Equivalence class NR_2.5_03510.59 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 8CCS|1|c (rep) | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | 80S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complex | Electron microscopy | 1.97 | 2023-09-20 |
| 2 | 8CDR|1|c | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Translocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin | Electron microscopy | 2.04 | 2023-09-20 |
| 3 | 8CEH|1|c | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Translocation intermediate 4 (TI-4) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin | Electron microscopy | 2.05 | 2023-09-20 |
| 4 | 8EVP|1|B5 | Small subunit ribosomal RNA | 18S rRNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I | Electron microscopy | 2.38 | 2023-09-06 |
| 5 | 7ZW0|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA (RDN18-1) | Saccharomyces cerevisiae W303 | Eukarya | RF01960 | FAP-80S Complex - Rotated state | Electron microscopy | 2.4 | 2022-10-05 |
| 6 | 8BN3|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Yeast 80S, ES7s delta, eIF5A, Stm1 containing | Electron microscopy | 2.4 | 2024-01-10 |
| 7 | 8EWC|1|B5 | Small subunit ribosomal RNA | 18S rRNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure II | Electron microscopy | 2.45 | 2023-09-06 |
| 8 | 7ZUX|1|2 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Collided ribosome in a disome unit from S. cerevisiae | Electron microscopy | 2.5 | 2023-02-22 |
| 9 | 8CGN|1|c | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Non-rotated 80S S. cerevisiae ribosome with ligands | Electron microscopy | 2.28 | 2023-09-20 |
| 10 | 8CIV|1|c | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Translocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin | Electron microscopy | 2.47 | 2023-09-20 |
| 11 | 8EVT|1|B5 | Small subunit ribosomal RNA | 18S rRNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite map | Electron microscopy | 2.2 | 2023-09-06 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 8CIV|1|c | Translocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin | ELECTRON MICROSCOPY | 2.47 | 1604 | |
| 2 | 8CEH|1|c | Translocation intermediate 4 (TI-4) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin | ELECTRON MICROSCOPY | 2.05 | 1584 | |
| 3 | 8CDR|1|c | Translocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin | ELECTRON MICROSCOPY | 2.04 | 1584 | |
| 4 | 8BN3|1|2 | Yeast 80S, ES7s delta, eIF5A, Stm1 containing | ELECTRON MICROSCOPY | 2.4 | 1737 | |
| 5 | 8EWC|1|B5 | Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure II | ELECTRON MICROSCOPY | 2.45 | 1758 | |
| 6 | 8EVP|1|B5 | Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure I | ELECTRON MICROSCOPY | 2.38 | 1758 | |
| 7 | 8EVT|1|B5 | Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite map | ELECTRON MICROSCOPY | 2.2 | 1293 | |
| 8 | 7ZW0|1|2 | FAP-80S Complex - Rotated state | ELECTRON MICROSCOPY | 2.4 | 1765 | |
| 9 | 8CCS|1|c | 80S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complex | ELECTRON MICROSCOPY | 1.97 | 1580 | |
| 10 | 8CGN|1|c | Non-rotated 80S S. cerevisiae ribosome with ligands | ELECTRON MICROSCOPY | 2.28 | 1600 | |
| 11 | 7ZUX|1|2 | Collided ribosome in a disome unit from S. cerevisiae | ELECTRON MICROSCOPY | 2.5 | 1769 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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