RNA 3D Hub //

Equivalence class NR_2.5_18586.64 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
18CCS|1|BB (rep)5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF0000180S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complexElectron microscopy1.972023-09-20
28CDR|1|BB5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Translocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarinElectron microscopy2.042023-09-20
38CEH|1|BB5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Translocation intermediate 4 (TI-4) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarinElectron microscopy2.052023-09-20
48P8N|1|LE5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Mouse RPL39 integrated into the yeast 60S ribosomal subunitElectron microscopy2.152024-06-12
58PFR|1|LE5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Mouse RPL39L integrated into the yeast 60S ribosomal subunitElectron microscopy2.152024-06-26
68EVT|1|A35S ribosomal RNA5s rRNASaccharomyces cerevisiaeEukaryaRF00001Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite mapElectron microscopy2.22023-09-06
78P8U|1|LE5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Yeast 60S ribosomal subunitElectron microscopy2.232024-06-12
88CGN|1|BB5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Non-rotated 80S S. cerevisiae ribosome with ligandsElectron microscopy2.282023-09-20
97UOO|1|35S ribosomal RNA5S rRNASaccharomyces cerevisiae BY4741EukaryaRF00001Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation stateElectron microscopy2.342023-03-15
108EVP|1|A35S ribosomal RNA5s rRNASaccharomyces cerevisiaeEukaryaRF00001Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure IElectron microscopy2.382023-09-06
117V08|1|35S ribosomal RNA5S rRNASaccharomyces cerevisiae BY4741EukaryaRF00001Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a Spb1 D52A suppressor 3 strainElectron microscopy2.362023-03-15
127ZW0|1|LC5S ribosomal RNA5S ribosomal RNA (RDN5-1)Saccharomyces cerevisiae W303EukaryaRF00001FAP-80S Complex - Rotated stateElectron microscopy2.42022-10-05
138AGX|1|h5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Yeast RQC complex in state with the RING domain of Ltn1 in the IN positionElectron microscopy2.42023-03-08
148BN3|1|35S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Yeast 80S, ES7s delta, eIF5A, Stm1 containingElectron microscopy2.42024-01-10
157TOP|1|A5S5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20Electron microscopy2.42022-05-25
168EWC|1|A35S ribosomal RNA5s rRNASaccharomyces cerevisiaeEukaryaRF00001Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure IIElectron microscopy2.452023-09-06
177UQB|1|35S ribosomal RNA5S rRNASaccharomyces cerevisiae BY4741EukaryaRF00001Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1-D52A strain with AlF4Electron microscopy2.432023-03-15
188CIV|1|BB5S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Translocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarinElectron microscopy2.472023-09-20
197UQZ|1|35S ribosomal RNA5S rRNASaccharomyces cerevisiae BY4741EukaryaRF00001Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1 D52A strainElectron microscopy2.442023-03-15
207ZUX|1|45S ribosomal RNA5S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00001Collided ribosome in a disome unit from S. cerevisiaeElectron microscopy2.52023-02-22
218AAF|1|h5S ribosomal RNA5S rRNASaccharomyces cerevisiaeEukaryaRF00001Yeast RQC complex in state GElectron microscopy2.52023-03-08

Release history

Release3.3433.3443.3453.3463.3473.3483.3493.3503.3513.3523.3533.3543.3553.356
Date2024-07-102024-07-172024-07-252024-07-312024-08-072024-08-142024-08-212024-08-282024-09-042024-09-112024-09-182024-09-252024-10-022024-10-09

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLength
18CCS|1|BB80S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complexELECTRON MICROSCOPY1.97121
28CEH|1|BBTranslocation intermediate 4 (TI-4) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarinELECTRON MICROSCOPY2.05121
38CDR|1|BBTranslocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarinELECTRON MICROSCOPY2.04121
48CIV|1|BBTranslocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarinELECTRON MICROSCOPY2.47121
58CGN|1|BBNon-rotated 80S S. cerevisiae ribosome with ligandsELECTRON MICROSCOPY2.28121
68EVP|1|A3Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure IELECTRON MICROSCOPY2.38121
78EVT|1|A3Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) refined against a composite mapELECTRON MICROSCOPY2.2121
88EWC|1|A3Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), Structure IIELECTRON MICROSCOPY2.45121
97ZUX|1|4Collided ribosome in a disome unit from S. cerevisiaeELECTRON MICROSCOPY2.5121
107ZW0|1|LCFAP-80S Complex - Rotated stateELECTRON MICROSCOPY2.4121
118AGX|1|hYeast RQC complex in state with the RING domain of Ltn1 in the IN positionELECTRON MICROSCOPY2.4121
128AAF|1|hYeast RQC complex in state GELECTRON MICROSCOPY2.5121
138BN3|1|3Yeast 80S, ES7s delta, eIF5A, Stm1 containingELECTRON MICROSCOPY2.4121
147TOP|1|A5SYeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20ELECTRON MICROSCOPY2.4121
158P8U|1|LEYeast 60S ribosomal subunitELECTRON MICROSCOPY2.23121
168PFR|1|LEMouse RPL39L integrated into the yeast 60S ribosomal subunitELECTRON MICROSCOPY2.15121
178P8N|1|LEMouse RPL39 integrated into the yeast 60S ribosomal subunitELECTRON MICROSCOPY2.15121
187UQB|1|3Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1-D52A strain with AlF4ELECTRON MICROSCOPY2.43120
197UOO|1|3Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation stateELECTRON MICROSCOPY2.34120
207UQZ|1|3Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1 D52A strainELECTRON MICROSCOPY2.44120
217V08|1|3Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a Spb1 D52A suppressor 3 strainELECTRON MICROSCOPY2.36120

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


Coloring options:

Copyright 2024 BGSU RNA group. Page generated in 0.0614 s