Equivalence class NR_20.0_18337.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 3J0E|1|A (rep) | ribosomal 23S RNA | Escherichia coli | Models for the T. thermophilus ribosome recycling factor and the E. coli elongation factor G bound to the E. coli post-termination complex | Electron microscopy | 9.9 | 2012-04-25 | |||
| 2 | 3J0D|1|B | ribosomal 23S RNA | Escherichia coli | Models for the T. thermophilus ribosome recycling factor bound to the E. coli post-termination complex | Electron microscopy | 11.1 | 2012-04-25 | |||
| 3 | 1QZC|1|B | 23S rRNA | Escherichia coli | Coordinates of S12, SH44, LH69 and SRL separately fitted into the cryo-EM map of EF-Tu ternary complex (GDP.Kirromycin) bound 70S ribosome | Electron microscopy | 9 | 2003-11-04 | |||
| 4 | 1T1O|1|B | 19-mer fragment of the 23S rRNA | Escherichia coli | Components of the control 70S ribosome to provide reference for the RRF binding site | Electron microscopy | 12 | 2004-06-15 | |||
| 5 | 1MVR|1|C | Helix 69 of 23S rRNA | Escherichia coli | Decoding Center & Peptidyl transferase center from the X-ray structure of the Thermus thermophilus 70S ribosome, aligned to the low resolution Cryo-EM map of E.coli 70S Ribosome | Electron microscopy | 12.8 | 2003-04-01 |
Release history
| Release | 2.93 | 2.94 | 2.95 | 2.96 | 2.97 | 2.98 | 2.99 | 2.100 | 2.101 | 2.102 | 2.103 | 2.104 | 2.105 | 2.106 | 2.107 | 2.108 | 2.109 | 2.110 | 2.111 | 2.112 | 2.113 | 2.114 | 2.115 | 2.116 | 2.117 | 2.118 | 2.119 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2016-09-16 | 2016-09-23 | 2016-09-30 | 2016-10-07 | 2016-10-14 | 2016-10-21 | 2016-10-28 | 2016-11-04 | 2016-11-11 | 2016-11-18 | 2016-11-25 | 2016-12-02 | 2016-12-09 | 2016-12-16 | 2016-12-23 | 2016-12-30 | 2017-01-06 | 2017-01-13 | 2017-01-20 | 2017-01-27 | 2017-02-03 | 2017-02-10 | 2017-02-17 | 2017-02-24 | 2017-03-03 | 2017-03-10 | 2017-03-17 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_20.0_18337.1 | NR_20.0_21404.1 | 2.93 | (1) 1QZC|1|B | (4) 1MVR|1|C, 1T1O|1|B, 3J0D|1|B, 3J0E|1|A | (0) |
| NR_20.0_18337.1 | NR_20.0_51389.1 | 2.93 | (2) 3J0D|1|B, 3J0E|1|A | (3) 1MVR|1|C, 1QZC|1|B, 1T1O|1|B | (0) |
| NR_20.0_18337.1 | NR_20.0_86102.1 | 2.93 | (2) 1MVR|1|C, 1T1O|1|B | (3) 1QZC|1|B, 3J0D|1|B, 3J0E|1|A | (0) |
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 1T1O|1|B | Components of the control 70S ribosome to provide reference for the RRF binding site | ELECTRON MICROSCOPY | 12 | 19 | |
| 2 | 3J0D|1|B | Models for the T. thermophilus ribosome recycling factor bound to the E. coli post-termination complex | ELECTRON MICROSCOPY | 11.1 | 22 | |
| 3 | 1QZC|1|B | Coordinates of S12, SH44, LH69 and SRL separately fitted into the cryo-EM map of EF-Tu ternary complex (GDP.Kirromycin) bound 70S ribosome | ELECTRON MICROSCOPY | 9 | 20 | |
| 4 | 3J0E|1|A | Models for the T. thermophilus ribosome recycling factor and the E. coli elongation factor G bound to the E. coli post-termination complex | ELECTRON MICROSCOPY | 9.9 | 22 | |
| 5 | 1MVR|1|C | Decoding Center & Peptidyl transferase center from the X-ray structure of the Thermus thermophilus 70S ribosome, aligned to the low resolution Cryo-EM map of E.coli 70S Ribosome | ELECTRON MICROSCOPY | 12.8 | 19 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
Coloring options: