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Equivalence class NR_2.5_27927.1 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
11MWL|1|A+ 1MWL|1|B (rep)5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'Crystal structure of geneticin bound to the eubacterial 16S rRNA A siteX-ray diffraction2.42003-02-18
24F8U|1|A+ 4F8U|1|BRNA (5'-R(P*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'), RNA (5'-R(P*UP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3')Crystal structure of the bacterial ribosomal decoding site in complex with sisomicin (C2 form)X-ray diffraction22012-08-15
32ET4|1|A+ 2ET4|1|B5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'Complex Between Neomycin B and the 16S-RRNA A-SiteX-ray diffraction2.42005-12-13
42ESJ|1|A+ 2ESJ|1|B5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'Complex between Lividomycin A and the 16S-Rrna A SiteX-ray diffraction2.22005-12-20
52ET8|1|A+ 2ET8|1|B5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'Complex Between Neamine and the 16S-RRNA A-SiteX-ray diffraction2.52005-12-13
61J7T|1|A+ 1J7T|1|B5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'Complex between Paromomycin and the 16S-rRNA A-site at 2.5 A resolutionX-ray diffraction2.52002-05-18
72ET5|1|A+ 2ET5|1|B5'-R(*CP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'Complex Between Ribostamycin and the 16S-RRNA A-SiteX-ray diffraction2.22005-12-13
83BNT|1|AA site of human mitochondrial ribosomeCrystal Structure of the Homo sapiens Mitochondrial Ribosomal Decoding Site in the Presence of [Co(NH3)6]Cl3 (A1555G mutant, Br-derivative)X-ray diffraction2.32008-06-24
91O9M|1|A+ 1O9M|1|BEUBACTERIAL A-SITEEscherichia coliThe Complex of a novel antibiotic with the Aminoacyl Site of the Bacterial Ribosome Revealed by X-Ray Crystallography.X-ray diffraction2.42003-03-27

Release history

Release2.02.12.22.32.42.52.62.72.82.92.102.112.122.132.142.152.162.172.182.192.202.212.222.232.242.252.262.272.282.292.302.312.322.332.342.352.362.372.382.392.402.412.422.432.442.452.462.472.482.492.502.512.522.532.542.552.562.572.582.592.602.612.622.632.642.652.662.672.682.692.702.712.722.732.742.752.762.772.782.792.802.812.822.832.842.852.862.872.882.892.902.912.92
Date2014-12-052014-12-122014-12-192014-12-262015-01-022015-01-092015-01-162015-01-232015-01-302015-02-062015-02-132015-02-202015-02-272015-03-062015-03-132015-03-202015-03-272015-04-032015-04-102015-04-172015-04-242015-05-012015-05-082015-05-152015-05-222015-05-292015-06-052015-06-122015-06-192015-06-262015-07-032015-07-102015-07-172015-07-242015-07-312015-08-072015-08-142015-08-212015-08-282015-09-042015-09-112015-09-182015-09-252015-10-022015-10-092015-10-162015-10-232015-10-302015-11-062015-11-132015-11-202015-11-272015-12-042015-12-112015-12-182015-12-252016-01-012016-01-082016-01-152016-01-222016-01-292016-02-052016-02-122016-02-192016-02-262016-03-042016-03-112016-03-182016-03-252016-04-012016-04-082016-04-152016-04-222016-04-292016-05-062016-05-132016-05-202016-05-272016-06-032016-06-102016-06-172016-06-242016-07-012016-07-082016-07-152016-07-222016-07-292016-08-052016-08-122016-08-192016-08-262016-09-022016-09-09

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_2.5_27927.1NR_2.5_21191.12.93(1) 3BNT|1|A(8) 1J7T|1|A+1J7T|1|B, 1MWL|1|A+1MWL|1|B, 1O9M|1|A+1O9M|1|B, 2ESJ|1|A+2ESJ|1|B, 2ET4|1|A+2ET4|1|B, 2ET5|1|A+2ET5|1|B, 2ET8|1|A+2ET8|1|B, 4F8U|1|A+4F8U|1|B(0)
NR_2.5_27927.1NR_2.5_52295.12.93(2) 1O9M|1|A+1O9M|1|B, 2ET8|1|A+2ET8|1|B(7) 1J7T|1|A+1J7T|1|B, 1MWL|1|A+1MWL|1|B, 2ESJ|1|A+2ESJ|1|B, 2ET4|1|A+2ET4|1|B, 2ET5|1|A+2ET5|1|B, 3BNT|1|A, 4F8U|1|A+4F8U|1|B(0)
NR_2.5_27927.1NR_2.5_97151.12.93(6) 1J7T|1|A+1J7T|1|B, 1MWL|1|A+1MWL|1|B, 2ESJ|1|A+2ESJ|1|B, 2ET4|1|A+2ET4|1|B, 2ET5|1|A+2ET5|1|B, 4F8U|1|A+4F8U|1|B(3) 1O9M|1|A+1O9M|1|B, 2ET8|1|A+2ET8|1|B, 3BNT|1|A(7) 2PWT|1|A+2PWT|1|B, 3TD1|1|B+3TD1|1|A, 3WRU|1|A+3WRU|1|B, 4K32|1|A+4K32|1|B, 4P3S|1|B+4P3S|1|A, 4WCP|1|A+4WCP|1|B+4WCP|1|C, 4WCQ|1|A+4WCQ|1|B

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLength
12ET8|1|A+ 2ET8|1|BComplex Between Neamine and the 16S-RRNA A-SiteX-RAY DIFFRACTION2.521
21O9M|1|A+ 1O9M|1|BThe Complex of a novel antibiotic with the Aminoacyl Site of the Bacterial Ribosome Revealed by X-Ray Crystallography.X-RAY DIFFRACTION2.421
32ESJ|1|A+ 2ESJ|1|BComplex between Lividomycin A and the 16S-Rrna A SiteX-RAY DIFFRACTION2.221
42ET5|1|A+ 2ET5|1|BComplex Between Ribostamycin and the 16S-RRNA A-SiteX-RAY DIFFRACTION2.221
52ET4|1|A+ 2ET4|1|BComplex Between Neomycin B and the 16S-RRNA A-SiteX-RAY DIFFRACTION2.421
61J7T|1|A+ 1J7T|1|BComplex between Paromomycin and the 16S-rRNA A-site at 2.5 A resolutionX-RAY DIFFRACTION2.521
71MWL|1|A+ 1MWL|1|BCrystal structure of geneticin bound to the eubacterial 16S rRNA A siteX-RAY DIFFRACTION2.424
84F8U|1|A+ 4F8U|1|BCrystal structure of the bacterial ribosomal decoding site in complex with sisomicin (C2 form)X-RAY DIFFRACTION222
93BNT|1|ACrystal Structure of the Homo sapiens Mitochondrial Ribosomal Decoding Site in the Presence of [Co(NH3)6]Cl3 (A1555G mutant, Br-derivative)X-RAY DIFFRACTION2.321

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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