#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
13C3Z|1|A+ 3C3Z|1|B (rep)HIV-1 subtype F genomic RNACrystal structure of HIV-1 subtype F DIS extended duplex RNA bound to ribostamycinX-ray diffraction1.52008-05-06
21Y99|1|A+ 1Y99|1|B5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*GP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G)-3'HIV-1 subtype A DIS RNA duplexX-ray diffraction2.42004-12-21
31NLC|1|B+ 1NLC|1|AHIV-1 DIS(MAL) genomic RNAHIV-1 DIS(Mal) duplex Zn-soakedX-ray diffraction1.852003-05-13
4462D|1|B+ 462D|1|ARNA (5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*GP*GP*UP*GP*CP*AP*CP*AP*CP*AP*GP*CP*AP*AP*G) -3')CRYSTAL STRUCTURE OF THE HIV-1 GENOMIC RNA DIMERIZATION INITIATION SITEX-ray diffraction2.31999-12-02
52OIJ|1|A+ 2OIJ|1|B5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*AP*GP*CP*GP*CP*GP*CP*AP*CP*GP*GP*CP*AP*AP*G)-3'HIV-1 subtype B DIS RNA extended duplex AuCl3 soakedX-ray diffraction2.312007-02-13
62QEK|1|A+ 2QEK|1|BHIV-1 subtype F DIS genomic RNAHIV-1 subtype F DIS RNA extended duplex formX-ray diffraction1.82008-05-06
73FAR|1|A+ 3FAR|1|BRNA (5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*AP*GP*CP*GP*CP*GP*CP*AP*CP*GP*GP*CP*AP*AP*G)-3')Cation-dependent self-cleavage activity in the duplex form of the subtype-B HIV-1 RNA Dimerization Initiation SiteX-ray diffraction2.42009-11-24
82OIY|1|A+ 2OIY|1|B5'-R(*CP*UP*UP*GP*CP*UP*GP*AP*AP*GP*CP*GP*CP*GP*CP*AP*CP*GP*GP*CP*AP*AP*G)-3'Crystal structure of the duplex form of the HIV-1(LAI) RNA dimerization initiation siteX-ray diffraction1.62007-12-25
93C44|1|A+ 3C44|1|BHIV-1 subtype F genomic RNACrystal structure of HIV-1 subtype F DIS extended duplex RNA bound to paromomycinX-ray diffraction22008-05-06
103DVV|1|A+ 3DVV|1|BHIV-1 genomic RNACrystal structure of HIV-1 subtype F DIS extended duplex RNA bound to ribostamycin (U267OMe)X-ray diffraction22008-08-12
113C7R|1|A+ 3C7R|1|BHIV-1 subtype F genomic RNACrystal Structure of HIV-1 subtype F DIS extended duplex RNA bound to neomycinX-ray diffraction1.72008-05-06
123C5D|1|A+ 3C5D|1|B'HIV-1 subtype F genomic RNACrystal structure of HIV-1 subtype F DIS extended duplex RNA bound to lividomycinX-ray diffraction1.82008-05-06

Release history

Release2.1242.1252.1262.1272.1282.1292.1302.131
Date2017-04-262017-04-292017-05-092017-05-152017-05-202017-05-272017-06-072017-06-11

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLength
13DVV|1|A+ 3DVV|1|BCrystal structure of HIV-1 subtype F DIS extended duplex RNA bound to ribostamycin (U267OMe)X-RAY DIFFRACTION222
23C3Z|1|A+ 3C3Z|1|BCrystal structure of HIV-1 subtype F DIS extended duplex RNA bound to ribostamycinX-RAY DIFFRACTION1.522
33C7R|1|A+ 3C7R|1|BCrystal Structure of HIV-1 subtype F DIS extended duplex RNA bound to neomycinX-RAY DIFFRACTION1.722
43C5D|1|A+ 3C5D|1|BCrystal structure of HIV-1 subtype F DIS extended duplex RNA bound to lividomycinX-RAY DIFFRACTION1.822
53C44|1|A+ 3C44|1|BCrystal structure of HIV-1 subtype F DIS extended duplex RNA bound to paromomycinX-RAY DIFFRACTION223
63FAR|1|A+ 3FAR|1|BCation-dependent self-cleavage activity in the duplex form of the subtype-B HIV-1 RNA Dimerization Initiation SiteX-RAY DIFFRACTION2.423
72OIY|1|A+ 2OIY|1|BCrystal structure of the duplex form of the HIV-1(LAI) RNA dimerization initiation siteX-RAY DIFFRACTION1.623
82OIJ|1|A+ 2OIJ|1|BHIV-1 subtype B DIS RNA extended duplex AuCl3 soakedX-RAY DIFFRACTION2.3123
91Y99|1|A+ 1Y99|1|BHIV-1 subtype A DIS RNA duplexX-RAY DIFFRACTION2.426
10462D|1|B+ 462D|1|ACRYSTAL STRUCTURE OF THE HIV-1 GENOMIC RNA DIMERIZATION INITIATION SITEX-RAY DIFFRACTION2.326
111NLC|1|B+ 1NLC|1|AHIV-1 DIS(Mal) duplex Zn-soakedX-RAY DIFFRACTION1.8526
122QEK|1|A+ 2QEK|1|BHIV-1 subtype F DIS RNA extended duplex formX-RAY DIFFRACTION1.823

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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