#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
16N6I|1|C (rep)RNA (5'-R(P*GP*G)-3')synthetic constructHuman REXO2 bound to pGGX-ray diffraction1.432019-06-12
26N6I|1|DRNA (5'-R(P*GP*G)-3')synthetic constructHuman REXO2 bound to pGGX-ray diffraction1.432019-06-12
36N6A|1|DRNA (5'-R(P*GP*G)-3')Pseudomonas aeruginosaVibrio cholerae Oligoribonuclease bound to pGGX-ray diffraction1.52019-06-12
46IJ2|1|FRNA (5'-R(P*GP*G)-3')synthetic constructCrystal structure of a standalone versatile EAL protein from Vibrio cholerae O395 - 5'-pGpG bound formX-ray diffraction1.72019-10-09
56IJ2|1|GRNA (5'-R(P*GP*G)-3')synthetic constructCrystal structure of a standalone versatile EAL protein from Vibrio cholerae O395 - 5'-pGpG bound formX-ray diffraction1.72019-10-09
66IJ2|1|HRNA (5'-R(P*GP*G)-3')synthetic constructCrystal structure of a standalone versatile EAL protein from Vibrio cholerae O395 - 5'-pGpG bound formX-ray diffraction1.72019-10-09
76IJ2|1|ERNA (5'-R(P*GP*G)-3')synthetic constructCrystal structure of a standalone versatile EAL protein from Vibrio cholerae O395 - 5'-pGpG bound formX-ray diffraction1.72019-10-09
83U2E|1|DRNA (5'-R(P*GP*G)-3')EAL domain of phosphodiesterase PdeA in complex with 5'-pGpG and Mg++X-ray diffraction2.322011-10-12
93U2E|1|CRNA (5'-R(P*GP*G)-3')EAL domain of phosphodiesterase PdeA in complex with 5'-pGpG and Mg++X-ray diffraction2.322011-10-12
105UEF|1|CRNA (5'-R(P*GP*G)-3')synthetic constructRNA primer-template complex with guanosine dinucleotide p(5')G(3')p(5')G ligandX-ray diffraction2.12017-07-05
115UEF|1|DRNA (5'-R(P*GP*G)-3')synthetic constructRNA primer-template complex with guanosine dinucleotide p(5')G(3')p(5')G ligandX-ray diffraction2.12017-07-05
124AFY|1|D5'-R(*GP*GP)-3'synthetic constructCrystal structure of the FimX EAL domain in complex with reaction product pGpGX-ray diffraction2.012013-01-09
136OWL|1|BRNA (5'-R(P*G)-3')synthetic constructRNA oligonucleotides with 3'-arabino guanosine co-crystallized with GMPX-ray diffraction22020-02-26
146OWL|1|CRNA (5'-R(P*G)-3')synthetic constructRNA oligonucleotides with 3'-arabino guanosine co-crystallized with GMPX-ray diffraction22020-02-26
154AFY|1|C5'-R(*GP*GP)-3'synthetic constructCrystal structure of the FimX EAL domain in complex with reaction product pGpGX-ray diffraction2.012013-01-09
166S0M|1|CRNA (5'-R(P*G)-3')Escherichia coliStructural and dynamic studies provide insights into specificity and allosteric regulation of Ribonuclease AS, a key enzyme in mycobacterial virulenceX-ray diffraction22019-08-28

Release history

Release3.1153.1163.1173.1183.1193.1203.1213.1223.1233.1243.1253.1263.1273.1283.1293.1303.1313.1323.1333.1343.1353.1363.1373.1383.1393.1403.1413.1423.1433.1443.1453.1463.1473.1483.1493.1503.1513.1523.1533.1543.155
Date2020-02-262020-03-042020-03-112020-03-182020-03-252020-04-012020-04-082020-04-152020-04-222020-04-292020-05-062020-05-132020-05-202020-05-272020-06-032020-06-102020-06-172020-06-242020-07-012020-07-082020-07-152020-07-222020-07-292020-08-052020-08-122020-08-192020-08-262020-09-022020-09-092020-09-162020-09-232020-09-302020-10-072020-10-142020-10-212020-10-282020-11-042020-11-112020-11-182020-11-252020-12-02

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_2.5_89612.8NR_2.5_89612.73.115(14) 3U2E|1|C, 3U2E|1|D, 4AFY|1|C, 4AFY|1|D, 5UEF|1|C, 5UEF|1|D, 6IJ2|1|E, 6IJ2|1|F, 6IJ2|1|G, 6IJ2|1|H, 6N6A|1|D, 6N6I|1|C, 6N6I|1|D, 6S0M|1|C(2) 6OWL|1|B, 6OWL|1|C(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_2.5_89612.8NR_2.5_89612.93.156(16) 3U2E|1|C, 3U2E|1|D, 4AFY|1|C, 4AFY|1|D, 5UEF|1|C, 5UEF|1|D, 6IJ2|1|E, 6IJ2|1|F, 6IJ2|1|G, 6IJ2|1|H, 6N6A|1|D, 6N6I|1|C, 6N6I|1|D, 6OWL|1|B, 6OWL|1|C, 6S0M|1|C(0) (0)

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLength
16N6I|1|CHuman REXO2 bound to pGGX-RAY DIFFRACTION1.432
26N6I|1|DHuman REXO2 bound to pGGX-RAY DIFFRACTION1.432
36N6A|1|DVibrio cholerae Oligoribonuclease bound to pGGX-RAY DIFFRACTION1.52
45UEF|1|DRNA primer-template complex with guanosine dinucleotide p(5')G(3')p(5')G ligandX-RAY DIFFRACTION2.12
56OWL|1|CRNA oligonucleotides with 3'-arabino guanosine co-crystallized with GMPX-RAY DIFFRACTION21
66OWL|1|BRNA oligonucleotides with 3'-arabino guanosine co-crystallized with GMPX-RAY DIFFRACTION21
76IJ2|1|ECrystal structure of a standalone versatile EAL protein from Vibrio cholerae O395 - 5'-pGpG bound formX-RAY DIFFRACTION1.72
83U2E|1|DEAL domain of phosphodiesterase PdeA in complex with 5'-pGpG and Mg++X-RAY DIFFRACTION2.322
94AFY|1|DCrystal structure of the FimX EAL domain in complex with reaction product pGpGX-RAY DIFFRACTION2.012
104AFY|1|CCrystal structure of the FimX EAL domain in complex with reaction product pGpGX-RAY DIFFRACTION2.012
113U2E|1|CEAL domain of phosphodiesterase PdeA in complex with 5'-pGpG and Mg++X-RAY DIFFRACTION2.322
125UEF|1|CRNA primer-template complex with guanosine dinucleotide p(5')G(3')p(5')G ligandX-RAY DIFFRACTION2.12
136IJ2|1|GCrystal structure of a standalone versatile EAL protein from Vibrio cholerae O395 - 5'-pGpG bound formX-RAY DIFFRACTION1.72
146S0M|1|CStructural and dynamic studies provide insights into specificity and allosteric regulation of Ribonuclease AS, a key enzyme in mycobacterial virulenceX-RAY DIFFRACTION21
156IJ2|1|FCrystal structure of a standalone versatile EAL protein from Vibrio cholerae O395 - 5'-pGpG bound formX-RAY DIFFRACTION1.72
166IJ2|1|HCrystal structure of a standalone versatile EAL protein from Vibrio cholerae O395 - 5'-pGpG bound formX-RAY DIFFRACTION1.72

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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