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Equivalence class NR_2.5_65795.19 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
12VQE|1|A (rep)Small subunit ribosomal RNA16S RRNAThermus thermophilusBacteriaRF00177Modified uridines with C5-methylene substituents at the first position of the tRNA anticodon stabilize U-G wobble pairing during decodingX-ray diffraction2.52008-04-29
24Y4O|1|1aSmall subunit ribosomal RNA16S Ribosomal RNAThermus thermophilusBacteriaRF00177Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolutionX-ray diffraction2.32015-03-18
34Y4O|1|2aSmall subunit ribosomal RNA16S Ribosomal RNAThermus thermophilusBacteriaRF00177Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolutionX-ray diffraction2.32015-03-18
44W2F|1|AASmall subunit ribosomal RNA16S Ribosomal RNAThermus thermophilusBacteriaRF00177Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-ray diffraction2.42014-10-15
54W2F|1|CASmall subunit ribosomal RNA16S Ribosomal RNAThermus thermophilusBacteriaRF00177Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-ray diffraction2.42014-10-15
64Y4P|1|1aSmall subunit ribosomal RNA16S Ribosomal RNAThermus thermophilusBacteriaRF00177Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolutionX-ray diffraction2.52015-03-18
74Y4P|1|2aSmall subunit ribosomal RNA16S Ribosomal RNAThermus thermophilusBacteriaRF00177Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolutionX-ray diffraction2.52015-03-18

Release history

Release2.76
Date2016-05-20

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_2.5_65795.19NR_all_65795.182.76(7) 2VQE|1|A, 4W2F|1|AA, 4W2F|1|CA, 4Y4O|1|1a, 4Y4O|1|2a, 4Y4P|1|1a, 4Y4P|1|2a(0) (360) 1FJG|1|A, 1FKA|1|A, 1HNW|1|A, 1HNX|1|A, 1HNZ|1|A, 1HR0|1|A, 1I94|1|A, 1I95|1|A, 1I96|1|A, 1I97|1|A, 1IBK|1|A, 1IBL|1|A, 1IBM|1|A, 1J5E|1|A, 1JGO|1|A, 1JGP|1|A, 1JGQ|1|A, 1N32|1|A, 1N33|1|A, 1N34|1|A, 1N36|1|A, 1VVJ|1|QA, 1VVJ|1|XA, 1VY4|1|AA, 1VY4|1|CA, 1VY5|1|AA, 1VY5|1|CA, 1VY6|1|AA, 1VY6|1|CA, 1VY7|1|AA, 1VY7|1|CA, 1XMO|1|A, 1XMQ|1|A, 1XNQ|1|A, 1XNR|1|A, 2E5L|1|A, 2F4V|1|A, 2HHH|1|A, 2UU9|1|A, 2UUA|1|A, 2UUB|1|A, 2UUC|1|A, 2UXB|1|A, 2UXC|1|A, 2UXD|1|A, 2VQF|1|A, 2ZM6|1|A, 3OTO|1|A, 3T1H|1|A, 3T1Y|1|A, 4AQY|1|A, 4B3M|1|A, 4B3R|1|A, 4B3S|1|A, 4B3T|1|A, 4DR1|1|A, 4DR2|1|A, 4DR3|1|A, 4DR4|1|A, 4DR5|1|A, 4DR6|1|A, 4DR7|1|A, 4DUY|1|A, 4DUZ|1|A, 4DV0|1|A, 4DV1|1|A, 4DV2|1|A, 4DV3|1|A, 4DV4|1|A, 4DV5|1|A, 4DV6|1|A, 4DV7|1|A, 4GKJ|1|A, 4GKK|1|A, 4JI0|1|A, 4JI1|1|A, 4JI2|1|A, 4JI3|1|A, 4JI4|1|A, 4JI5|1|A, 4JI6|1|A, 4JI7|1|A, 4JI8|1|A, 4JV5|1|A, 4JYA|1|A, 4K0K|1|A, 4KHP|1|A, 4KVB|1|A, 4L47|1|QA, 4L47|1|XA, 4L71|1|QA, 4L71|1|XA, 4LEL|1|QA, 4LEL|1|XA, 4LF4|1|A, 4LF5|1|A, 4LF6|1|A, 4LF7|1|A, 4LF8|1|A, 4LF9|1|A, 4LFA|1|A, 4LFB|1|A, 4LFC|1|A, 4LFZ|1|QA, 4LFZ|1|XA, 4LNT|1|QA, 4LNT|1|XA, 4LSK|1|QA, 4LSK|1|XA, 4LT8|1|QA, 4LT8|1|XA, 4NXM|1|A, 4NXN|1|A, 4OX9|1|A, 4P6F|1|QA, 4P6F|1|XA, 4P70|1|QA, 4P70|1|XA, 4TUA|1|QA, 4TUA|1|XA, 4TUB|1|QA, 4TUB|1|XA, 4TUC|1|QA, 4TUC|1|XA, 4TUD|1|QA, 4TUD|1|XA, 4TUE|1|QA, 4TUE|1|XA, 4V42|1|AA, 4V4I|1|y, 4V4J|1|y, 4V4P|1|BA+4V4P|1|B1, 4V4R|1|AA, 4V4S|1|AA, 4V4T|1|AA, 4V4X|1|AA, 4V4Y|1|AA, 4V4Z|1|AA, 4V51|1|AA, 4V51|1|CA, 4V5A|1|AA, 4V5A|1|CA, 4V5C|1|AA, 4V5C|1|CA, 4V5D|1|AA, 4V5D|1|CA, 4V5E|1|AA, 4V5E|1|CA, 4V5F|1|AA, 4V5F|1|CA, 4V5G|1|AA, 4V5G|1|CA, 4V5J|1|AA, 4V5J|1|CA, 4V5K|1|AA, 4V5K|1|CA, 4V5L|1|AA, 4V5M|1|AA, 4V5N|1|AA, 4V5P|1|AA, 4V5P|1|CA, 4V5Q|1|AA, 4V5Q|1|CA, 4V5R|1|AA, 4V5R|1|CA, 4V5S|1|AA, 4V5S|1|CA, 4V63|1|AA, 4V63|1|CA, 4V67|1|AA, 4V67|1|CA, 4V68|1|AA, 4V6A|1|AA, 4V6A|1|CA, 4V6F|1|BA, 4V6F|1|CA, 4V6G|1|AA, 4V6G|1|CA, 4V7J|1|Aa, 4V7J|1|Ba, 4V7K|1|Aa, 4V7K|1|Ba, 4V7L|1|AA, 4V7L|1|CA, 4V7M|1|AA, 4V7M|1|CA, 4V7P|1|AA, 4V7P|1|DA, 4V7W|1|AA, 4V7W|1|CA, 4V7X|1|AA, 4V7X|1|CA, 4V7Y|1|AA, 4V7Y|1|CA, 4V7Z|1|AA, 4V7Z|1|CA, 4V83|1|AA, 4V83|1|CA, 4V84|1|AA, 4V84|1|CA, 4V87|1|BA, 4V87|1|CA, 4V8A|1|CA, 4V8A|1|DA, 4V8B|1|AA, 4V8B|1|CA, 4V8C|1|CA, 4V8C|1|DA, 4V8D|1|AA, 4V8D|1|CA, 4V8E|1|BA, 4V8E|1|DA, 4V8F|1|BA, 4V8F|1|CA, 4V8G|1|AA, 4V8G|1|CA, 4V8H|1|AA, 4V8H|1|CA, 4V8I|1|AA, 4V8I|1|CA, 4V8J|1|AA, 4V8J|1|CA, 4V8N|1|AA, 4V8N|1|CA, 4V8O|1|AA, 4V8Q|1|BA, 4V8U|1|AA, 4V8U|1|CA, 4V8X|1|AA, 4V8X|1|CA, 4V90|1|AA, 4V95|1|AA, 4V95|1|CA, 4V97|1|AA, 4V97|1|CA, 4V9A|1|AA, 4V9A|1|CA, 4V9B|1|AA, 4V9B|1|CA, 4V9H|1|AA, 4V9I|1|AA, 4V9I|1|CA, 4V9J|1|AA, 4V9J|1|CA, 4V9K|1|AA, 4V9K|1|CA, 4V9L|1|AA, 4V9L|1|CA, 4V9M|1|AA, 4V9M|1|CA, 4V9N|1|AA, 4V9N|1|CA, 4V9Q|1|BA, 4V9Q|1|DA, 4V9R|1|AA, 4V9R|1|CA, 4V9S|1|AA, 4V9S|1|CA, 4W29|1|AA, 4W29|1|CA, 4W2E|1|a, 4W2G|1|AA, 4W2G|1|CA, 4W2H|1|AA, 4W2H|1|CA, 4W2I|1|AA, 4W2I|1|CA, 4W4G|1|QA, 4W4G|1|XA, 4WPO|1|BA, 4WPO|1|DA, 4WQ1|1|13, 4WQ1|1|1G, 4WQF|1|BA, 4WQF|1|DA, 4WQR|1|13, 4WQR|1|1G, 4WQU|1|BA, 4WQU|1|DA, 4WQY|1|BA, 4WQY|1|DA, 4WR6|1|13, 4WR6|1|1G, 4WRA|1|13, 4WRA|1|1G, 4WRO|1|13, 4WRO|1|1G, 4WSD|1|13, 4WSD|1|1G, 4WSM|1|13, 4WSM|1|1G, 4WT1|1|13, 4WT1|1|1G, 4WT8|1|Ab, 4WT8|1|Bb, 4WU1|1|13, 4WU1|1|1G, 4WZD|1|13, 4WZD|1|1G, 4WZO|1|13, 4WZO|1|1G, 4X62|1|A, 4X64|1|A, 4X65|1|A, 4X66|1|A, 4XEJ|1|A16S, 4XEJ|1|B16S, 4YHH|1|A, 4YPB|1|QA, 4YPB|1|XA, 4YZV|1|QA, 4YZV|1|XA, 4Z3S|1|1a, 4Z3S|1|2a, 4Z8C|1|1a, 4Z8C|1|2a, 4ZER|1|1a, 4ZER|1|2a, 5A9Z|1|BA, 5AA0|1|BA, 5BR8|1|A, 5D8B|1|UC, 5D8B|1|YC, 5DOX|1|1a, 5DOX|1|2a, 5DOY|1|1a, 5DOY|1|2a, 5E7K|1|13, 5E7K|1|1G, 5E81|1|13, 5E81|1|1G, 5EL4|1|13, 5EL4|1|1G, 5EL5|1|13, 5EL5|1|1G, 5EL6|1|13, 5EL6|1|1G, 5EL7|1|13, 5EL7|1|1G, 5F8K|1|1a, 5F8K|1|2a, 5FDU|1|1a, 5FDU|1|2a, 5FDV|1|1a, 5FDV|1|2a, 5HAU|1|1a, 5HAU|1|2a, 5HCP|1|1a, 5HCP|1|2a, 5HCQ|1|1a, 5HCQ|1|2a, 5HCR|1|1a, 5HCR|1|2a, 5HD1|1|1a, 5HD1|1|2a, 5IWA|1|A, 5J4B|1|1a, 5J4B|1|2a, 5J4C|1|1a, 5J4C|1|2a

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLength
14Y4O|1|1aCrystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolutionX-RAY DIFFRACTION2.31488
24Y4P|1|1aCrystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolutionX-RAY DIFFRACTION2.51488
34W2F|1|AACrystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.41497
44W2F|1|CACrystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.41503
54Y4P|1|2aCrystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolutionX-RAY DIFFRACTION2.51491
64Y4O|1|2aCrystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolutionX-RAY DIFFRACTION2.31492
72VQE|1|AModified uridines with C5-methylene substituents at the first position of the tRNA anticodon stabilize U-G wobble pairing during decodingX-RAY DIFFRACTION2.51513

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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