Equivalence class NR_20.0_05217.2 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 3HOY|1|P (rep) | 5'-R(*UP*AP*UP*AP*UP*GP*CP*A*UP*AP*AP*AP*GP*AP*CP*CP*AP*GP*GP*A)-3' | Complete RNA polymerase II elongation complex VI | X-ray diffraction | 3.4 | 2009-07-28 | ||||
| 2 | 5FLM|1|P | RNA, DNA-RNA ELONGATION SCAFFOLD | synthetic construct | Structure of transcribing mammalian RNA polymerase II | Electron microscopy | 3.4 | 2016-01-20 | |||
| 3 | 6EXV|1|P | RNA (5'-R(P*CP*AP*UP*AP*AP*AP*GP*AP*CP*CP*AP*GP*GP*C)-3') | synthetic construct | Structure of mammalian RNA polymerase II elongation complex inhibited by Alpha-amanitin | Electron microscopy | 3.6 | 2018-03-21 | |||
| 4 | 6HLR|1|R | RNA | Saccharomyces cerevisiae | Yeast RNA polymerase I elongation complex bound to nucleotide analog GMPCPP (core focused) | Electron microscopy | 3.18 | 2019-04-03 | |||
| 5 | 6HLQ|1|R | RNA | Saccharomyces cerevisiae | Yeast RNA polymerase I* elongation complex bound to nucleotide analog GMPCPP | Electron microscopy | 3.18 | 2019-04-03 | |||
| 6 | 5M5X|1|R | RNA | Saccharomyces cerevisiae | RNA Polymerase I elongation complex 1 | Electron microscopy | 4 | 2016-12-21 | |||
| 7 | 6HKO|1|R | RNA | Saccharomyces cerevisiae | Yeast RNA polymerase I elongation complex bound to nucleotide analog GMPCPP | Electron microscopy | 3.42 | 2019-04-03 | |||
| 8 | 5M3F|1|R | RNA | Saccharomyces cerevisiae | Yeast RNA polymerase I elongation complex at 3.8A | Electron microscopy | 3.8 | 2016-11-23 |
Release history
| Release | 3.75 | 3.76 | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 | 3.88 | 3.89 | 3.90 | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 | 3.96 | 3.97 | 3.98 | 3.99 | 3.100 | 3.101 | 3.102 | 3.103 | 3.104 | 3.105 | 3.106 | 3.107 | 3.108 | 3.109 | 3.110 | 3.111 | 3.112 | 3.113 | 3.114 | 3.115 | 3.116 | 3.117 | 3.118 | 3.119 | 3.120 | 3.121 | 3.122 | 3.123 | 3.124 | 3.125 | 3.126 | 3.127 | 3.128 | 3.129 | 3.130 | 3.131 | 3.132 | 3.133 | 3.134 | 3.135 | 3.136 | 3.137 | 3.138 | 3.139 | 3.140 | 3.141 | 3.142 | 3.143 | 3.144 | 3.145 | 3.146 | 3.147 | 3.148 | 3.149 | 3.150 | 3.151 | 3.152 | 3.153 | 3.154 | 3.155 | 3.156 | 3.157 | 3.158 | 3.159 | 3.160 | 3.161 | 3.162 | 3.163 | 3.164 | 3.165 | 3.166 |
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| Date | 2019-05-24 | 2019-05-31 | 2019-06-07 | 2019-06-14 | 2019-06-21 | 2019-06-28 | 2019-07-05 | 2019-07-12 | 2019-07-19 | 2019-07-26 | 2019-08-02 | 2019-08-09 | 2019-08-16 | 2019-08-23 | 2019-08-28 | 2019-09-04 | 2019-09-11 | 2019-09-19 | 2019-09-25 | 2019-10-03 | 2019-10-09 | 2019-10-16 | 2019-10-23 | 2019-10-30 | 2019-11-06 | 2019-11-13 | 2019-11-20 | 2019-11-27 | 2019-12-04 | 2019-12-11 | 2019-12-18 | 2019-12-25 | 2020-01-01 | 2020-01-08 | 2020-01-15 | 2020-01-22 | 2020-01-29 | 2020-02-05 | 2020-02-12 | 2020-02-19 | 2020-02-26 | 2020-03-04 | 2020-03-11 | 2020-03-18 | 2020-03-25 | 2020-04-01 | 2020-04-08 | 2020-04-15 | 2020-04-22 | 2020-04-29 | 2020-05-06 | 2020-05-13 | 2020-05-20 | 2020-05-27 | 2020-06-03 | 2020-06-10 | 2020-06-17 | 2020-06-24 | 2020-07-01 | 2020-07-08 | 2020-07-15 | 2020-07-22 | 2020-07-29 | 2020-08-05 | 2020-08-12 | 2020-08-19 | 2020-08-26 | 2020-09-02 | 2020-09-09 | 2020-09-16 | 2020-09-23 | 2020-09-30 | 2020-10-07 | 2020-10-14 | 2020-10-21 | 2020-10-28 | 2020-11-04 | 2020-11-11 | 2020-11-18 | 2020-11-25 | 2020-12-02 | 2020-12-09 | 2020-12-16 | 2020-12-23 | 2020-12-30 | 2021-01-06 | 2021-01-13 | 2021-01-20 | 2021-01-27 | 2021-02-03 | 2021-02-10 | 2021-02-17 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_20.0_05217.2 | NR_20.0_05217.1 | 3.75 | (7) 5FLM|1|P, 5M3F|1|R, 5M5X|1|R, 6EXV|1|P, 6HKO|1|R, 6HLQ|1|R, 6HLR|1|R | (1) 3HOY|1|P | (0) |
| NR_20.0_05217.2 | NR_20.0_40852.1 | 3.75 | (1) 3HOY|1|P | (7) 5FLM|1|P, 5M3F|1|R, 5M5X|1|R, 6EXV|1|P, 6HKO|1|R, 6HLQ|1|R, 6HLR|1|R | (0) |
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 3HOY|1|P | Complete RNA polymerase II elongation complex VI | X-RAY DIFFRACTION | 3.4 | 10 | |
| 2 | 6HLQ|1|R | Yeast RNA polymerase I* elongation complex bound to nucleotide analog GMPCPP | ELECTRON MICROSCOPY | 3.18 | 9 | |
| 3 | 6HLR|1|R | Yeast RNA polymerase I elongation complex bound to nucleotide analog GMPCPP (core focused) | ELECTRON MICROSCOPY | 3.18 | 9 | |
| 4 | 6HKO|1|R | Yeast RNA polymerase I elongation complex bound to nucleotide analog GMPCPP | ELECTRON MICROSCOPY | 3.42 | 9 | |
| 5 | 6EXV|1|P | Structure of mammalian RNA polymerase II elongation complex inhibited by Alpha-amanitin | ELECTRON MICROSCOPY | 3.6 | 14 | |
| 6 | 5FLM|1|P | Structure of transcribing mammalian RNA polymerase II | ELECTRON MICROSCOPY | 3.4 | 14 | |
| 7 | 5M3F|1|R | Yeast RNA polymerase I elongation complex at 3.8A | ELECTRON MICROSCOPY | 3.8 | 8 | |
| 8 | 5M5X|1|R | RNA Polymerase I elongation complex 1 | ELECTRON MICROSCOPY | 4 | 13 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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