Equivalence class NR_20.0_12111.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6D8A|1|C (rep) | RNA (5'-R(P*UP*UP*AP*CP*UP*GP*CP*AP*CP*AP*GP*GP*UP*GP*AP*CP*GP*A)-3') | Rhodobacter sphaeroides | RsAgo Ternary Complex with guide RNA and Target DNA Containing A-A Bulge Within the Seed Segment of the Target Strand | X-ray diffraction | 2.25 | 2018-07-25 | |||
| 2 | 6D92|1|C | RNA (5'-R(P*UP*UP*AP*CP*UP*GP*CP*AP*CP*AP*GP*GP*UP*GP*AP*CP*GP*A)-3') | Rhodobacter sphaeroides | Ternary RsAgo Complex with Guide RNA and Target DNA Containing A-A non-canonical pair at position 3 | X-ray diffraction | 1.81 | 2018-07-25 | |||
| 3 | 6D92|1|H | RNA (5'-R(P*UP*UP*AP*CP*UP*GP*CP*AP*CP*AP*GP*GP*UP*GP*AP*CP*GP*A)-3') | Rhodobacter sphaeroides | Ternary RsAgo Complex with Guide RNA and Target DNA Containing A-A non-canonical pair at position 3 | X-ray diffraction | 1.81 | 2018-07-25 | |||
| 4 | 6D8P|1|E | RNA (5'-R(P*UP*UP*AP*CP*UP*GP*CP*AP*CP*AP*GP*GP*UP*GP*AP*CP*GP*A)-3') | Rhodobacter sphaeroides | Ternary RsAgo Complex Containing Guide RNA Paired with Target DNA | X-ray diffraction | 2.1 | 2018-07-25 | |||
| 5 | 6D8P|1|C | RNA (5'-R(P*UP*UP*AP*CP*UP*GP*CP*AP*CP*AP*GP*GP*UP*GP*AP*CP*GP*A)-3') | Rhodobacter sphaeroides | Ternary RsAgo Complex Containing Guide RNA Paired with Target DNA | X-ray diffraction | 2.1 | 2018-07-25 | |||
| 6 | 6D8A|1|H | RNA (5'-R(P*UP*UP*AP*CP*UP*GP*CP*AP*CP*AP*GP*GP*UP*GP*AP*CP*GP*A)-3') | Rhodobacter sphaeroides | RsAgo Ternary Complex with guide RNA and Target DNA Containing A-A Bulge Within the Seed Segment of the Target Strand | X-ray diffraction | 2.25 | 2018-07-25 | |||
| 7 | 6D9K|1|H | RNA (5'-R(P*UP*UP*AP*CP*UP*GP*CP*AP*CP*AP*GP*GP*UP*GP*AP*CP*GP*A)-3') | Rhodobacter sphaeroides | Ternary RsAgo Complex with Guide RNA and Target DNA Containing A-G Non-canonical Pair | X-ray diffraction | 2 | 2018-07-25 | |||
| 8 | 6D9K|1|C | RNA (5'-R(P*UP*UP*AP*CP*UP*GP*CP*AP*CP*AP*GP*GP*UP*GP*AP*CP*GP*A)-3') | Rhodobacter sphaeroides | Ternary RsAgo Complex with Guide RNA and Target DNA Containing A-G Non-canonical Pair | X-ray diffraction | 2 | 2018-07-25 | |||
| 9 | 6D8F|1|C | RNA (5'-R(P*UP*UP*AP*CP*UP*GP*CP*AP*CP*AP*GP*GP*UP*GP*AP*CP*GP*A)-3') | Rhodobacter sphaeroides | RsAgo Ternary Complex with Guide RNA and Target DNA Containing T-T Bulge Within the Seed Segment | X-ray diffraction | 2.15 | 2018-07-25 | |||
| 10 | 6D8F|1|H | RNA (5'-R(P*UP*UP*AP*CP*UP*GP*CP*AP*CP*AP*GP*GP*UP*GP*AP*CP*GP*A)-3') | Rhodobacter sphaeroides | RsAgo Ternary Complex with Guide RNA and Target DNA Containing T-T Bulge Within the Seed Segment | X-ray diffraction | 2.15 | 2018-07-25 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 6D92|1|C | Ternary RsAgo Complex with Guide RNA and Target DNA Containing A-A non-canonical pair at position 3 | X-RAY DIFFRACTION | 1.81 | 18 | |
| 2 | 6D8A|1|C | RsAgo Ternary Complex with guide RNA and Target DNA Containing A-A Bulge Within the Seed Segment of the Target Strand | X-RAY DIFFRACTION | 2.25 | 18 | |
| 3 | 6D8F|1|C | RsAgo Ternary Complex with Guide RNA and Target DNA Containing T-T Bulge Within the Seed Segment | X-RAY DIFFRACTION | 2.15 | 18 | |
| 4 | 6D8P|1|E | Ternary RsAgo Complex Containing Guide RNA Paired with Target DNA | X-RAY DIFFRACTION | 2.1 | 18 | |
| 5 | 6D9K|1|C | Ternary RsAgo Complex with Guide RNA and Target DNA Containing A-G Non-canonical Pair | X-RAY DIFFRACTION | 2 | 18 | |
| 6 | 6D9K|1|H | Ternary RsAgo Complex with Guide RNA and Target DNA Containing A-G Non-canonical Pair | X-RAY DIFFRACTION | 2 | 18 | |
| 7 | 6D8P|1|C | Ternary RsAgo Complex Containing Guide RNA Paired with Target DNA | X-RAY DIFFRACTION | 2.1 | 18 | |
| 8 | 6D8F|1|H | RsAgo Ternary Complex with Guide RNA and Target DNA Containing T-T Bulge Within the Seed Segment | X-RAY DIFFRACTION | 2.15 | 18 | |
| 9 | 6D8A|1|H | RsAgo Ternary Complex with guide RNA and Target DNA Containing A-A Bulge Within the Seed Segment of the Target Strand | X-RAY DIFFRACTION | 2.25 | 18 | |
| 10 | 6D92|1|H | Ternary RsAgo Complex with Guide RNA and Target DNA Containing A-A non-canonical pair at position 3 | X-RAY DIFFRACTION | 1.81 | 18 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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