#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
16N6F|1|D (rep)RNA (5'-R(P*GP*C)-3')synthetic constructVibrio cholerae Oligoribonuclease bound to pGCX-ray diffraction1.742019-06-12
24OHY|1|BRNA (5'-R(*GP*C)-3')C. Elegans Clp1 bound to ssRNA dinucleotide GC, AMP-PNP, and Mg2+(inhibited substrate bound state)X-ray diffraction22014-05-14
34OI1|1|BRNA (5'-R(*GP*C)-3')Clp1 bound to ssRNA dinucleotide GC, ADP, AlF4-, and Mg2+(transition state, data set II)X-ray diffraction2.32014-05-14
44OI0|1|BRNA (5'-R(*GP*C)-3')bound to ssRNA dinucleotide GC, ADP, AlF4-, and Mg2+(transition state, data set I)X-ray diffraction2.22014-05-14

Release history

Release3.923.933.943.953.963.973.983.993.1003.1013.1023.1033.1043.1053.1063.1073.1083.1093.1103.1113.1123.1133.1143.1153.1163.1173.1183.1193.1203.1213.1223.1233.1243.1253.1263.1273.1283.1293.1303.1313.1323.1333.1343.1353.1363.1373.1383.1393.1403.1413.1423.1433.1443.1453.1463.1473.1483.1493.1503.1513.1523.1533.1543.1553.1563.1573.1583.1593.1603.161
Date2019-09-192019-09-252019-10-032019-10-092019-10-162019-10-232019-10-302019-11-062019-11-132019-11-202019-11-272019-12-042019-12-112019-12-182019-12-252020-01-012020-01-082020-01-152020-01-222020-01-292020-02-052020-02-122020-02-192020-02-262020-03-042020-03-112020-03-182020-03-252020-04-012020-04-082020-04-152020-04-222020-04-292020-05-062020-05-132020-05-202020-05-272020-06-032020-06-102020-06-172020-06-242020-07-012020-07-082020-07-152020-07-222020-07-292020-08-052020-08-122020-08-192020-08-262020-09-022020-09-092020-09-162020-09-232020-09-302020-10-072020-10-142020-10-212020-10-282020-11-042020-11-112020-11-182020-11-252020-12-022020-12-092020-12-162020-12-232020-12-302021-01-062021-01-13

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_2.5_50478.4NR_2.5_50478.33.92(4) 4OHY|1|B, 4OI0|1|B, 4OI1|1|B, 6N6F|1|D(0) (0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_2.5_50478.4NR_2.5_50478.53.162(4) 4OHY|1|B, 4OI0|1|B, 4OI1|1|B, 6N6F|1|D(0) (0)

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLength
14OHY|1|BC. Elegans Clp1 bound to ssRNA dinucleotide GC, AMP-PNP, and Mg2+(inhibited substrate bound state)X-RAY DIFFRACTION22
24OI1|1|BClp1 bound to ssRNA dinucleotide GC, ADP, AlF4-, and Mg2+(transition state, data set II)X-RAY DIFFRACTION2.32
34OI0|1|Bbound to ssRNA dinucleotide GC, ADP, AlF4-, and Mg2+(transition state, data set I)X-RAY DIFFRACTION2.22
46N6F|1|DVibrio cholerae Oligoribonuclease bound to pGCX-RAY DIFFRACTION1.743

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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