#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
14NLF|1|A (rep)23S ribosomal RNA Sarcin Ricin Loop2'-trifluoromethylthio-2'-deoxycytidine-modified SRLX-ray diffraction12014-11-19
25D99|1|ARNA (27-MER) hairpin from sarcin-ricin domain of E. coli 23S rRNAEnterobacteria phage L13DW4 redetermined by direct methods starting from random phase anglesX-ray diffraction0.972016-04-13
36Y0Y|1|ARNA (27-MER)synthetic constructSarcin Ricin Loop, mutant C2666UX-ray diffraction0.952021-02-17
41Q9A|1|ASarcin/ricin 23S rRNACrystal structure of the sarcin/ricin domain from E.coli 23S rRNA at 1.04 resolutionX-ray diffraction1.042003-11-25
54NMG|1|A23S ribosomal RNA Sarcin Ricin Loop2'-Trifluoromethylthio-2'-deoxyuridine-modified SRLX-ray diffraction1.012014-11-19
66ZYB|1|ASarcin-Ricin Loop RNA from Ecoli with a C2667-2'-OCF3 modificationsynthetic constructSarcin-Ricin Loop RNA from Ecoli with a C2667-2'-OCF3 modificationX-ray diffraction0.92020-12-16
73DW4|1|ASarcin/Ricin Domain from E. Coli 23 S rRNACrystal Structure of the Sarcin/Ricin Domain from E. COLI 23 S rRNA, U2650-OCH3 modifiedX-ray diffraction0.972009-03-24
83DW6|1|ASarcin/Ricin Domain from E. Coli 23 S rRNACrystal Structure of the Sarcin/Ricin Domain from E. COLI 23 S rRNA, U2650-SECH3 modifiedX-ray diffraction12009-03-24
97L3R|1|ARNA (27-MER)synthetic construct23S Sarcin Ricin Loop with a 3-deazapurine A2670X-ray diffraction1.012021-05-05
104Y27|1|A27-mer 23S Sarcin-Ricil LoopEscherichia coliE.coli 23S Sarcin-Ricil Loop, modified with a 2-Me on G2661 and a methylphosphonate on A2662X-ray diffraction12015-11-18
117JJE|1|ARNA (27-MER)synthetic constructSarcin-ricin loop with guanosine dithiophosphate residue.X-ray diffraction1.252020-12-23
123DVZ|1|ASarcin/Ricin Domain from E. Coli 23 S rRNACrystal Structure of the Sarcin/Ricin Domain from E. coli 23 S rRNAX-ray diffraction12009-03-24
134NXH|1|A23S ribosomal RNA Sarcin Ricin LoopEscherichia coli2'-Trifluoromethylthiouridine-modified E. coli 23S rRNA Sarcin Ricin LoopX-ray diffraction1.162014-12-10
145NQI|1|AE.Coli 27-mer SRL RNAEscherichia coliE.coli 16S rRNA Sarcin-Ricin Loop containing a 5-hydroxymethylcytosine modificationX-ray diffraction0.852017-07-26
153S7C|1|AEcoli 23 S rRNA Sarcin Ricin loopCrystal structure of a 2'-azido-uridine-modified RNAX-ray diffraction1.12012-04-11
165MRX|1|ARNA (27-MER)Escherichia coli27-nt SRL with a 5-hydroxymethyl cytidine modificationX-ray diffraction0.852018-01-17
173DW5|1|ASarcin/Ricin Domain from E. Coli 23 S rRNACrystal Structure of the Sarcin/Ricin Domain from E. COLI 23S rRNA, U2656-OCH3 modifiedX-ray diffraction0.962009-03-24
183DW7|1|ASarcin/Ricin Domain from E. Coli 23 S rRNACrystal Structure of the Sarcin/Ricin Domain from E. COLI 23 S rRNA, U2656-SeCH3 modifiedX-ray diffraction12009-03-24
19483D|1|ASARCIN/RICIN RRNA DOMAINCRYSTAL STRUCTURE OF THE SARCIN/RICIN DOMAIN FROM E. COLI 23 S RRNAX-ray diffraction1.111999-10-08
203S8U|1|AEcoli 23 S rRNA Sarcin Ricin loopEscherichia coliCrystal structure of a 2-azido-adenine-modified RNAX-ray diffraction1.22012-04-11
217JJD|1|ARNA (27-MER)synthetic constructSarcin-ricin loop with guanosine monothiophosphate residue.X-ray diffraction1.212020-12-23
221MSY|1|ASARCIN/RICIN DOMAIN FROM 23 S RRNAGUAA tetraloop mutant of Sarcin/Ricin domain from E. Coli 23 S rRNAX-ray diffraction1.412003-02-25
23480D|1|ASARCIN/RICIN DOMAIN FROM 23 S RRNACRYSTAL STRUCTURE OF THE SARCIN/RICIN DOMAIN FROM E. COLI 23 S RRNAX-ray diffraction1.51999-10-08
246Y0T|1|BRNA (27-MER)synthetic constructSarcin Ricin Loop, mutant C2666A U2653G C2667AX-ray diffraction1.3932021-02-17
256Y0T|1|ARNA (27-MER)synthetic constructSarcin Ricin Loop, mutant C2666A U2653G C2667AX-ray diffraction1.3932021-02-17
267M3V|1|ARNA (27-MER)synthetic constructRNA bulged-G motifX-ray diffraction2.192022-03-23
277JJF|1|ARNA/DNA (27-mer)Escherichia coliSarcin-ricin loop with modified residue.X-ray diffraction1.22020-12-23
281JBR|1|D31-mer SRD RNA analogCrystal Structure of the Ribotoxin Restrictocin and a 31-mer SRD RNA InhibitorX-ray diffraction2.152001-10-26
297EEN|1|ADNA/RNA (27-MER)synthetic constructBulged-G motif composed of RNA, DNA and 2'-O-methyl RNAX-ray diffraction1.72022-03-23
307EEN|1|BDNA/RNA (27-MER)synthetic constructBulged-G motif composed of RNA, DNA and 2'-O-methyl RNAX-ray diffraction1.72022-03-23
316ZXZ|1|BSarcin-Ricin Loop RNA from Ecoli with a A2670-2'-OCF3 modificationsynthetic constructSarcin-Ricin Loop RNA from Ecoli with a A2670-2'-OCF3 modificationX-ray diffraction2.442020-12-16
327EEN|1|DDNA/RNA (27-MER)synthetic constructBulged-G motif composed of RNA, DNA and 2'-O-methyl RNAX-ray diffraction1.72022-03-23
331JBS|1|D29-mer sarcin/ricin domain RNA analogCrystal structure of ribotoxin restrictocin and a 29-mer SRD RNA analogX-ray diffraction1.972001-10-26
347EEN|1|CDNA/RNA (27-MER)synthetic constructBulged-G motif composed of RNA, DNA and 2'-O-methyl RNAX-ray diffraction1.72022-03-23
356ZXZ|1|ASarcin-Ricin Loop RNA from Ecoli with a A2670-2'-OCF3 modificationsynthetic constructSarcin-Ricin Loop RNA from Ecoli with a A2670-2'-OCF3 modificationX-ray diffraction2.442020-12-16
366ZXZ|1|CSarcin-Ricin Loop RNA from Ecoli with a A2670-2'-OCF3 modificationsynthetic constructSarcin-Ricin Loop RNA from Ecoli with a A2670-2'-OCF3 modificationX-ray diffraction2.442020-12-16
371JBS|1|C29-mer sarcin/ricin domain RNA analogCrystal structure of ribotoxin restrictocin and a 29-mer SRD RNA analogX-ray diffraction1.972001-10-26

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLength
17EEN|1|BBulged-G motif composed of RNA, DNA and 2'-O-methyl RNAX-RAY DIFFRACTION1.715
27EEN|1|ABulged-G motif composed of RNA, DNA and 2'-O-methyl RNAX-RAY DIFFRACTION1.714
37EEN|1|CBulged-G motif composed of RNA, DNA and 2'-O-methyl RNAX-RAY DIFFRACTION1.714
47EEN|1|DBulged-G motif composed of RNA, DNA and 2'-O-methyl RNAX-RAY DIFFRACTION1.714
56ZXZ|1|BSarcin-Ricin Loop RNA from Ecoli with a A2670-2'-OCF3 modificationX-RAY DIFFRACTION2.4425
66ZXZ|1|CSarcin-Ricin Loop RNA from Ecoli with a A2670-2'-OCF3 modificationX-RAY DIFFRACTION2.4425
76ZXZ|1|ASarcin-Ricin Loop RNA from Ecoli with a A2670-2'-OCF3 modificationX-RAY DIFFRACTION2.4425
84Y27|1|AE.coli 23S Sarcin-Ricil Loop, modified with a 2-Me on G2661 and a methylphosphonate on A2662X-RAY DIFFRACTION125
97JJF|1|ASarcin-ricin loop with modified residue.X-RAY DIFFRACTION1.227
105NQI|1|AE.coli 16S rRNA Sarcin-Ricin Loop containing a 5-hydroxymethylcytosine modificationX-RAY DIFFRACTION0.8534
115MRX|1|A27-nt SRL with a 5-hydroxymethyl cytidine modificationX-RAY DIFFRACTION0.8534
12483D|1|ACRYSTAL STRUCTURE OF THE SARCIN/RICIN DOMAIN FROM E. COLI 23 S RRNAX-RAY DIFFRACTION1.1139
131Q9A|1|ACrystal structure of the sarcin/ricin domain from E.coli 23S rRNA at 1.04 resolutionX-RAY DIFFRACTION1.0438
143DW7|1|ACrystal Structure of the Sarcin/Ricin Domain from E. COLI 23 S rRNA, U2656-SeCH3 modifiedX-RAY DIFFRACTION137
154NMG|1|A2'-Trifluoromethylthio-2'-deoxyuridine-modified SRLX-RAY DIFFRACTION1.0136
167M3V|1|ARNA bulged-G motifX-RAY DIFFRACTION2.1927
176ZYB|1|ASarcin-Ricin Loop RNA from Ecoli with a C2667-2'-OCF3 modificationX-RAY DIFFRACTION0.930
187JJE|1|ASarcin-ricin loop with guanosine dithiophosphate residue.X-RAY DIFFRACTION1.2529
193DVZ|1|ACrystal Structure of the Sarcin/Ricin Domain from E. coli 23 S rRNAX-RAY DIFFRACTION135
207JJD|1|ASarcin-ricin loop with guanosine monothiophosphate residue.X-RAY DIFFRACTION1.2129
213S8U|1|ACrystal structure of a 2-azido-adenine-modified RNAX-RAY DIFFRACTION1.234
227L3R|1|A23S Sarcin Ricin Loop with a 3-deazapurine A2670X-RAY DIFFRACTION1.0130
233DW5|1|ACrystal Structure of the Sarcin/Ricin Domain from E. COLI 23S rRNA, U2656-OCH3 modifiedX-RAY DIFFRACTION0.9632
244NXH|1|A2'-Trifluoromethylthiouridine-modified E. coli 23S rRNA Sarcin Ricin LoopX-RAY DIFFRACTION1.1632
255D99|1|A3DW4 redetermined by direct methods starting from random phase anglesX-RAY DIFFRACTION0.9730
263DW4|1|ACrystal Structure of the Sarcin/Ricin Domain from E. COLI 23 S rRNA, U2650-OCH3 modifiedX-RAY DIFFRACTION0.9726
273DW6|1|ACrystal Structure of the Sarcin/Ricin Domain from E. COLI 23 S rRNA, U2650-SECH3 modifiedX-RAY DIFFRACTION128
283S7C|1|ACrystal structure of a 2'-azido-uridine-modified RNAX-RAY DIFFRACTION1.132
29480D|1|ACRYSTAL STRUCTURE OF THE SARCIN/RICIN DOMAIN FROM E. COLI 23 S RRNAX-RAY DIFFRACTION1.527
304NLF|1|A2'-trifluoromethylthio-2'-deoxycytidine-modified SRLX-RAY DIFFRACTION128
316Y0T|1|BSarcin Ricin Loop, mutant C2666A U2653G C2667AX-RAY DIFFRACTION1.39330
326Y0T|1|ASarcin Ricin Loop, mutant C2666A U2653G C2667AX-RAY DIFFRACTION1.39330
336Y0Y|1|ASarcin Ricin Loop, mutant C2666UX-RAY DIFFRACTION0.9527
341MSY|1|AGUAA tetraloop mutant of Sarcin/Ricin domain from E. Coli 23 S rRNAX-RAY DIFFRACTION1.4131
351JBS|1|DCrystal structure of ribotoxin restrictocin and a 29-mer SRD RNA analogX-RAY DIFFRACTION1.9717
361JBS|1|CCrystal structure of ribotoxin restrictocin and a 29-mer SRD RNA analogX-RAY DIFFRACTION1.9717
371JBR|1|DCrystal Structure of the Ribotoxin Restrictocin and a 31-mer SRD RNA InhibitorX-RAY DIFFRACTION2.1531

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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