#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
13PF5|1|R (rep)hexaribouracil (rU6)Crystal structure of Bs-CspB in complex with rU6X-ray diffraction1.682011-09-21
23PEW|1|BRNA (5'-R(P*UP*UP*UP*UP*UP*U)-3')S. cerevisiae Dbp5 L327V bound to RNA and ADP BeF3X-ray diffraction1.52011-03-23
33PEY|1|BRNA (5'-R(P*UP*UP*UP*UP*UP*U)-3')S. cerevisiae Dbp5 bound to RNA and ADP BeF3X-ray diffraction1.42011-03-23
44ALP|1|EHEXA URIDINEsynthetic constructThe Lin28b Cold shock domain in complex with hexauridineX-ray diffraction1.482012-09-05
52HYI|1|F5'-R(*UP*UP*UP*UP*UP*U)-3'Structure of the human exon junction complex with a trapped DEAD-box helicase bound to RNAX-ray diffraction2.32006-08-15
63EX7|1|FRNA (5'-R(*UP*UP*UP*UP*UP*U)-3')The crystal structure of EJC in its transition stateX-ray diffraction2.32008-12-09
73EX7|1|JRNA (5'-R(*UP*UP*UP*UP*UP*U)-3')The crystal structure of EJC in its transition stateX-ray diffraction2.32008-12-09
82HYI|1|L5'-R(*UP*UP*UP*UP*UP*U)-3'Structure of the human exon junction complex with a trapped DEAD-box helicase bound to RNAX-ray diffraction2.32006-08-15
93O8R|1|CRNA (5'-R(P*UP*(5BU)P*UP*UP*UP*U)-3')Visualizing ATP-dependent RNA Translocation by the NS3 Helicase from HCVX-ray diffraction2.32011-01-05
103O8C|1|CRNA (5'-R(P*UP*(5BU)P*UP*UP*UP*U)-3')Visualizing ATP-dependent RNA Translocation by the NS3 Helicase from HCVX-ray diffraction22011-01-05
115BTE|1|CRNA (5'-R(P*UP*(U37)P*(U37)P*UP*UP*U)-3')Homo sapiensCrystal structure of Ashbya gossypii Rai1 in complex with pU(S)6-Mn2+X-ray diffraction2.42015-07-22
125BTE|1|DRNA (5'-R(P*UP*(U37)P*(U37)P*UP*UP*U)-3')Homo sapiensCrystal structure of Ashbya gossypii Rai1 in complex with pU(S)6-Mn2+X-ray diffraction2.42015-07-22
133PF5|1|Shexaribouracil (rU6)Crystal structure of Bs-CspB in complex with rU6X-ray diffraction1.682011-09-21

Release history

Release2.462.472.482.492.502.512.522.532.542.552.562.572.582.592.602.612.622.63
Date2015-10-232015-10-302015-11-062015-11-132015-11-202015-11-272015-12-042015-12-112015-12-182015-12-252016-01-012016-01-082016-01-152016-01-222016-01-292016-02-052016-02-122016-02-19

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLength
13PF5|1|RCrystal structure of Bs-CspB in complex with rU6X-RAY DIFFRACTION1.689
25BTE|1|DCrystal structure of Ashbya gossypii Rai1 in complex with pU(S)6-Mn2+X-RAY DIFFRACTION2.44
35BTE|1|CCrystal structure of Ashbya gossypii Rai1 in complex with pU(S)6-Mn2+X-RAY DIFFRACTION2.44
43PEW|1|BS. cerevisiae Dbp5 L327V bound to RNA and ADP BeF3X-RAY DIFFRACTION1.56
53PEY|1|BS. cerevisiae Dbp5 bound to RNA and ADP BeF3X-RAY DIFFRACTION1.46
63EX7|1|FThe crystal structure of EJC in its transition stateX-RAY DIFFRACTION2.36
72HYI|1|LStructure of the human exon junction complex with a trapped DEAD-box helicase bound to RNAX-RAY DIFFRACTION2.36
83EX7|1|JThe crystal structure of EJC in its transition stateX-RAY DIFFRACTION2.36
92HYI|1|FStructure of the human exon junction complex with a trapped DEAD-box helicase bound to RNAX-RAY DIFFRACTION2.36
103PF5|1|SCrystal structure of Bs-CspB in complex with rU6X-RAY DIFFRACTION1.681
113O8C|1|CVisualizing ATP-dependent RNA Translocation by the NS3 Helicase from HCVX-RAY DIFFRACTION25
123O8R|1|CVisualizing ATP-dependent RNA Translocation by the NS3 Helicase from HCVX-RAY DIFFRACTION2.35
134ALP|1|EThe Lin28b Cold shock domain in complex with hexauridineX-RAY DIFFRACTION1.486

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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