#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
15D8T|1|A+ 5D8T|1|B (rep)RNA oligonucleotide containing (S)-C5'-Me-2'-FUsynthetic constructRNA octamer containing (S)-5' methyl, 2'-F U.X-ray diffraction1.22016-06-29
26CY2|1|A+ 6CY2|1|BRNA (5'-R(*(CBV)P*GP*AP*AP*(UOA)P*UP*CP*G)-3')synthetic constructRNA octamer containing 2'-OMe, 4'Calpha-OMe U.X-ray diffraction1.42018-08-29
36CXZ|1|A+ 6CXZ|1|BRNA (5'-R(*CP*GP*AP*AP*(U4M)P*UP*CP*G)-3')synthetic constructRNA octamer containing 2'-F, 4'-Calpha-Me U.X-ray diffraction1.52018-08-29
45VR4|1|C+ 5VR4|1|DRNA (5'-R(*CP*GP*AP*AP*(UMO)P*UP*CP*G)-3')synthetic constructRNA octamer containing 2'-F-4'-OMe U.X-ray diffraction1.52017-10-04
55VR4|1|A+ 5VR4|1|BRNA (5'-R(*CP*GP*AP*AP*(UMO)P*UP*CP*G)-3')synthetic constructRNA octamer containing 2'-F-4'-OMe U.X-ray diffraction1.52017-10-04
66CY4|1|C+ 6CY4|1|DRNA (5'-R(*(CBV)P*GP*AP*AP*(UOB)P*UP*CP*G)-3')synthetic constructRNA octamer containing 2'-OMe, 4'- Cbeta-OMe U.X-ray diffraction1.852018-08-29
76CY4|1|A+ 6CY4|1|BRNA (5'-R(*(CBV)P*GP*AP*AP*(UOB)P*UP*CP*G)-3')synthetic constructRNA octamer containing 2'-OMe, 4'- Cbeta-OMe U.X-ray diffraction1.852018-08-29
86CY4|1|E+ 6CY4|1|FRNA (5'-R(*(CBV)P*GP*AP*AP*(UOB)P*UP*CP*G)-3')synthetic constructRNA octamer containing 2'-OMe, 4'- Cbeta-OMe U.X-ray diffraction1.852018-08-29
96CY4|1|G+ 6CY4|1|HRNA (5'-R(*(CBV)P*GP*AP*AP*(UOB)P*UP*CP*G)-3')synthetic constructRNA octamer containing 2'-OMe, 4'- Cbeta-OMe U.X-ray diffraction1.852018-08-29
105DER|1|A+ 5DER|1|BRNA oligonucleotide containing (R)-C5'-Me-2'-FUsynthetic constructRNA oligonucleotide containing (R)-C5'-ME-2'F UX-ray diffraction1.82016-06-29
115DER|1|C+ 5DER|1|DRNA oligonucleotide containing (R)-C5'-Me-2'-FUsynthetic constructRNA oligonucleotide containing (R)-C5'-ME-2'F UX-ray diffraction1.82016-06-29
126CY0|1|A+ 6CY0|1|BRNA (5'-R(*(CBV)P*GP*AP*AP*(UFB)P*UP*CP*G)-3')synthetic constructRNA octamer containing 2'-F, 4'-Cbeta-OMe U.X-ray diffraction2.42018-08-29
136CY0|1|C+ 6CY0|1|DRNA (5'-R(*(CBV)P*GP*AP*AP*(UFB)P*UP*CP*G)-3')synthetic constructRNA octamer containing 2'-F, 4'-Cbeta-OMe U.X-ray diffraction2.42018-08-29
146CY0|1|E+ 6CY0|1|FRNA (5'-R(*(CBV)P*GP*AP*AP*(UFB)P*UP*CP*G)-3')synthetic constructRNA octamer containing 2'-F, 4'-Cbeta-OMe U.X-ray diffraction2.42018-08-29
156CY0|1|G+ 6CY0|1|HRNA (5'-R(*(CBV)P*GP*AP*AP*(UFB)P*UP*CP*G)-3')synthetic constructRNA octamer containing 2'-F, 4'-Cbeta-OMe U.X-ray diffraction2.42018-08-29

Release history

Release3.753.763.773.783.793.803.813.823.833.843.853.863.873.883.893.903.913.923.933.943.953.963.973.983.993.1003.1013.1023.1033.1043.1053.1063.1073.1083.1093.1103.1113.1123.1133.1143.1153.1163.1173.1183.1193.1203.1213.1223.1233.1243.1253.1263.1273.1283.1293.1303.1313.1323.1333.1343.1353.1363.1373.1383.1393.1403.1413.1423.1433.1443.1453.1463.1473.1483.1493.1503.1513.1523.1533.1543.1553.1563.1573.1583.1593.1603.1613.1623.1633.1643.1653.1663.1673.1683.1693.1703.1713.1723.1733.1743.1753.1763.1773.1783.1793.1803.1813.1823.1833.1843.1853.1863.1873.1883.1893.1903.1913.1923.1933.1943.1953.1963.1973.1983.1993.2003.2013.2023.2033.2043.2053.2063.2073.2083.2093.2103.2113.2123.2133.2143.2153.2163.2173.2183.2193.2203.2213.2223.2233.2243.2253.2263.2273.2283.2293.2303.2313.2323.2333.2343.2353.2363.2373.2383.2393.2403.2413.2423.2433.2443.2453.2463.2473.2483.2493.2503.2513.2523.2533.2543.2553.2563.2573.2583.2593.2603.2613.2623.2633.2643.2653.2663.2673.2683.2693.2703.2713.2723.2733.2743.2753.2763.2773.2783.2793.2803.2813.2823.2833.2843.2853.2863.2873.2883.2893.2903.2913.2923.2933.2943.2953.2963.2973.2983.2993.3003.3013.3023.3033.3043.3053.3063.3073.3083.3093.3103.3113.3123.3133.3143.3153.3163.3173.3183.3193.3203.3213.3223.3233.3243.3253.3263.3273.3283.3293.3303.3313.3323.3333.3343.3353.3363.3373.3383.3393.3403.3413.3423.3433.3443.3453.3463.3473.3483.3493.3503.3513.3523.3533.3543.3553.3563.357
Date2019-05-242019-05-312019-06-072019-06-142019-06-212019-06-282019-07-052019-07-122019-07-192019-07-262019-08-022019-08-092019-08-162019-08-232019-08-282019-09-042019-09-112019-09-192019-09-252019-10-032019-10-092019-10-162019-10-232019-10-302019-11-062019-11-132019-11-202019-11-272019-12-042019-12-112019-12-182019-12-252020-01-012020-01-082020-01-152020-01-222020-01-292020-02-052020-02-122020-02-192020-02-262020-03-042020-03-112020-03-182020-03-252020-04-012020-04-082020-04-152020-04-222020-04-292020-05-062020-05-132020-05-202020-05-272020-06-032020-06-102020-06-172020-06-242020-07-012020-07-082020-07-152020-07-222020-07-292020-08-052020-08-122020-08-192020-08-262020-09-022020-09-092020-09-162020-09-232020-09-302020-10-072020-10-142020-10-212020-10-282020-11-042020-11-112020-11-182020-11-252020-12-022020-12-092020-12-162020-12-232020-12-302021-01-062021-01-132021-01-202021-01-272021-02-032021-02-102021-02-172021-02-242021-03-032021-03-102021-03-172021-03-242021-03-312021-04-072021-04-142021-04-212021-04-282021-05-052021-05-122021-05-192021-05-262021-06-022021-06-092021-06-162021-06-232021-06-302021-07-072021-07-142021-07-212021-07-282021-08-042021-08-112021-08-182021-08-252021-09-012021-09-082021-09-152021-09-222021-09-292021-10-062021-10-132021-10-202021-10-272021-11-032021-11-102021-11-172021-11-242021-12-012021-12-082021-12-152021-12-222021-12-292022-01-052022-01-122022-01-192022-01-262022-02-022022-02-092022-02-162022-02-232022-03-022022-03-092022-03-162022-03-232022-03-302022-04-062022-04-132022-04-202022-04-272022-05-042022-05-112022-05-182022-05-252022-06-012022-06-082022-06-152022-06-222022-06-292022-07-062022-07-132022-07-202022-07-272022-08-032022-08-102022-08-172022-08-242022-08-312022-09-072022-09-142022-09-212022-09-282022-10-052022-10-122022-10-192022-10-262022-11-022022-11-092022-11-162022-11-232022-11-302022-12-072022-12-142022-12-212022-12-282023-01-042023-01-112023-01-182023-01-252023-02-012023-02-082023-02-152023-02-222023-03-012023-03-082023-03-152023-03-222023-03-292023-04-052023-04-122023-04-192023-04-262023-05-032023-05-102023-05-172023-05-242023-05-312023-06-072023-06-142023-06-212023-06-282023-07-052023-07-122023-07-192023-07-262023-08-022023-08-092023-08-162023-08-232023-08-302023-09-062023-09-132023-09-202023-09-272023-10-042023-10-112023-10-182023-10-252023-11-012023-11-082023-11-152023-11-242023-11-292023-12-062023-12-132023-12-202023-12-272024-01-032024-01-102024-01-172024-01-242024-01-312024-02-072024-02-142024-02-212024-02-282024-03-062024-03-132024-03-202024-03-272024-04-032024-04-102024-04-172024-04-242024-05-012024-05-082024-05-152024-05-222024-05-292024-06-052024-06-122024-06-192024-06-262024-07-032024-07-102024-07-172024-07-252024-07-312024-08-072024-08-142024-08-212024-08-282024-09-042024-09-112024-09-182024-09-252024-10-022024-10-092024-10-16

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_2.5_87665.1NR_2.5_07963.13.75(1) 6CY4|1|C+6CY4|1|D(14) 5D8T|1|A+5D8T|1|B, 5DER|1|A+5DER|1|B, 5DER|1|C+5DER|1|D, 5VR4|1|A+5VR4|1|B, 5VR4|1|C+5VR4|1|D, 6CXZ|1|A+6CXZ|1|B, 6CY0|1|A+6CY0|1|B, 6CY0|1|C+6CY0|1|D, 6CY0|1|E+6CY0|1|F, 6CY0|1|G+6CY0|1|H, 6CY2|1|A+6CY2|1|B, 6CY4|1|A+6CY4|1|B, 6CY4|1|E+6CY4|1|F, 6CY4|1|G+6CY4|1|H(0)
NR_2.5_87665.1NR_2.5_31969.13.75(1) 6CY2|1|A+6CY2|1|B(14) 5D8T|1|A+5D8T|1|B, 5DER|1|A+5DER|1|B, 5DER|1|C+5DER|1|D, 5VR4|1|A+5VR4|1|B, 5VR4|1|C+5VR4|1|D, 6CXZ|1|A+6CXZ|1|B, 6CY0|1|A+6CY0|1|B, 6CY0|1|C+6CY0|1|D, 6CY0|1|E+6CY0|1|F, 6CY0|1|G+6CY0|1|H, 6CY4|1|A+6CY4|1|B, 6CY4|1|C+6CY4|1|D, 6CY4|1|E+6CY4|1|F, 6CY4|1|G+6CY4|1|H(0)
NR_2.5_87665.1NR_2.5_44426.13.75(1) 6CY4|1|A+6CY4|1|B(14) 5D8T|1|A+5D8T|1|B, 5DER|1|A+5DER|1|B, 5DER|1|C+5DER|1|D, 5VR4|1|A+5VR4|1|B, 5VR4|1|C+5VR4|1|D, 6CXZ|1|A+6CXZ|1|B, 6CY0|1|A+6CY0|1|B, 6CY0|1|C+6CY0|1|D, 6CY0|1|E+6CY0|1|F, 6CY0|1|G+6CY0|1|H, 6CY2|1|A+6CY2|1|B, 6CY4|1|C+6CY4|1|D, 6CY4|1|E+6CY4|1|F, 6CY4|1|G+6CY4|1|H(0)
NR_2.5_87665.1NR_2.5_73564.13.75(6) 6CY0|1|A+6CY0|1|B, 6CY0|1|C+6CY0|1|D, 6CY0|1|E+6CY0|1|F, 6CY0|1|G+6CY0|1|H, 6CY4|1|E+6CY4|1|F, 6CY4|1|G+6CY4|1|H(9) 5D8T|1|A+5D8T|1|B, 5DER|1|A+5DER|1|B, 5DER|1|C+5DER|1|D, 5VR4|1|A+5VR4|1|B, 5VR4|1|C+5VR4|1|D, 6CXZ|1|A+6CXZ|1|B, 6CY2|1|A+6CY2|1|B, 6CY4|1|A+6CY4|1|B, 6CY4|1|C+6CY4|1|D(0)
NR_2.5_87665.1NR_2.5_86375.13.75(1) 6CXZ|1|A+6CXZ|1|B(14) 5D8T|1|A+5D8T|1|B, 5DER|1|A+5DER|1|B, 5DER|1|C+5DER|1|D, 5VR4|1|A+5VR4|1|B, 5VR4|1|C+5VR4|1|D, 6CY0|1|A+6CY0|1|B, 6CY0|1|C+6CY0|1|D, 6CY0|1|E+6CY0|1|F, 6CY0|1|G+6CY0|1|H, 6CY2|1|A+6CY2|1|B, 6CY4|1|A+6CY4|1|B, 6CY4|1|C+6CY4|1|D, 6CY4|1|E+6CY4|1|F, 6CY4|1|G+6CY4|1|H(0)
NR_2.5_87665.1NR_2.5_97273.13.75(5) 5D8T|1|A+5D8T|1|B, 5DER|1|A+5DER|1|B, 5DER|1|C+5DER|1|D, 5VR4|1|A+5VR4|1|B, 5VR4|1|C+5VR4|1|D(10) 6CXZ|1|A+6CXZ|1|B, 6CY0|1|A+6CY0|1|B, 6CY0|1|C+6CY0|1|D, 6CY0|1|E+6CY0|1|F, 6CY0|1|G+6CY0|1|H, 6CY2|1|A+6CY2|1|B, 6CY4|1|A+6CY4|1|B, 6CY4|1|C+6CY4|1|D, 6CY4|1|E+6CY4|1|F, 6CY4|1|G+6CY4|1|H(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLength
15D8T|1|A+ 5D8T|1|BRNA octamer containing (S)-5' methyl, 2'-F U.X-RAY DIFFRACTION1.26
25DER|1|C+ 5DER|1|DRNA oligonucleotide containing (R)-C5'-ME-2'F UX-RAY DIFFRACTION1.87
35DER|1|A+ 5DER|1|BRNA oligonucleotide containing (R)-C5'-ME-2'F UX-RAY DIFFRACTION1.87
45VR4|1|C+ 5VR4|1|DRNA octamer containing 2'-F-4'-OMe U.X-RAY DIFFRACTION1.57
55VR4|1|A+ 5VR4|1|BRNA octamer containing 2'-F-4'-OMe U.X-RAY DIFFRACTION1.57
66CY2|1|A+ 6CY2|1|BRNA octamer containing 2'-OMe, 4'Calpha-OMe U.X-RAY DIFFRACTION1.46
76CXZ|1|A+ 6CXZ|1|BRNA octamer containing 2'-F, 4'-Calpha-Me U.X-RAY DIFFRACTION1.59
86CY4|1|A+ 6CY4|1|BRNA octamer containing 2'-OMe, 4'- Cbeta-OMe U.X-RAY DIFFRACTION1.856
96CY4|1|C+ 6CY4|1|DRNA octamer containing 2'-OMe, 4'- Cbeta-OMe U.X-RAY DIFFRACTION1.856
106CY4|1|G+ 6CY4|1|HRNA octamer containing 2'-OMe, 4'- Cbeta-OMe U.X-RAY DIFFRACTION1.856
116CY4|1|E+ 6CY4|1|FRNA octamer containing 2'-OMe, 4'- Cbeta-OMe U.X-RAY DIFFRACTION1.856
126CY0|1|C+ 6CY0|1|DRNA octamer containing 2'-F, 4'-Cbeta-OMe U.X-RAY DIFFRACTION2.46
136CY0|1|E+ 6CY0|1|FRNA octamer containing 2'-F, 4'-Cbeta-OMe U.X-RAY DIFFRACTION2.46
146CY0|1|G+ 6CY0|1|HRNA octamer containing 2'-F, 4'-Cbeta-OMe U.X-RAY DIFFRACTION2.46
156CY0|1|A+ 6CY0|1|BRNA octamer containing 2'-F, 4'-Cbeta-OMe U.X-RAY DIFFRACTION2.46

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


Coloring options:

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