Equivalence class NR_2.5_25585.2 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4Z4D|1|B+ 4Z4D|1|D (rep) | RNA (5'-R(*CP*AP*AP*UP*GP*UP*GP*AP*G)-3'), RNA (5'-R(P*UP*UP*CP*AP*CP*AP*UP*UP*GP*CP*CP*CP*AP*AP*GP*UP*CP*UP*UP*U)-3') | synthetic construct | Human Argonaute2 Bound to t1-G Target RNA | X-ray diffraction | 1.6 | 2015-09-23 | |||
| 2 | 4Z4E|1|B+ 4Z4E|1|D | RNA (5'-R(*CP*AP*AP*UP*GP*UP*GP*AP*U)-3'), RNA (5'-R(P*UP*UP*CP*AP*CP*AP*UP*UP*GP*CP*CP*CP*AP*AP*GP*UP*CP*UP*U)-3') | synthetic construct | Human Argonaute2 Bound to t1-U Target RNA | X-ray diffraction | 1.8 | 2015-09-23 | |||
| 3 | 4W5O|1|B+ 4W5O|1|D | RNA (5'-R(*CP*AP*AP*UP*GP*UP*GP*AP*AP*A)-3'), RNA (5'-R(P*UP*UP*CP*AP*CP*AP*UP*UP*GP*CP*CP*CP*AP*AP*GP*UP*CP*UP*UP*U)-3') | synthetic construct | The Crystal Structure of Human Argonaute2 Bound to a Guide and Target RNA Containing Seed Pairing from 2-9 | X-ray diffraction | 1.8 | 2014-11-12 | |||
| 4 | 4Z4C|1|B+ 4Z4C|1|D | RNA (5'-R(*CP*AP*AP*UP*GP*UP*GP*AP*C)-3'), RNA (5'-R(P*UP*UP*CP*AP*CP*AP*UP*UP*GP*CP*CP*CP*AP*AP*GP*UP*CP*UP*U)-3') | synthetic construct | Human Argonaute2 Bound to t1-C Target RNA | X-ray diffraction | 2.3 | 2015-09-23 | |||
| 5 | 4Z4H|1|B+ 4Z4H|1|D | RNA (5'-R(*CP*AP*AP*UP*GP*UP*GP*A)-3'), RNA (5'-R(P*UP*UP*CP*AP*CP*AP*UP*UP*GP*CP*CP*CP*AP*AP*GP*UP*CP*UP*UP*U)-3') | synthetic construct | Human Argonaute2 A481T Mutant Bound to t1-A Target RNA | X-ray diffraction | 2.5 | 2015-09-23 | |||
| 6 | 4W5T|1|B+ 4W5T|1|D | RNA (5'-R(*AP*CP*AP*UP*GP*UP*GP*AP*AP*A)-3'), RNA (5'-R(P*UP*UP*CP*AP*CP*AP*UP*UP*GP*CP*CP*CP*AP*AP*UP*U)-3') | synthetic construct | The Crystal Structure of Human Argonaute2 Bound to a Guide and Target RNA Containing Seed Pairing from 2-7 | X-ray diffraction | 2.5 | 2014-11-12 | |||
| 7 | 4W5R|1|B+ 4W5R|1|D | RNA (5'-R(P*AP*AP*UP*GP*UP*GP*AP*AP*A)-3'), RNA (5'-R(P*UP*UP*CP*AP*CP*AP*UP*UP*GP*UP*U)-3') | synthetic construct | The Crystal Structure of Human Argonaute2 Bound to a Guide and Target RNA Containing Seed Pairing from 2-8 (Long Target) | X-ray diffraction | 2.5 | 2014-11-12 |
Release history
| Release | 2.93 | 2.94 | 2.95 | 2.96 | 2.97 | 2.98 | 2.99 | 2.100 | 2.101 | 2.102 | 2.103 | 2.104 | 2.105 | 2.106 | 2.107 | 2.108 | 2.109 | 2.110 | 2.111 | 2.112 | 2.113 | 2.114 | 2.115 | 2.116 | 2.117 | 2.118 | 2.119 | 2.120 | 2.121 | 2.122 | 2.123 | 2.124 | 2.125 | 2.126 | 2.127 | 2.128 | 2.129 | 2.130 | 2.131 | 2.132 | 2.133 | 2.134 | 2.135 | 2.136 | 2.137 | 2.138 | 2.139 | 2.140 | 2.141 | 2.142 | 2.143 | 2.144 | 2.145 | 2.146 | 2.147 | 2.148 | 2.149 | 2.150 | 2.151 | 2.152 | 2.153 | 2.154 | 2.155 | 2.156 | 2.157 | 2.158 | 3.0 | 3.1 | 3.2 | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 | 3.12 | 3.13 | 3.14 | 3.15 | 3.16 | 3.17 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2016-09-16 | 2016-09-23 | 2016-09-30 | 2016-10-07 | 2016-10-14 | 2016-10-21 | 2016-10-28 | 2016-11-04 | 2016-11-11 | 2016-11-18 | 2016-11-25 | 2016-12-02 | 2016-12-09 | 2016-12-16 | 2016-12-23 | 2016-12-30 | 2017-01-06 | 2017-01-13 | 2017-01-20 | 2017-01-27 | 2017-02-03 | 2017-02-10 | 2017-02-17 | 2017-02-24 | 2017-03-03 | 2017-03-10 | 2017-03-17 | 2017-03-24 | 2017-03-31 | 2017-04-11 | 2017-04-15 | 2017-04-26 | 2017-04-29 | 2017-05-09 | 2017-05-15 | 2017-05-20 | 2017-05-27 | 2017-06-07 | 2017-06-11 | 2017-06-21 | 2017-06-24 | 2017-06-28 | 2017-07-04 | 2017-07-10 | 2017-07-15 | 2017-07-26 | 2017-07-31 | 2017-08-05 | 2017-08-12 | 2017-08-19 | 2017-08-26 | 2017-09-03 | 2017-09-09 | 2017-09-16 | 2017-09-23 | 2017-09-30 | 2017-10-07 | 2017-10-14 | 2017-10-21 | 2017-10-28 | 2017-11-03 | 2017-11-10 | 2017-11-17 | 2017-11-24 | 2017-12-01 | 2017-12-08 | 2017-12-15 | 2017-12-22 | 2017-12-29 | 2018-01-05 | 2018-01-12 | 2018-01-19 | 2018-01-26 | 2018-02-02 | 2018-02-09 | 2018-02-16 | 2018-02-23 | 2018-03-01 | 2018-03-08 | 2018-03-15 | 2018-03-22 | 2018-03-29 | 2018-04-06 | 2018-04-13 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_2.5_25585.2 | NR_2.5_25585.1 | 2.93 | (7) 4W5O|1|B+4W5O|1|D, 4W5R|1|B+4W5R|1|D, 4W5T|1|B+4W5T|1|D, 4Z4C|1|B+4Z4C|1|D, 4Z4D|1|B+4Z4D|1|D, 4Z4E|1|B+4Z4E|1|D, 4Z4H|1|B+4Z4H|1|D | (0) | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_2.5_25585.2 | NR_2.5_25585.3 | 3.18 | (7) 4W5O|1|B+4W5O|1|D, 4W5R|1|B+4W5R|1|D, 4W5T|1|B+4W5T|1|D, 4Z4C|1|B+4Z4C|1|D, 4Z4D|1|B+4Z4D|1|D, 4Z4E|1|B+4Z4E|1|D, 4Z4H|1|B+4Z4H|1|D | (0) | (1) 6CBD|1|B+6CBD|1|C |
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 4Z4E|1|B+ 4Z4E|1|D | Human Argonaute2 Bound to t1-U Target RNA | X-RAY DIFFRACTION | 1.8 | 19 | |
| 2 | 4Z4C|1|B+ 4Z4C|1|D | Human Argonaute2 Bound to t1-C Target RNA | X-RAY DIFFRACTION | 2.3 | 19 | |
| 3 | 4Z4D|1|B+ 4Z4D|1|D | Human Argonaute2 Bound to t1-G Target RNA | X-RAY DIFFRACTION | 1.6 | 20 | |
| 4 | 4W5O|1|B+ 4W5O|1|D | The Crystal Structure of Human Argonaute2 Bound to a Guide and Target RNA Containing Seed Pairing from 2-9 | X-RAY DIFFRACTION | 1.8 | 20 | |
| 5 | 4Z4H|1|B+ 4Z4H|1|D | Human Argonaute2 A481T Mutant Bound to t1-A Target RNA | X-RAY DIFFRACTION | 2.5 | 20 | |
| 6 | 4W5R|1|B+ 4W5R|1|D | The Crystal Structure of Human Argonaute2 Bound to a Guide and Target RNA Containing Seed Pairing from 2-8 (Long Target) | X-RAY DIFFRACTION | 2.5 | 11 | |
| 7 | 4W5T|1|B+ 4W5T|1|D | The Crystal Structure of Human Argonaute2 Bound to a Guide and Target RNA Containing Seed Pairing from 2-7 | X-RAY DIFFRACTION | 2.5 | 16 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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