Equivalence class NR_2.5_42622.58 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 7RQB|1|1B (rep) | 5S ribosomal RNA | 5S Ribosomal RNA | Thermus thermophilus HB8 | Bacteria | RF00001 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MAI-tripeptidyl-tRNA analog ACCA-IAM at 2.45A resolution | X-ray diffraction | 2.45 | 2022-01-26 |
| 2 | 4Y4O|1|1B | 5S ribosomal RNA | 5S Ribosomal RNA | Thermus thermophilus | Bacteria | RF00001 | Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution | X-ray diffraction | 2.3 | 2015-03-18 |
| 3 | 4Y4O|1|2B | 5S ribosomal RNA | 5S Ribosomal RNA | Thermus thermophilus | Bacteria | RF00001 | Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution | X-ray diffraction | 2.3 | 2015-03-18 |
| 4 | 7RQB|1|2B | 5S ribosomal RNA | 5S Ribosomal RNA | Thermus thermophilus HB8 | Bacteria | RF00001 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MAI-tripeptidyl-tRNA analog ACCA-IAM at 2.45A resolution | X-ray diffraction | 2.45 | 2022-01-26 |
| 5 | 7RQE|1|1B | 5S ribosomal RNA | 5S Ribosomal RNA | Thermus thermophilus HB8 | Bacteria | RF00001 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MAI-tripeptidyl-tRNA analog ACCA-IAM, and chloramphenicol at 2.40A resolution | X-ray diffraction | 2.4 | 2022-01-26 |
| 6 | 7RQ8|1|1B | 5S ribosomal RNA | 5S Ribosomal RNA | Thermus thermophilus HB8 | Bacteria | RF00001 | Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.50A resolution | X-ray diffraction | 2.5 | 2021-10-13 |
| 7 | 7RQC|1|1B | 5S ribosomal RNA | 5S Ribosomal RNA | Thermus thermophilus HB8 | Bacteria | RF00001 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MFI-tripeptidyl-tRNA analog ACCA-IFM at 2.50A resolution | X-ray diffraction | 2.5 | 2022-01-26 |
| 8 | 6XHW|1|1B | 5S ribosomal RNA | 5S Ribosomal RNA | Thermus thermophilus HB8 | Bacteria | RF00001 | Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.50A resolution | X-ray diffraction | 2.5 | 2020-12-23 |
| 9 | 7RQE|1|2B | 5S ribosomal RNA | 5S Ribosomal RNA | Thermus thermophilus HB8 | Bacteria | RF00001 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MAI-tripeptidyl-tRNA analog ACCA-IAM, and chloramphenicol at 2.40A resolution | X-ray diffraction | 2.4 | 2022-01-26 |
| 10 | 6XHV|1|1B | 5S ribosomal RNA | 5S Ribosomal RNA | Thermus thermophilus HB8 | Bacteria | RF00001 | Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.40A resolution | X-ray diffraction | 2.4 | 2020-12-23 |
| 11 | 7RQD|1|1B | 5S ribosomal RNA | 5S Ribosomal RNA | Thermus thermophilus HB8 | Bacteria | RF00001 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MTI-tripeptidyl-tRNA analog ACCA-ITM, and chloramphenicol at 2.50A resolution | X-ray diffraction | 2.5 | 2022-01-26 |
| 12 | 7RQC|1|2B | 5S ribosomal RNA | 5S Ribosomal RNA | Thermus thermophilus HB8 | Bacteria | RF00001 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MFI-tripeptidyl-tRNA analog ACCA-IFM at 2.50A resolution | X-ray diffraction | 2.5 | 2022-01-26 |
| 13 | 7RQA|1|1B | 5S ribosomal RNA | 5S Ribosomal RNA | Thermus thermophilus HB8 | Bacteria | RF00001 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.40A resolution | X-ray diffraction | 2.4 | 2022-01-26 |
| 14 | 6XHV|1|2B | 5S ribosomal RNA | 5S Ribosomal RNA | Thermus thermophilus HB8 | Bacteria | RF00001 | Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.40A resolution | X-ray diffraction | 2.4 | 2020-12-23 |
| 15 | 4W2F|1|BB | 5S ribosomal RNA | 5S Ribosomal RNA | Thermus thermophilus | Bacteria | RF00001 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.4 | 2014-10-15 |
| 16 | 7RQD|1|2B | 5S ribosomal RNA | 5S Ribosomal RNA | Thermus thermophilus HB8 | Bacteria | RF00001 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MTI-tripeptidyl-tRNA analog ACCA-ITM, and chloramphenicol at 2.50A resolution | X-ray diffraction | 2.5 | 2022-01-26 |
| 17 | 6XHW|1|2B | 5S ribosomal RNA | 5S Ribosomal RNA | Thermus thermophilus HB8 | Bacteria | RF00001 | Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.50A resolution | X-ray diffraction | 2.5 | 2020-12-23 |
| 18 | 4Y4P|1|1B | 5S ribosomal RNA | 5S Ribosomal RNA | Thermus thermophilus | Bacteria | RF00001 | Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution | X-ray diffraction | 2.5 | 2015-03-18 |
| 19 | 7RQ8|1|2B | 5S ribosomal RNA | 5S Ribosomal RNA | Thermus thermophilus HB8 | Bacteria | RF00001 | Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.50A resolution | X-ray diffraction | 2.5 | 2021-10-13 |
| 20 | 7RQA|1|2B | 5S ribosomal RNA | 5S Ribosomal RNA | Thermus thermophilus HB8 | Bacteria | RF00001 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.40A resolution | X-ray diffraction | 2.4 | 2022-01-26 |
| 21 | 4W2F|1|DB | 5S ribosomal RNA | 5S Ribosomal RNA | Thermus thermophilus | Bacteria | RF00001 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.4 | 2014-10-15 |
| 22 | 4Y4P|1|2B | 5S ribosomal RNA | 5S Ribosomal RNA | Thermus thermophilus | Bacteria | RF00001 | Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution | X-ray diffraction | 2.5 | 2015-03-18 |
Release history
| Release | 3.233 |
|---|---|
| Date | 2022-06-01 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_2.5_42622.58 | NR_2.5_42622.57 | 3.233 | (22) 4W2F|1|BB, 4W2F|1|DB, 4Y4O|1|1B, 4Y4O|1|2B, 4Y4P|1|1B, 4Y4P|1|2B, 6XHV|1|1B, 6XHV|1|2B, 6XHW|1|1B, 6XHW|1|2B, 7RQ8|1|1B, 7RQ8|1|2B, 7RQA|1|1B, 7RQA|1|2B, 7RQB|1|1B, 7RQB|1|2B, 7RQC|1|1B, 7RQC|1|2B, 7RQD|1|1B, 7RQD|1|2B, 7RQE|1|1B, 7RQE|1|2B | (0) | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_2.5_42622.58 | NR_2.5_42622.59 | 3.234 | (22) 4W2F|1|BB, 4W2F|1|DB, 4Y4O|1|1B, 4Y4O|1|2B, 4Y4P|1|1B, 4Y4P|1|2B, 6XHV|1|1B, 6XHV|1|2B, 6XHW|1|1B, 6XHW|1|2B, 7RQ8|1|1B, 7RQ8|1|2B, 7RQA|1|1B, 7RQA|1|2B, 7RQB|1|1B, 7RQB|1|2B, 7RQC|1|1B, 7RQC|1|2B, 7RQD|1|1B, 7RQD|1|2B, 7RQE|1|1B, 7RQE|1|2B | (0) | (0) |
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 6XHV|1|1B | Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.40A resolution | X-RAY DIFFRACTION | 2.4 | 120 | |
| 2 | 4W2F|1|BB | Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites | X-RAY DIFFRACTION | 2.4 | 120 | |
| 3 | 4Y4P|1|1B | Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution | X-RAY DIFFRACTION | 2.5 | 120 | |
| 4 | 6XHW|1|1B | Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.50A resolution | X-RAY DIFFRACTION | 2.5 | 120 | |
| 5 | 7RQ8|1|1B | Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.50A resolution | X-RAY DIFFRACTION | 2.5 | 120 | |
| 6 | 7RQC|1|1B | Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MFI-tripeptidyl-tRNA analog ACCA-IFM at 2.50A resolution | X-RAY DIFFRACTION | 2.5 | 120 | |
| 7 | 7RQE|1|1B | Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MAI-tripeptidyl-tRNA analog ACCA-IAM, and chloramphenicol at 2.40A resolution | X-RAY DIFFRACTION | 2.4 | 120 | |
| 8 | 7RQD|1|1B | Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MTI-tripeptidyl-tRNA analog ACCA-ITM, and chloramphenicol at 2.50A resolution | X-RAY DIFFRACTION | 2.5 | 120 | |
| 9 | 7RQB|1|1B | Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MAI-tripeptidyl-tRNA analog ACCA-IAM at 2.45A resolution | X-RAY DIFFRACTION | 2.45 | 120 | |
| 10 | 4Y4O|1|1B | Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution | X-RAY DIFFRACTION | 2.3 | 120 | |
| 11 | 7RQA|1|1B | Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.40A resolution | X-RAY DIFFRACTION | 2.4 | 120 | |
| 12 | 4Y4O|1|2B | Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution | X-RAY DIFFRACTION | 2.3 | 120 | |
| 13 | 7RQB|1|2B | Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MAI-tripeptidyl-tRNA analog ACCA-IAM at 2.45A resolution | X-RAY DIFFRACTION | 2.45 | 120 | |
| 14 | 7RQE|1|2B | Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MAI-tripeptidyl-tRNA analog ACCA-IAM, and chloramphenicol at 2.40A resolution | X-RAY DIFFRACTION | 2.4 | 120 | |
| 15 | 7RQD|1|2B | Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MTI-tripeptidyl-tRNA analog ACCA-ITM, and chloramphenicol at 2.50A resolution | X-RAY DIFFRACTION | 2.5 | 120 | |
| 16 | 7RQC|1|2B | Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MFI-tripeptidyl-tRNA analog ACCA-IFM at 2.50A resolution | X-RAY DIFFRACTION | 2.5 | 120 | |
| 17 | 7RQA|1|2B | Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.40A resolution | X-RAY DIFFRACTION | 2.4 | 120 | |
| 18 | 6XHV|1|2B | Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.40A resolution | X-RAY DIFFRACTION | 2.4 | 120 | |
| 19 | 4W2F|1|DB | Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites | X-RAY DIFFRACTION | 2.4 | 120 | |
| 20 | 6XHW|1|2B | Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.50A resolution | X-RAY DIFFRACTION | 2.5 | 120 | |
| 21 | 7RQ8|1|2B | Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.50A resolution | X-RAY DIFFRACTION | 2.5 | 120 | |
| 22 | 4Y4P|1|2B | Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution | X-RAY DIFFRACTION | 2.5 | 120 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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