#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
16EM3|1|2 (rep)5.8S ribosomal RNA5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00002State A architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomesElectron microscopy3.22017-12-27
26EM4|1|25.8S ribosomal RNASaccharomyces cerevisiae genomic DNA sequence contains ITS1, 5.8S rRNA gene, ITS2, strain IMA 105YSaccharomyces cerevisiaeEukaryaRF00002State B architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomesElectron microscopy4.12017-12-27
36EM5|1|25.8S ribosomal RNA5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00002State D architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomesElectron microscopy4.32017-12-27
46I7O|1|BS5.8S ribosomal RNA5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00002The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.Electron microscopy5.32019-01-16
56I7O|1|YS5.8S ribosomal RNA5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00002The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.Electron microscopy5.32019-01-16
64V7F|1|25.8S ribosomal RNA5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00002Arx1 pre-60S particle.Electron microscopy8.72014-07-09
75FL8|1|y5.8S ribosomal RNA5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00002CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLEElectron microscopy9.52015-12-02
85JCS|1|y5.8S ribosomal RNA5.8S ribosomal RNASaccharomyces cerevisiaeEukaryaRF00002CRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLEElectron microscopy9.52016-11-16

Release history

Release3.1523.1533.1543.1553.1563.1573.1583.1593.1603.1613.1623.1633.1643.1653.1663.1673.1683.1693.1703.1713.1723.1733.1743.1753.1763.1773.1783.1793.1803.1813.1823.1833.1843.1853.1863.1873.1883.1893.1903.1913.1923.1933.1943.1953.1963.1973.1983.1993.2003.2013.2023.2033.2043.2053.2063.2073.2083.2093.2103.2113.2123.2133.2143.2153.2163.2173.2183.2193.2203.2213.2223.2233.2243.2253.2263.2273.2283.2293.2303.2313.2323.2333.2343.2353.2363.2373.2383.2393.2403.2413.2423.2433.2443.2453.2463.2473.2483.2493.2503.2513.2523.2533.2543.2553.2563.2573.2583.2593.2603.2613.2623.2633.2643.2653.2663.2673.2683.269
Date2020-11-112020-11-182020-11-252020-12-022020-12-092020-12-162020-12-232020-12-302021-01-062021-01-132021-01-202021-01-272021-02-032021-02-102021-02-172021-02-242021-03-032021-03-102021-03-172021-03-242021-03-312021-04-072021-04-142021-04-212021-04-282021-05-052021-05-122021-05-192021-05-262021-06-022021-06-092021-06-162021-06-232021-06-302021-07-072021-07-142021-07-212021-07-282021-08-042021-08-112021-08-182021-08-252021-09-012021-09-082021-09-152021-09-222021-09-292021-10-062021-10-132021-10-202021-10-272021-11-032021-11-102021-11-172021-11-242021-12-012021-12-082021-12-152021-12-222021-12-292022-01-052022-01-122022-01-192022-01-262022-02-022022-02-092022-02-162022-02-232022-03-022022-03-092022-03-162022-03-232022-03-302022-04-062022-04-132022-04-202022-04-272022-05-042022-05-112022-05-182022-05-252022-06-012022-06-082022-06-152022-06-222022-06-292022-07-062022-07-132022-07-202022-07-272022-08-032022-08-102022-08-172022-08-242022-08-312022-09-072022-09-142022-09-212022-09-282022-10-052022-10-122022-10-192022-10-262022-11-022022-11-092022-11-162022-11-232022-11-302022-12-072022-12-142022-12-212022-12-282023-01-042023-01-112023-01-182023-01-252023-02-012023-02-08

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_20.0_13071.1NR_20.0_61239.13.152(5) 4V7F|1|2, 5FL8|1|y, 5JCS|1|y, 6I7O|1|BS, 6I7O|1|YS(3) 6EM3|1|2, 6EM4|1|2, 6EM5|1|2(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_20.0_13071.1NR_20.0_13071.23.270(7) 4V7F|1|2, 5JCS|1|y, 6EM3|1|2, 6EM4|1|2, 6EM5|1|2, 6I7O|1|BS, 6I7O|1|YS(1) 5FL8|1|y(0)

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLength
16EM3|1|2State A architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomesELECTRON MICROSCOPY3.2157
25FL8|1|yCRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLEELECTRON MICROSCOPY9.5158
35JCS|1|yCRYO-EM STRUCTURE OF THE RIX1-REA1 PRE-60S PARTICLEELECTRON MICROSCOPY9.5158
46I7O|1|YSThe structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.ELECTRON MICROSCOPY5.3157
56I7O|1|BSThe structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition.ELECTRON MICROSCOPY5.3157
66EM5|1|2State D architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomesELECTRON MICROSCOPY4.3158
74V7F|1|2Arx1 pre-60S particle.ELECTRON MICROSCOPY8.7158
86EM4|1|2State B architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomesELECTRON MICROSCOPY4.1158

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


Coloring options:

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