding transcription factor (TF),TATA binding protein,regulatory,transcription | |
| 14 | 1QN8|1|C+ 1QN8|1|D | Crystal structure of the T(-28) Adenovirus major late promoter TATA box variant bound to wild-type TBP (Arabidopsis thaliana TBP isoform 2). TATA element recognition by the TATA box-binding protein has been conserved throughout evolution. | X-RAY DIFFRACTION | 2.1 | 14 | B-form double helix,double helix,structure | β-sheet,DNA-binding transcription factor (TF),TATA binding protein,regulatory,transcription | |
| 15 | 1QNA|1|C+ 1QNA|1|D | Crystal structure of the T(-30) Adenovirus major late promoter TATA box variant bound to wild-type TBP (Arabidopsis thaliana TBP isoform 2). TATA element recognition by the TATA box-binding protein has been conserved throughout evolution. | X-RAY DIFFRACTION | 1.8 | 14 | B-form double helix,double helix,structure | β-sheet,DNA-binding transcription factor (TF),TATA binding protein,regulatory,transcription | |
| 16 | 1QNA|1|E+ 1QNA|1|F | Crystal structure of the T(-30) Adenovirus major late promoter TATA box variant bound to wild-type TBP (Arabidopsis thaliana TBP isoform 2). TATA element recognition by the TATA box-binding protein has been conserved throughout evolution. | X-RAY DIFFRACTION | 1.8 | 14 | B-form double helix,double helix,structure | β-sheet,DNA-binding transcription factor (TF),TATA binding protein,regulatory,transcription | |
| 17 | 1QNC|1|E+ 1QNC|1|F | Crystal structure of the A(-31) Adenovirus major late promoter TATA box variant bound to wild-type TBP (Arabidopsis thaliana TBP isoform 2). TATA element recognition by the TATA box-binding protein has been conserved throughout evolution. | X-RAY DIFFRACTION | 2.3 | 14 | B-form double helix,double helix,structure | β-sheet,DNA-binding transcription factor (TF),TATA binding protein,regulatory,transcription | |
| 18 | 1QNC|1|C+ 1QNC|1|D | Crystal structure of the A(-31) Adenovirus major late promoter TATA box variant bound to wild-type TBP (Arabidopsis thaliana TBP isoform 2). TATA element recognition by the TATA box-binding protein has been conserved throughout evolution. | X-RAY DIFFRACTION | 2.3 | 14 | B-form double helix,double helix,structure | β-sheet,DNA-binding transcription factor (TF),TATA binding protein,regulatory,transcription | |
| 19 | 1QNE|1|C+ 1QNE|1|D | Crystal structure of the Adenovirus major late promoter TATA box bound to wild-type TBP (Arabidopsis thaliana TBP isoform 2). | X-RAY DIFFRACTION | 1.9 | 14 | B-form double helix,double helix,structure | β-sheet,DNA-binding transcription factor (TF),TATA binding protein,regulatory,transcription | |
| 20 | 1QN4|1|C+ 1QN4|1|D | Crystal structure of the T(-24) Adenovirus major late promoter TATA box variant bound to wild-type TBP (Arabidopsis thaliana TBP isoform 2). TATA element recognition by the TATA box-binding protein has been conserved throughout evolution. | X-RAY DIFFRACTION | 1.86 | 14 | B-form double helix,double helix,structure | β-sheet,DNA-binding transcription factor (TF),TATA binding protein,regulatory,transcription | |
| 21 | 1QN4|1|E+ 1QN4|1|F | Crystal structure of the T(-24) Adenovirus major late promoter TATA box variant bound to wild-type TBP (Arabidopsis thaliana TBP isoform 2). TATA element recognition by the TATA box-binding protein has been conserved throughout evolution. | X-RAY DIFFRACTION | 1.86 | 14 | B-form double helix,double helix,structure | β-sheet,DNA-binding transcription factor (TF),TATA binding protein,regulatory,transcription | |
| 22 | 1QNE|1|E+ 1QNE|1|F | Crystal structure of the Adenovirus major late promoter TATA box bound to wild-type TBP (Arabidopsis thaliana TBP isoform 2). | X-RAY DIFFRACTION | 1.9 | 14 | B-form double helix,double helix,structure | β-sheet,DNA-binding transcription factor (TF),TATA binding protein,regulatory,transcription |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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