#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
16N6I|1|C (rep)RNA (5'-R(P*GP*G)-3')synthetic constructHuman REXO2 bound to pGGX-ray diffraction1.432019-06-12
26N6I|1|DRNA (5'-R(P*GP*G)-3')synthetic constructHuman REXO2 bound to pGGX-ray diffraction1.432019-06-12
36N6A|1|DRNA (5'-R(P*GP*G)-3')Pseudomonas aeruginosaVibrio cholerae Oligoribonuclease bound to pGGX-ray diffraction1.52019-06-12
43U2E|1|DRNA (5'-R(P*GP*G)-3')EAL domain of phosphodiesterase PdeA in complex with 5'-pGpG and Mg++X-ray diffraction2.322011-10-12
53U2E|1|CRNA (5'-R(P*GP*G)-3')EAL domain of phosphodiesterase PdeA in complex with 5'-pGpG and Mg++X-ray diffraction2.322011-10-12
65UEF|1|CRNA (5'-R(P*GP*G)-3')synthetic constructRNA primer-template complex with guanosine dinucleotide p(5')G(3')p(5')G ligandX-ray diffraction2.12017-07-05
75UEF|1|DRNA (5'-R(P*GP*G)-3')synthetic constructRNA primer-template complex with guanosine dinucleotide p(5')G(3')p(5')G ligandX-ray diffraction2.12017-07-05
84AFY|1|D5'-R(*GP*GP)-3'synthetic constructCrystal structure of the FimX EAL domain in complex with reaction product pGpGX-ray diffraction2.012013-01-09
94AFY|1|C5'-R(*GP*GP)-3'synthetic constructCrystal structure of the FimX EAL domain in complex with reaction product pGpGX-ray diffraction2.012013-01-09
106S0M|1|CRNA (5'-R(P*G)-3')Escherichia coliStructural and dynamic studies provide insights into specificity and allosteric regulation of Ribonuclease AS, a key enzyme in mycobacterial virulenceX-ray diffraction22019-08-28

Release history

Release3.893.903.913.923.933.94
Date2019-08-282019-09-042019-09-112019-09-192019-09-252019-10-03

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_2.5_89612.6NR_2.5_89612.53.89(9) 3U2E|1|C, 3U2E|1|D, 4AFY|1|C, 4AFY|1|D, 5UEF|1|C, 5UEF|1|D, 6N6A|1|D, 6N6I|1|C, 6N6I|1|D(1) 6S0M|1|C(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_2.5_89612.6NR_2.5_89612.73.95(10) 3U2E|1|C, 3U2E|1|D, 4AFY|1|C, 4AFY|1|D, 5UEF|1|C, 5UEF|1|D, 6N6A|1|D, 6N6I|1|C, 6N6I|1|D, 6S0M|1|C(0) (4) 6IJ2|1|E, 6IJ2|1|F, 6IJ2|1|G, 6IJ2|1|H

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLength
13U2E|1|DEAL domain of phosphodiesterase PdeA in complex with 5'-pGpG and Mg++X-RAY DIFFRACTION2.322
24AFY|1|DCrystal structure of the FimX EAL domain in complex with reaction product pGpGX-RAY DIFFRACTION2.012
34AFY|1|CCrystal structure of the FimX EAL domain in complex with reaction product pGpGX-RAY DIFFRACTION2.012
43U2E|1|CEAL domain of phosphodiesterase PdeA in complex with 5'-pGpG and Mg++X-RAY DIFFRACTION2.322
56N6I|1|DHuman REXO2 bound to pGGX-RAY DIFFRACTION1.432
65UEF|1|DRNA primer-template complex with guanosine dinucleotide p(5')G(3')p(5')G ligandX-RAY DIFFRACTION2.12
76N6A|1|DVibrio cholerae Oligoribonuclease bound to pGGX-RAY DIFFRACTION1.52
86S0M|1|CStructural and dynamic studies provide insights into specificity and allosteric regulation of Ribonuclease AS, a key enzyme in mycobacterial virulenceX-RAY DIFFRACTION21
96N6I|1|CHuman REXO2 bound to pGGX-RAY DIFFRACTION1.432
105UEF|1|CRNA primer-template complex with guanosine dinucleotide p(5')G(3')p(5')G ligandX-RAY DIFFRACTION2.12

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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