NR_2.5_65795.69

Members (28)
History
Heat map

#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	Date
1	4Y4O\|1\|1a (rep)	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution	X-ray diffraction	2.3	2015-03-18
2	7RQB\|1\|1a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MAI-tripeptidyl-tRNA analog ACCA-IAM at 2.45A resolution	X-ray diffraction	2.45	2022-01-26
3	4Y4O\|1\|2a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution	X-ray diffraction	2.3	2015-03-18
4	7RQB\|1\|2a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MAI-tripeptidyl-tRNA analog ACCA-IAM at 2.45A resolution	X-ray diffraction	2.45	2022-01-26
5	7RQE\|1\|1a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MAI-tripeptidyl-tRNA analog ACCA-IAM, and chloramphenicol at 2.40A resolution	X-ray diffraction	2.4	2022-01-26
6	7RQ8\|1\|1a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF00177	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.50A resolution	X-ray diffraction	2.5	2021-10-13
7	7RQE\|1\|2a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MAI-tripeptidyl-tRNA analog ACCA-IAM, and chloramphenicol at 2.40A resolution	X-ray diffraction	2.4	2022-01-26
8	7RQC\|1\|1a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MFI-tripeptidyl-tRNA analog ACCA-IFM at 2.50A resolution	X-ray diffraction	2.5	2022-01-26
9	6XHW\|1\|1a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF00177	Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.50A resolution	X-ray diffraction	2.5	2020-12-23
10	7RQC\|1\|2a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MFI-tripeptidyl-tRNA analog ACCA-IFM at 2.50A resolution	X-ray diffraction	2.5	2022-01-26
11	6XHV\|1\|1a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF00177	Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.40A resolution	X-ray diffraction	2.4	2020-12-23
12	7RQ8\|1\|2a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF00177	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.50A resolution	X-ray diffraction	2.5	2021-10-13
13	8CVK\|1\|1a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution	X-ray diffraction	2.5	2022-10-19
14	7RQD\|1\|1a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MTI-tripeptidyl-tRNA analog ACCA-ITM, and chloramphenicol at 2.50A resolution	X-ray diffraction	2.5	2022-01-26
15	6XHV\|1\|2a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF00177	Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.40A resolution	X-ray diffraction	2.4	2020-12-23
16	6XHW\|1\|2a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF00177	Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.50A resolution	X-ray diffraction	2.5	2020-12-23
17	7RQD\|1\|2a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MTI-tripeptidyl-tRNA analog ACCA-ITM, and chloramphenicol at 2.50A resolution	X-ray diffraction	2.5	2022-01-26
18	4Y4P\|1\|1a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution	X-ray diffraction	2.5	2015-03-18
19	4W2F\|1\|AA	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites	X-ray diffraction	2.4	2014-10-15
20	8CVK\|1\|2a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution	X-ray diffraction	2.5	2022-10-19
21	8CVJ\|1\|1a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMSEAC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution	X-ray diffraction	2.4	2022-10-19
22	7RQA\|1\|1a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.40A resolution	X-ray diffraction	2.4	2022-01-26
23	7RQA\|1\|2a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.40A resolution	X-ray diffraction	2.4	2022-01-26
24	8CVL\|1\|1a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMTHSMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.30A resolution	X-ray diffraction	2.3	2022-10-19
25	4W2F\|1\|CA	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites	X-ray diffraction	2.4	2014-10-15
26	4Y4P\|1\|2a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution	X-ray diffraction	2.5	2015-03-18
27	8CVJ\|1\|2a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMSEAC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution	X-ray diffraction	2.4	2022-10-19
28	8CVL\|1\|2a	Small subunit ribosomal RNA	16S Ribosomal RNA	Thermus thermophilus HB8	Bacteria	RF00177	Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMTHSMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.30A resolution	X-ray diffraction	2.3	2022-10-19

Release history

Release	3.262	3.263	3.264	3.265	3.266	3.267	3.268	3.269	3.270	3.271	3.272	3.273	3.274	3.275
Date	2022-12-21	2022-12-28	2023-01-04	2023-01-11	2023-01-18	2023-01-25	2023-02-01	2023-02-08	2023-02-15	2023-02-22	2023-03-01	2023-03-08	2023-03-15	2023-03-22

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent
NR_2.5_65795.69	NR_2.5_65795.68	3.262	(28) 4W2F\|1\|AA, 4W2F\|1\|CA, 4Y4O\|1\|1a, 4Y4O\|1\|2a, 4Y4P\|1\|1a, 4Y4P\|1\|2a, 6XHV\|1\|1a, 6XHV\|1\|2a, 6XHW\|1\|1a, 6XHW\|1\|2a, 7RQ8\|1\|1a, 7RQ8\|1\|2a, 7RQA\|1\|1a, 7RQA\|1\|2a, 7RQB\|1\|1a, 7RQB\|1\|2a, 7RQC\|1\|1a, 7RQC\|1\|2a, 7RQD\|1\|1a, 7RQD\|1\|2a, 7RQE\|1\|1a, 7RQE\|1\|2a, 8CVJ\|1\|1a, 8CVJ\|1\|2a, 8CVK\|1\|1a, 8CVK\|1\|2a, 8CVL\|1\|1a, 8CVL\|1\|2a	(0)	(0)

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child
NR_2.5_65795.69	NR_2.5_65795.70	3.276	(28) 4W2F\|1\|AA, 4W2F\|1\|CA, 4Y4O\|1\|1a, 4Y4O\|1\|2a, 4Y4P\|1\|1a, 4Y4P\|1\|2a, 6XHV\|1\|1a, 6XHV\|1\|2a, 6XHW\|1\|1a, 6XHW\|1\|2a, 7RQ8\|1\|1a, 7RQ8\|1\|2a, 7RQA\|1\|1a, 7RQA\|1\|2a, 7RQB\|1\|1a, 7RQB\|1\|2a, 7RQC\|1\|1a, 7RQC\|1\|2a, 7RQD\|1\|1a, 7RQD\|1\|2a, 7RQE\|1\|1a, 7RQE\|1\|2a, 8CVJ\|1\|1a, 8CVJ\|1\|2a, 8CVK\|1\|1a, 8CVK\|1\|2a, 8CVL\|1\|1a, 8CVL\|1\|2a	(0)	(0)

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#S	PDB	Title	Method	Resolution	Length
1	7RQA\|1\|1a	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.40A resolution	X-RAY DIFFRACTION	2.4	1488
2	4Y4O\|1\|1a	Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution	X-RAY DIFFRACTION	2.3	1488
3	7RQB\|1\|1a	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MAI-tripeptidyl-tRNA analog ACCA-IAM at 2.45A resolution	X-RAY DIFFRACTION	2.45	1488
4	7RQE\|1\|1a	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MAI-tripeptidyl-tRNA analog ACCA-IAM, and chloramphenicol at 2.40A resolution	X-RAY DIFFRACTION	2.4	1488
5	7RQD\|1\|1a	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MTI-tripeptidyl-tRNA analog ACCA-ITM, and chloramphenicol at 2.50A resolution	X-RAY DIFFRACTION	2.5	1488
6	7RQC\|1\|1a	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MFI-tripeptidyl-tRNA analog ACCA-IFM at 2.50A resolution	X-RAY DIFFRACTION	2.5	1488
7	4W2F\|1\|AA	Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites	X-RAY DIFFRACTION	2.4	1497
8	4Y4P\|1\|1a	Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution	X-RAY DIFFRACTION	2.5	1488
9	7RQ8\|1\|1a	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.50A resolution	X-RAY DIFFRACTION	2.5	1488
10	6XHW\|1\|1a	Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.50A resolution	X-RAY DIFFRACTION	2.5	1488
11	8CVJ\|1\|1a	Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMSEAC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution	X-RAY DIFFRACTION	2.4	1488
12	8CVK\|1\|1a	Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution	X-RAY DIFFRACTION	2.5	1488
13	8CVL\|1\|1a	Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMTHSMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.30A resolution	X-RAY DIFFRACTION	2.3	1488
14	6XHV\|1\|1a	Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.40A resolution	X-RAY DIFFRACTION	2.4	1488
15	6XHV\|1\|2a	Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.40A resolution	X-RAY DIFFRACTION	2.4	1491
16	4W2F\|1\|CA	Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites	X-RAY DIFFRACTION	2.4	1503
17	8CVL\|1\|2a	Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMTHSMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.30A resolution	X-RAY DIFFRACTION	2.3	1491
18	6XHW\|1\|2a	Crystal structure of the A2058-unmethylated Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A- and P-site tRNAs, and deacylated E-site tRNA at 2.50A resolution	X-RAY DIFFRACTION	2.5	1491
19	8CVJ\|1\|2a	Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMSEAC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.40A resolution	X-RAY DIFFRACTION	2.4	1491
20	8CVK\|1\|2a	Crystal structure of the Thermus thermophilus 70S ribosome in complex with mRNA, aminoacylated A-site Phe-NH-tRNAphe, peptidyl P-site fMRC-NH-tRNAmet, and deacylated E-site tRNAphe at 2.50A resolution	X-RAY DIFFRACTION	2.5	1491
21	4Y4P\|1\|2a	Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution	X-RAY DIFFRACTION	2.5	1491
22	7RQ8\|1\|2a	Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.50A resolution	X-RAY DIFFRACTION	2.5	1491
23	7RQA\|1\|2a	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.40A resolution	X-RAY DIFFRACTION	2.4	1492
24	4Y4O\|1\|2a	Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to protein Y (YfiA) at 2.3A resolution	X-RAY DIFFRACTION	2.3	1492
25	7RQB\|1\|2a	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MAI-tripeptidyl-tRNA analog ACCA-IAM at 2.45A resolution	X-RAY DIFFRACTION	2.45	1492
26	7RQE\|1\|2a	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MAI-tripeptidyl-tRNA analog ACCA-IAM, and chloramphenicol at 2.40A resolution	X-RAY DIFFRACTION	2.4	1492
27	7RQD\|1\|2a	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MTI-tripeptidyl-tRNA analog ACCA-ITM, and chloramphenicol at 2.50A resolution	X-RAY DIFFRACTION	2.5	1492
28	7RQC\|1\|2a	Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MFI-tripeptidyl-tRNA analog ACCA-IFM at 2.50A resolution	X-RAY DIFFRACTION	2.5	1492

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.

Coloring options: Nucleotide numbers

Equivalence class NR_2.5_65795.69 Obsolete

Release history

Parents

Children