Equivalence class NR_2.5_27927.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | #NTs | Date |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 1MWL|1|A+ 1MWL|1|B (rep) | 5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3' | Crystal structure of geneticin bound to the eubacterial 16S rRNA A site | X-ray diffraction | 2.4 | 42 | 2003-02-18 | ||||
| 2 | 4F8U|1|A+ 4F8U|1|B | RNA (5'-R(P*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'), RNA (5'-R(P*UP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3') | Crystal structure of the bacterial ribosomal decoding site in complex with sisomicin (C2 form) | X-ray diffraction | 2 | 43 | 2012-08-15 | ||||
| 3 | 2ET4|1|A+ 2ET4|1|B | 5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3' | Complex Between Neomycin B and the 16S-RRNA A-Site | X-ray diffraction | 2.4 | 42 | 2005-12-13 | ||||
| 4 | 2ESJ|1|A+ 2ESJ|1|B | 5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3' | Complex between Lividomycin A and the 16S-Rrna A Site | X-ray diffraction | 2.2 | 42 | 2005-12-20 | ||||
| 5 | 2ET8|1|A+ 2ET8|1|B | 5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3' | Complex Between Neamine and the 16S-RRNA A-Site | X-ray diffraction | 2.5 | 42 | 2005-12-13 | ||||
| 6 | 1J7T|1|A+ 1J7T|1|B | 5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3' | Complex between Paromomycin and the 16S-rRNA A-site at 2.5 A resolution | X-ray diffraction | 2.5 | 42 | 2002-05-18 | ||||
| 7 | 2ET5|1|A+ 2ET5|1|B | 5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3' | Complex Between Ribostamycin and the 16S-RRNA A-Site | X-ray diffraction | 2.2 | 42 | 2005-12-13 | ||||
| 8 | 3BNT|1|A | A site of human mitochondrial ribosome | Crystal Structure of the Homo sapiens Mitochondrial Ribosomal Decoding Site in the Presence of [Co(NH3)6]Cl3 (A1555G mutant, Br-derivative) | X-ray diffraction | 2.3 | 22 | 2008-06-24 | ||||
| 9 | 1O9M|1|A+ 1O9M|1|B | EUBACTERIAL A-SITE | Escherichia coli | The Complex of a novel antibiotic with the Aminoacyl Site of the Bacterial Ribosome Revealed by X-Ray Crystallography. | X-ray diffraction | 2.4 | 42 | 2003-03-27 |
Release history
| Release | 2.0 | 2.1 | 2.2 | 2.3 | 2.4 | 2.5 | 2.6 | 2.7 | 2.8 | 2.9 | 2.10 | 2.11 | 2.12 | 2.13 | 2.14 | 2.15 | 2.16 | 2.17 | 2.18 | 2.19 | 2.20 | 2.21 | 2.22 | 2.23 | 2.24 | 2.25 | 2.26 | 2.27 | 2.28 | 2.29 | 2.30 | 2.31 | 2.32 | 2.33 | 2.34 | 2.35 | 2.36 | 2.37 | 2.38 | 2.39 | 2.40 | 2.41 | 2.42 | 2.43 | 2.44 | 2.45 | 2.46 | 2.47 | 2.48 | 2.49 | 2.50 | 2.51 | 2.52 | 2.53 | 2.54 | 2.55 | 2.56 | 2.57 | 2.58 | 2.59 | 2.60 | 2.61 | 2.62 | 2.63 | 2.64 | 2.65 | 2.66 | 2.67 | 2.68 | 2.69 | 2.70 | 2.71 | 2.72 | 2.73 | 2.74 | 2.75 | 2.76 | 2.77 | 2.78 | 2.79 | 2.80 | 2.81 | 2.82 | 2.83 | 2.84 | 2.85 | 2.86 | 2.87 | 2.88 | 2.89 | 2.90 | 2.91 | 2.92 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2014-12-05 | 2014-12-12 | 2014-12-19 | 2014-12-26 | 2015-01-02 | 2015-01-09 | 2015-01-16 | 2015-01-23 | 2015-01-30 | 2015-02-06 | 2015-02-13 | 2015-02-20 | 2015-02-27 | 2015-03-06 | 2015-03-13 | 2015-03-20 | 2015-03-27 | 2015-04-03 | 2015-04-10 | 2015-04-17 | 2015-04-24 | 2015-05-01 | 2015-05-08 | 2015-05-15 | 2015-05-22 | 2015-05-29 | 2015-06-05 | 2015-06-12 | 2015-06-19 | 2015-06-26 | 2015-07-03 | 2015-07-10 | 2015-07-17 | 2015-07-24 | 2015-07-31 | 2015-08-07 | 2015-08-14 | 2015-08-21 | 2015-08-28 | 2015-09-04 | 2015-09-11 | 2015-09-18 | 2015-09-25 | 2015-10-02 | 2015-10-09 | 2015-10-16 | 2015-10-23 | 2015-10-30 | 2015-11-06 | 2015-11-13 | 2015-11-20 | 2015-11-27 | 2015-12-04 | 2015-12-11 | 2015-12-18 | 2015-12-25 | 2016-01-01 | 2016-01-08 | 2016-01-15 | 2016-01-22 | 2016-01-29 | 2016-02-05 | 2016-02-12 | 2016-02-19 | 2016-02-26 | 2016-03-04 | 2016-03-11 | 2016-03-18 | 2016-03-25 | 2016-04-01 | 2016-04-08 | 2016-04-15 | 2016-04-22 | 2016-04-29 | 2016-05-06 | 2016-05-13 | 2016-05-20 | 2016-05-27 | 2016-06-03 | 2016-06-10 | 2016-06-17 | 2016-06-24 | 2016-07-01 | 2016-07-08 | 2016-07-15 | 2016-07-22 | 2016-07-29 | 2016-08-05 | 2016-08-12 | 2016-08-19 | 2016-08-26 | 2016-09-02 | 2016-09-09 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_2.5_27927.1 | NR_2.5_21191.1 | 2.93 | (1) 3BNT|1|A | (8) 1J7T|1|A+1J7T|1|B, 1MWL|1|A+1MWL|1|B, 1O9M|1|A+1O9M|1|B, 2ESJ|1|A+2ESJ|1|B, 2ET4|1|A+2ET4|1|B, 2ET5|1|A+2ET5|1|B, 2ET8|1|A+2ET8|1|B, 4F8U|1|A+4F8U|1|B | (0) |
| NR_2.5_27927.1 | NR_2.5_52295.1 | 2.93 | (2) 1O9M|1|A+1O9M|1|B, 2ET8|1|A+2ET8|1|B | (7) 1J7T|1|A+1J7T|1|B, 1MWL|1|A+1MWL|1|B, 2ESJ|1|A+2ESJ|1|B, 2ET4|1|A+2ET4|1|B, 2ET5|1|A+2ET5|1|B, 3BNT|1|A, 4F8U|1|A+4F8U|1|B | (0) |
| NR_2.5_27927.1 | NR_2.5_97151.1 | 2.93 | (6) 1J7T|1|A+1J7T|1|B, 1MWL|1|A+1MWL|1|B, 2ESJ|1|A+2ESJ|1|B, 2ET4|1|A+2ET4|1|B, 2ET5|1|A+2ET5|1|B, 4F8U|1|A+4F8U|1|B | (3) 1O9M|1|A+1O9M|1|B, 2ET8|1|A+2ET8|1|B, 3BNT|1|A | (7) 2PWT|1|A+2PWT|1|B, 3TD1|1|B+3TD1|1|A, 3WRU|1|A+3WRU|1|B, 4K32|1|A+4K32|1|B, 4P3S|1|B+4P3S|1|A, 4WCP|1|A+4WCP|1|B+4WCP|1|C, 4WCQ|1|A+4WCQ|1|B |
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | #NTs |
|---|---|---|---|---|---|---|
| 1 | 2ET8|1|A+ 2ET8|1|B | Complex Between Neamine and the 16S-RRNA A-Site | X-RAY DIFFRACTION | 2.5 | 42 | |
| 2 | 1O9M|1|A+ 1O9M|1|B | The Complex of a novel antibiotic with the Aminoacyl Site of the Bacterial Ribosome Revealed by X-Ray Crystallography. | X-RAY DIFFRACTION | 2.4 | 42 | |
| 3 | 2ESJ|1|A+ 2ESJ|1|B | Complex between Lividomycin A and the 16S-Rrna A Site | X-RAY DIFFRACTION | 2.2 | 42 | |
| 4 | 2ET5|1|A+ 2ET5|1|B | Complex Between Ribostamycin and the 16S-RRNA A-Site | X-RAY DIFFRACTION | 2.2 | 42 | |
| 5 | 2ET4|1|A+ 2ET4|1|B | Complex Between Neomycin B and the 16S-RRNA A-Site | X-RAY DIFFRACTION | 2.4 | 42 | |
| 6 | 1J7T|1|A+ 1J7T|1|B | Complex between Paromomycin and the 16S-rRNA A-site at 2.5 A resolution | X-RAY DIFFRACTION | 2.5 | 42 | |
| 7 | 1MWL|1|A+ 1MWL|1|B | Crystal structure of geneticin bound to the eubacterial 16S rRNA A site | X-RAY DIFFRACTION | 2.4 | 42 | |
| 8 | 4F8U|1|A+ 4F8U|1|B | Crystal structure of the bacterial ribosomal decoding site in complex with sisomicin (C2 form) | X-RAY DIFFRACTION | 2 | 43 | |
| 9 | 3BNT|1|A | Crystal Structure of the Homo sapiens Mitochondrial Ribosomal Decoding Site in the Presence of [Co(NH3)6]Cl3 (A1555G mutant, Br-derivative) | X-RAY DIFFRACTION | 2.3 | 22 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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