#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
14Y4O|1|1a (rep)Small subunit ribosomal RNA16S Ribosomal RNAThermus thermophilusBacteriaRF00177Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolutionX-ray diffraction2.32015-03-18
24Y4O|1|2aSmall subunit ribosomal RNA16S Ribosomal RNAThermus thermophilusBacteriaRF00177Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolutionX-ray diffraction2.32015-03-18
36XHW|1|1aSmall subunit ribosomal RNA16S Ribosomal RNAThermus thermophilus HB8BacteriaRF00177Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.50A resolutionX-ray diffraction2.52020-12-23
46XHV|1|1aSmall subunit ribosomal RNA16S Ribosomal RNAThermus thermophilus HB8BacteriaRF00177Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.40A resolutionX-ray diffraction2.42020-12-23
56XHV|1|2aSmall subunit ribosomal RNA16S Ribosomal RNAThermus thermophilus HB8BacteriaRF00177Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.40A resolutionX-ray diffraction2.42020-12-23
66XHW|1|2aSmall subunit ribosomal RNA16S Ribosomal RNAThermus thermophilus HB8BacteriaRF00177Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.50A resolutionX-ray diffraction2.52020-12-23
74Y4P|1|1aSmall subunit ribosomal RNA16S Ribosomal RNAThermus thermophilusBacteriaRF00177Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolutionX-ray diffraction2.52015-03-18
84W2F|1|AASmall subunit ribosomal RNA16S Ribosomal RNAThermus thermophilusBacteriaRF00177Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-ray diffraction2.42014-10-15
94W2F|1|CASmall subunit ribosomal RNA16S Ribosomal RNAThermus thermophilusBacteriaRF00177Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-ray diffraction2.42014-10-15
104Y4P|1|2aSmall subunit ribosomal RNA16S Ribosomal RNAThermus thermophilusBacteriaRF00177Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolutionX-ray diffraction2.52015-03-18

Release history

Release3.1753.1763.1773.1783.1793.180
Date2021-04-212021-04-282021-05-052021-05-122021-05-192021-05-26

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_2.5_65795.59NR_2.5_65795.583.175(10) 4W2F|1|AA, 4W2F|1|CA, 4Y4O|1|1a, 4Y4O|1|2a, 4Y4P|1|1a, 4Y4P|1|2a, 6XHV|1|1a, 6XHV|1|2a, 6XHW|1|1a, 6XHW|1|2a(0) (0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_2.5_65795.59NR_2.5_65795.603.181(10) 4W2F|1|AA, 4W2F|1|CA, 4Y4O|1|1a, 4Y4O|1|2a, 4Y4P|1|1a, 4Y4P|1|2a, 6XHV|1|1a, 6XHV|1|2a, 6XHW|1|1a, 6XHW|1|2a(0) (0)

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLength
16XHW|1|1aCrystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.50A resolutionX-RAY DIFFRACTION2.51488
24Y4P|1|1aCrystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolutionX-RAY DIFFRACTION2.51488
34W2F|1|AACrystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.41497
44Y4O|1|1aCrystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolutionX-RAY DIFFRACTION2.31488
56XHV|1|1aCrystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.40A resolutionX-RAY DIFFRACTION2.41488
66XHV|1|2aCrystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.40A resolutionX-RAY DIFFRACTION2.41491
74W2F|1|CACrystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.41503
86XHW|1|2aCrystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.50A resolutionX-RAY DIFFRACTION2.51491
94Y4P|1|2aCrystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolutionX-RAY DIFFRACTION2.51491
104Y4O|1|2aCrystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolutionX-RAY DIFFRACTION2.31492

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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