#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
14Y4O|1|1a (rep)Small subunit ribosomal RNA16S Ribosomal RNAThermus thermophilusBacteriaRF00177Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolutionX-ray diffraction2.32015-03-18
27RQB|1|1aSmall subunit ribosomal RNA16S Ribosomal RNAThermus thermophilus HB8BacteriaRF00177Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MAI-tripeptidyl-tRNA analog ACCA-IAM at 2.45A resolutionX-ray diffraction2.452022-01-26
34Y4O|1|2aSmall subunit ribosomal RNA16S Ribosomal RNAThermus thermophilusBacteriaRF00177Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolutionX-ray diffraction2.32015-03-18
47RQB|1|2aSmall subunit ribosomal RNA16S Ribosomal RNAThermus thermophilus HB8BacteriaRF00177Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MAI-tripeptidyl-tRNA analog ACCA-IAM at 2.45A resolutionX-ray diffraction2.452022-01-26
57RQE|1|1aSmall subunit ribosomal RNA16S Ribosomal RNAThermus thermophilus HB8BacteriaRF00177Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MAI-tripeptidyl-tRNA analog ACCA-IAM, and chloramphenicol at 2.40A resolutionX-ray diffraction2.42022-01-26
67RQ8|1|1aSmall subunit ribosomal RNA16S Ribosomal RNAThermus thermophilus HB8BacteriaRF00177Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.50A resolutionX-ray diffraction2.52021-10-13
77RQE|1|2aSmall subunit ribosomal RNA16S Ribosomal RNAThermus thermophilus HB8BacteriaRF00177Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MAI-tripeptidyl-tRNA analog ACCA-IAM, and chloramphenicol at 2.40A resolutionX-ray diffraction2.42022-01-26
87RQC|1|1aSmall subunit ribosomal RNA16S Ribosomal RNAThermus thermophilus HB8BacteriaRF00177Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MFI-tripeptidyl-tRNA analog ACCA-IFM at 2.50A resolutionX-ray diffraction2.52022-01-26
96XHW|1|1aSmall subunit ribosomal RNA16S Ribosomal RNAThermus thermophilus HB8BacteriaRF00177Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.50A resolutionX-ray diffraction2.52020-12-23
107RQC|1|2aSmall subunit ribosomal RNA16S Ribosomal RNAThermus thermophilus HB8BacteriaRF00177Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MFI-tripeptidyl-tRNA analog ACCA-IFM at 2.50A resolutionX-ray diffraction2.52022-01-26
116XHV|1|1aSmall subunit ribosomal RNA16S Ribosomal RNAThermus thermophilus HB8BacteriaRF00177Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.40A resolutionX-ray diffraction2.42020-12-23
127RQ8|1|2aSmall subunit ribosomal RNA16S Ribosomal RNAThermus thermophilus HB8BacteriaRF00177Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.50A resolutionX-ray diffraction2.52021-10-13
137RQD|1|1aSmall subunit ribosomal RNA16S Ribosomal RNAThermus thermophilus HB8BacteriaRF00177Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MTI-tripeptidyl-tRNA analog ACCA-ITM, and chloramphenicol at 2.50A resolutionX-ray diffraction2.52022-01-26
146XHV|1|2aSmall subunit ribosomal RNA16S Ribosomal RNAThermus thermophilus HB8BacteriaRF00177Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.40A resolutionX-ray diffraction2.42020-12-23
156XHW|1|2aSmall subunit ribosomal RNA16S Ribosomal RNAThermus thermophilus HB8BacteriaRF00177Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.50A resolutionX-ray diffraction2.52020-12-23
167RQD|1|2aSmall subunit ribosomal RNA16S Ribosomal RNAThermus thermophilus HB8BacteriaRF00177Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MTI-tripeptidyl-tRNA analog ACCA-ITM, and chloramphenicol at 2.50A resolutionX-ray diffraction2.52022-01-26
174Y4P|1|1aSmall subunit ribosomal RNA16S Ribosomal RNAThermus thermophilusBacteriaRF00177Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolutionX-ray diffraction2.52015-03-18
184W2F|1|AASmall subunit ribosomal RNA16S Ribosomal RNAThermus thermophilusBacteriaRF00177Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-ray diffraction2.42014-10-15
197RQA|1|1aSmall subunit ribosomal RNA16S Ribosomal RNAThermus thermophilus HB8BacteriaRF00177Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.40A resolutionX-ray diffraction2.42022-01-26
207RQA|1|2aSmall subunit ribosomal RNA16S Ribosomal RNAThermus thermophilus HB8BacteriaRF00177Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.40A resolutionX-ray diffraction2.42022-01-26
214W2F|1|CASmall subunit ribosomal RNA16S Ribosomal RNAThermus thermophilusBacteriaRF00177Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-ray diffraction2.42014-10-15
224Y4P|1|2aSmall subunit ribosomal RNA16S Ribosomal RNAThermus thermophilusBacteriaRF00177Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolutionX-ray diffraction2.52015-03-18

Release history

Release3.2253.2263.2273.2283.2293.2303.2313.232
Date2022-04-062022-04-132022-04-202022-04-272022-05-042022-05-112022-05-182022-05-25

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLength
17RQA|1|1aCrystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.40A resolutionX-RAY DIFFRACTION2.41488
24Y4O|1|1aCrystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolutionX-RAY DIFFRACTION2.31488
37RQB|1|1aCrystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MAI-tripeptidyl-tRNA analog ACCA-IAM at 2.45A resolutionX-RAY DIFFRACTION2.451488
47RQE|1|1aCrystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MAI-tripeptidyl-tRNA analog ACCA-IAM, and chloramphenicol at 2.40A resolutionX-RAY DIFFRACTION2.41488
57RQD|1|1aCrystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MTI-tripeptidyl-tRNA analog ACCA-ITM, and chloramphenicol at 2.50A resolutionX-RAY DIFFRACTION2.51488
67RQC|1|1aCrystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MFI-tripeptidyl-tRNA analog ACCA-IFM at 2.50A resolutionX-RAY DIFFRACTION2.51488
76XHW|1|1aCrystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.50A resolutionX-RAY DIFFRACTION2.51488
87RQ8|1|1aCrystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.50A resolutionX-RAY DIFFRACTION2.51488
94Y4P|1|1aCrystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolutionX-RAY DIFFRACTION2.51488
104W2F|1|AACrystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.41497
116XHV|1|1aCrystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.40A resolutionX-RAY DIFFRACTION2.41488
126XHV|1|2aCrystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.40A resolutionX-RAY DIFFRACTION2.41491
134W2F|1|CACrystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.41503
146XHW|1|2aCrystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.50A resolutionX-RAY DIFFRACTION2.51491
157RQ8|1|2aCrystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.50A resolutionX-RAY DIFFRACTION2.51491
164Y4P|1|2aCrystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolutionX-RAY DIFFRACTION2.51491
177RQA|1|2aCrystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.40A resolutionX-RAY DIFFRACTION2.41492
184Y4O|1|2aCrystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolutionX-RAY DIFFRACTION2.31492
197RQB|1|2aCrystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MAI-tripeptidyl-tRNA analog ACCA-IAM at 2.45A resolutionX-RAY DIFFRACTION2.451492
207RQE|1|2aCrystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MAI-tripeptidyl-tRNA analog ACCA-IAM, and chloramphenicol at 2.40A resolutionX-RAY DIFFRACTION2.41492
217RQD|1|2aCrystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MTI-tripeptidyl-tRNA analog ACCA-ITM, and chloramphenicol at 2.50A resolutionX-RAY DIFFRACTION2.51492
227RQC|1|2aCrystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MFI-tripeptidyl-tRNA analog ACCA-IFM at 2.50A resolutionX-RAY DIFFRACTION2.51492

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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