1 | 4YBB|1|DA (rep) | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | High-resolution structure of the Escherichia coli ribosome | X-ray diffraction | 2.1 | 2015-03-18 |
2 | 4YBB|1|CA | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | High-resolution structure of the Escherichia coli ribosome | X-ray diffraction | 2.1 | 2015-03-18 |
3 | 8B0X|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli B | Bacteria | RF02541 | Translating 70S ribosome in the unrotated state (P and E, tRNAs) | Electron microscopy | 1.55 | 2022-11-30 |
4 | 8CGK|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli BW25113 | Bacteria | RF02541 | Lincomycin and Avilamycin bound to the 50S subunit | Electron microscopy | 1.64 | 2023-07-19 |
5 | 8CGV|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli BW25113 | Bacteria | RF02541 | Tiamulin bound to the 50S subunit | Electron microscopy | 1.66 | 2023-08-02 |
6 | 8E30|1|I | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | E. coli 50S ribosome bound to compound streptogramin A analog 3142 | Electron microscopy | 1.91 | 2023-06-28 |
7 | 8CEU|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli BW25113 | Bacteria | RF02541 | Retapamulin and Capreomycin bound to the 50S subunit | Electron microscopy | 1.83 | 2023-07-26 |
8 | 8FTO|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | E. coli 70S ribosome with an improved MS2 tag inserted in H98 | Electron microscopy | 1.85 | 2023-08-02 |
9 | 8E3O|1|I | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | E. coli 50S ribosome bound to solithromycin and VM1 | Electron microscopy | 1.99 | 2023-06-28 |
10 | 8E49|1|I | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | E. coli 50S ribosome bound to antibiotic analog SLC31 | Electron microscopy | 2.05 | 2023-06-28 |
11 | 8CAM|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli BW25113 | Bacteria | RF02541 | Evernimicin bound to the 50S subunit | Electron microscopy | 1.86 | 2023-07-26 |
12 | 7QQ3|1|I | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli K-12 | Bacteria | RF02541 | Cryo-EM structure of the E.coli 50S ribosomal subunit in complex with the antibiotic Myxovalargin A. | Electron microscopy | 2.1 | 2023-01-18 |
13 | 8AYE|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | E. coli 70S ribosome bound to thermorubin and fMet-tRNA | Electron microscopy | 1.96 | 2023-03-01 |
14 | 7ZP8|1|b | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | 70S E. coli ribosome with a stalled filamin domain 5 nascent chain | Electron microscopy | 2.2 | 2022-08-10 |
15 | 8E43|1|I | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | E. coli 50S ribosome bound to compound streptogramin A analog 3336 | Electron microscopy | 2.09 | 2023-06-28 |
16 | 7K00|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Structure of the Bacterial Ribosome at 2 Angstrom Resolution | Electron microscopy | 1.98 | 2020-09-23 |
17 | 8CGD|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli BW25113 | Bacteria | RF02541 | Clindamycin bound to the 50S subunit | Electron microscopy | 1.98 | 2023-07-26 |
18 | 8QOA|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli BW25113 | Bacteria | RF02541 | Structure of SecM-stalled Escherichia coli 70S ribosome | Electron microscopy | 2 | 2024-03-20 |
19 | 8G6W|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Structure of WT E.coli 70S ribosome complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site ortho-aminobenzoic acid charged NH-tRNAPhe | Electron microscopy | 2.02 | 2023-04-05 |
20 | 8E41|1|I | Large subunit ribosomal RNA | 50S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | E. coli 50S ribosome bound to tiamulin and VS1 | Electron microscopy | 2.13 | 2023-06-28 |
21 | 8BIM|1|0 | Large subunit ribosomal RNA | 23S rRNA RRLG-RRNA | Escherichia coli K-12 | Bacteria | RF02541 | Initiation complex of the E. coli 70S ribosome with mRNA containing AAm6A codon in the A-site | Electron microscopy | 2.04 | 2023-08-16 |
22 | 8BIL|1|0 | Large subunit ribosomal RNA | 23S rRNA RRLG-RRNA | Escherichia coli K-12 | Bacteria | RF02541 | Initiation complex of the E. coli 70S ribosome with mRNA containing AAA codon in the A-site. | Electron microscopy | 2.04 | 2023-08-16 |
23 | 6XZ7|1|A | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | E. coli 50S ribosomal subunit in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet). | Electron microscopy | 2.1 | 2020-07-22 |
24 | 7Z20|1|b | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | 70S E. coli ribosome with an extended uL23 loop from Candidatus marinimicrobia and a stalled filamin domain 5 nascent chain | Electron microscopy | 2.29 | 2022-08-10 |
25 | 8QBT|1|A | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli BW25113 | Bacteria | RF02541 | E. coli ApdP-stalled ribosomal complex | Electron microscopy | 2.2 | 2024-03-20 |
26 | 7LVK|1|I | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Cfr-modified 50S subunit from Escherichia coli | Electron microscopy | 2.2 | 2021-12-15 |
27 | 6PJ6|1|I | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | High resolution cryo-EM structure of E.coli 50S | Electron microscopy | 2.2 | 2020-01-22 |
28 | 8G6Y|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site 3-aminopyridine-4-carboxylic acid charged NH-tRNAPhe | Electron microscopy | 2.09 | 2023-04-05 |
29 | 8EMM|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates | Electron microscopy | 2.1 | 2023-05-31 |
30 | 8BGE|1|0 | Large subunit ribosomal RNA | 23S rRNA RRLG-RRNA | Escherichia coli K-12 | Bacteria | RF02541 | Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAm6A mRNA codon in the A-site after uncompleted di-peptide formation | Electron microscopy | 2.11 | 2023-08-16 |
31 | 8E35|1|I | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | E. coli 50S ribosome bound to compound SAB002 | Electron microscopy | 2.27 | 2023-06-28 |
32 | 8ANA|1|a | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli BW25113 | Bacteria | RF02541 | Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the 50S ribosomal subunit | Electron microscopy | 2.1 | 2023-03-08 |
33 | 7N1P|1|23 | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli K-12 | Bacteria | RF02541 | Elongating 70S ribosome complex in a classical pre-translocation (PRE-C) conformation | Electron microscopy | 2.33 | 2021-07-14 |
34 | 8E48|1|I | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | E. coli 50S ribosome bound to antibiotic analog SLC30 | Electron microscopy | 2.27 | 2023-06-28 |
35 | 8E33|1|I | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | E. coli 50S ribosome bound to compound streptogramin analog SAB001 | Electron microscopy | 2.23 | 2023-06-28 |
36 | 7PJS|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Structure of the 70S ribosome with tRNAs in the classical pre-translocation state and apramycin (C) | Electron microscopy | 2.35 | 2021-10-20 |
37 | 8E3M|1|I | Large subunit ribosomal RNA | 50S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | E. coli 50S ribosome bound to L-linker solithromycin conjugate | Electron microscopy | 2.25 | 2023-06-28 |
38 | 7S1H|1|I | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Wild-type Escherichia coli ribosome with antibiotic linezolid | Electron microscopy | 2.35 | 2021-11-17 |
39 | 8E47|1|I | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | E. coli 50S ribosome bound to antibiotic analog SLC26 | Electron microscopy | 2.32 | 2023-06-28 |
40 | 8E45|1|I | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | E. coli 50S ribosome bound to antibiotic analog SLC17 | Electron microscopy | 2.3 | 2023-06-28 |
41 | 8E42|1|I | Large subunit ribosomal RNA | 50S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | E. coli 50S ribosome bound to tiamulin and azithromycin | Electron microscopy | 2.29 | 2023-06-28 |
42 | 8E46|1|I | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | E. coli 50S ribosome bound to antibiotic analog SLC21 | Electron microscopy | 2.32 | 2023-06-28 |
43 | 8BHL|1|0 | Large subunit ribosomal RNA | 23S rRNA RRLG-RRNA | Escherichia coli K-12 | Bacteria | RF02541 | Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and Am6AA mRNA codon in the A-site after uncompleted di-peptide formation | Electron microscopy | 2.21 | 2023-08-16 |
44 | 8E32|1|I | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | E. coli 50S ribosome bound to compound streptogramin analogs SA1 and SB1 | Electron microscopy | 2.35 | 2023-06-28 |
45 | 8E3L|1|I | Large subunit ribosomal RNA | 50S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | E. coli 50S ribosome bound to D-linker solithromycin conjugate | Electron microscopy | 2.35 | 2023-06-28 |
46 | 7S1K|1|I | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Cfr-modified Escherichia coli stalled ribosome with antibiotic radezolid | Electron microscopy | 2.42 | 2022-01-19 |
47 | 7O1A|1|BA | Large subunit ribosomal RNA | Ribosomal RNA 23S | Escherichia coli K-12 | Bacteria | RF02541 | Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome complex stalled in response to L-tryptophan | Electron microscopy | 2.4 | 2021-09-01 |
48 | 8EIU|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | E. coli 70S ribosome with A-loop mutations U2554C and U2555C | Electron microscopy | 2.24 | 2023-02-01 |
49 | 7S1J|1|I | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Wild-type Escherichia coli ribosome with antibiotic radezolid | Electron microscopy | 2.47 | 2022-03-02 |
50 | 7S1I|1|I | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Wild-type Escherichia coli stalled ribosome with antibiotic radezolid | Electron microscopy | 2.48 | 2022-03-02 |
51 | 7S1G|1|I | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | wild-type Escherichia coli stalled ribosome with antibiotic linezolid | Electron microscopy | 2.48 | 2021-11-17 |
52 | 8E36|1|I | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | E. coli 50S ribosome bound to compound streptogramin A analog 3146 | Electron microscopy | 2.38 | 2023-06-28 |
53 | 8BF7|1|0 | Large subunit ribosomal RNA | 23S rRNA RRLG-RRNA | Escherichia coli K-12 | Bacteria | RF02541 | Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site | Electron microscopy | 2.33 | 2023-08-16 |
54 | 8AKN|1|a | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli BW25113 | Bacteria | RF02541 | Cryo-EM structure of the proline-rich antimicrobial peptide drosocin bound to the terminating ribosome | Electron microscopy | 2.3 | 2023-03-08 |
55 | 8G6X|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site meta-aminobenzoic acid charged NH-tRNAPhe | Electron microscopy | 2.31 | 2023-03-22 |
56 | 7BL4|1|A | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli K-12 | Bacteria | RF02541 | in vitro reconstituted 50S-ObgE-GMPPNP-RsfS particle | Electron microscopy | 2.4 | 2021-05-12 |
57 | 8HSP|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | E. coli 70S ribosome complexed with tRNA_Ile2 bearing L34 and t6A37 in classical state | Electron microscopy | 2.32 | 2024-04-03 |
58 | 7Y7G|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Structure of the Bacterial Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) | Electron microscopy | 2.34 | 2023-10-25 |
59 | 8BHP|1|0 | Large subunit ribosomal RNA | 23S rRNA RRLG-RRNA | Escherichia coli K-12 | Bacteria | RF02541 | Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and m6AAA mRNA codon in the A-site after uncompleted di-peptide formation | Electron microscopy | 2.37 | 2023-08-16 |
60 | 8HTZ|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | E. coli 70S ribosome complexed with H. marismortui tRNA_Ile2 bearing agm2C34 in classical state | Electron microscopy | 2.4 | 2024-04-03 |
61 | 7Y7E|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Structure of the Bacterial Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU) | Electron microscopy | 2.41 | 2023-10-25 |
62 | 6PCR|1|I | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | E. coli 50S ribosome bound to compound 40o | Electron microscopy | 2.5 | 2020-06-17 |
63 | 8IFB|1|a | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | Dibekacin-bound E.coli 70S ribosome in the PURE system | Electron microscopy | 2.43 | 2024-02-14 |
64 | 7Y7F|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli | Bacteria | RF02541 | Structure of the Bacterial Ribosome with human tRNA Asp(ManQ34) and mRNA(GAC) | Electron microscopy | 2.43 | 2023-10-25 |
65 | 6PC6|1|I | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | E. coli 50S ribosome bound to compound 47 | Electron microscopy | 2.5 | 2020-06-17 |
66 | 6PC7|1|I | Large subunit ribosomal RNA | 23S ribosomal RNA | Escherichia coli | Bacteria | RF02541 | E. coli 50S ribosome bound to compound 46 | Electron microscopy | 2.5 | 2020-06-17 |
67 | 8CGJ|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli BW25113 | Bacteria | RF02541 | Streptomycin bound to the 30S body | Electron microscopy | 1.79 | 2023-07-26 |
68 | 8CGU|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli BW25113 | Bacteria | RF02541 | Gentamicin bound to the 30S body | Electron microscopy | 1.89 | 2023-07-26 |
69 | 8CEP|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli BW25113 | Bacteria | RF02541 | Round2 30S head (no antibiotic) | Electron microscopy | 2.04 | 2023-07-19 |
70 | 8CGR|1|a | Large subunit ribosomal RNA | 23S rRNA | Escherichia coli BW25113 | Bacteria | RF02541 | Apramycin bound to the 30S body | Electron microscopy | 2.12 | 2023-07-26 |