#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
14YBB|1|DB (rep)5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001High-resolution structure of the Escherichia coli ribosomeX-ray diffraction2.12015-03-18
24YBB|1|CB5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001High-resolution structure of the Escherichia coli ribosomeX-ray diffraction2.12015-03-18
37K00|1|b5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Structure of the Bacterial Ribosome at 2 Angstrom ResolutionElectron microscopy1.982020-09-23
46XZ7|1|B5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001E. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet).Electron microscopy2.12020-07-22
57LVK|1|J5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Cfr-modified 50S subunit from Escherichia coliElectron microscopy2.22021-12-15
66PJ6|1|J5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001High resolution cryo-EM structure of E.coli 50SElectron microscopy2.22020-01-22
77N1P|1|55S ribosomal RNA5S rRNAEscherichia coli K-12BacteriaRF00001Elongating 70S ribosome complex in a classical pre-translocation (PRE-C) conformationElectron microscopy2.332021-07-14
87PJS|1|B5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001Structure of the 70S ribosome with tRNAs in the classical pre-translocation state and apramycin (C)Electron microscopy2.352021-10-20
97O1A|1|BB5S ribosomal RNARibosomal RNA 5SEscherichia coli K-12BacteriaRF00001Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome complex stalled in response to L-tryptophanElectron microscopy2.42021-09-01
107S1H|1|J5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Wild-type Escherichia coli ribosome with antibiotic linezolidElectron microscopy2.352021-11-17
117S1K|1|J5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Cfr-modified Escherichia coli stalled ribosome with antibiotic radezolidElectron microscopy2.422022-01-19
127BL4|1|B5S ribosomal RNA5S ribosomal RNAEscherichia coli K-12BacteriaRF00001in vitro reconstituted 50S-ObgE-GMPPNP-RsfS particleElectron microscopy2.42021-05-12
137S1J|1|J5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Wild-type Escherichia coli ribosome with antibiotic radezolidElectron microscopy2.472022-03-02
147S1G|1|J5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001wild-type Escherichia coli stalled ribosome with antibiotic linezolidElectron microscopy2.482021-11-17
157S1I|1|J5S ribosomal RNA5S rRNAEscherichia coliBacteriaRF00001Wild-type Escherichia coli stalled ribosome with antibiotic radezolidElectron microscopy2.482022-03-02
166PC6|1|J5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001E. coli 50S ribosome bound to compound 47Electron microscopy2.52020-06-17
176PCR|1|J5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001E. coli 50S ribosome bound to compound 40oElectron microscopy2.52020-06-17
186PC7|1|J5S ribosomal RNA5S ribosomal RNAEscherichia coliBacteriaRF00001E. coli 50S ribosome bound to compound 46Electron microscopy2.52020-06-17

Release history

Release3.2223.2233.2243.2253.2263.227
Date2022-03-162022-03-232022-03-302022-04-062022-04-132022-04-20

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_2.5_10157.90NR_2.5_10157.893.222(18) 4YBB|1|CB, 4YBB|1|DB, 6PC6|1|J, 6PC7|1|J, 6PCR|1|J, 6PJ6|1|J, 6XZ7|1|B, 7BL4|1|B, 7K00|1|b, 7LVK|1|J, 7N1P|1|5, 7O1A|1|BB, 7PJS|1|B, 7S1G|1|J, 7S1H|1|J, 7S1I|1|J, 7S1J|1|J, 7S1K|1|J(0) (0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_2.5_10157.90NR_2.5_10157.913.228(18) 4YBB|1|CB, 4YBB|1|DB, 6PC6|1|J, 6PC7|1|J, 6PCR|1|J, 6PJ6|1|J, 6XZ7|1|B, 7BL4|1|B, 7K00|1|b, 7LVK|1|J, 7N1P|1|5, 7O1A|1|BB, 7PJS|1|B, 7S1G|1|J, 7S1H|1|J, 7S1I|1|J, 7S1J|1|J, 7S1K|1|J(0) (0)

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLength
17BL4|1|Bin vitro reconstituted 50S-ObgE-GMPPNP-RsfS particleELECTRON MICROSCOPY2.4119
26PC7|1|JE. coli 50S ribosome bound to compound 46ELECTRON MICROSCOPY2.5118
36PC6|1|JE. coli 50S ribosome bound to compound 47ELECTRON MICROSCOPY2.5118
46PCR|1|JE. coli 50S ribosome bound to compound 40oELECTRON MICROSCOPY2.5118
57S1J|1|JWild-type Escherichia coli ribosome with antibiotic radezolidELECTRON MICROSCOPY2.47118
67S1K|1|JCfr-modified Escherichia coli stalled ribosome with antibiotic radezolidELECTRON MICROSCOPY2.42118
77S1H|1|JWild-type Escherichia coli ribosome with antibiotic linezolidELECTRON MICROSCOPY2.35118
87S1G|1|Jwild-type Escherichia coli stalled ribosome with antibiotic linezolidELECTRON MICROSCOPY2.48118
97S1I|1|JWild-type Escherichia coli stalled ribosome with antibiotic radezolidELECTRON MICROSCOPY2.48118
107O1A|1|BBCryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome complex stalled in response to L-tryptophanELECTRON MICROSCOPY2.4120
116XZ7|1|BE. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet).ELECTRON MICROSCOPY2.1120
127K00|1|bStructure of the Bacterial Ribosome at 2 Angstrom ResolutionELECTRON MICROSCOPY1.98119
137N1P|1|5Elongating 70S ribosome complex in a classical pre-translocation (PRE-C) conformationELECTRON MICROSCOPY2.33120
147LVK|1|JCfr-modified 50S subunit from Escherichia coliELECTRON MICROSCOPY2.2118
156PJ6|1|JHigh resolution cryo-EM structure of E.coli 50SELECTRON MICROSCOPY2.2118
164YBB|1|CBHigh-resolution structure of the Escherichia coli ribosomeX-RAY DIFFRACTION2.1118
174YBB|1|DBHigh-resolution structure of the Escherichia coli ribosomeX-RAY DIFFRACTION2.1120
187PJS|1|BStructure of the 70S ribosome with tRNAs in the classical pre-translocation state and apramycin (C)ELECTRON MICROSCOPY2.35120

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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