#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
14YCO|1|D (rep)Transfer RNAtRNApheEscherichia coliBacteriaRF00005E. coli dihydrouridine synthase C (DusC) in complex with tRNAPheX-ray diffraction2.12015-04-22
24YCO|1|ETransfer RNAtRNApheEscherichia coliBacteriaRF00005E. coli dihydrouridine synthase C (DusC) in complex with tRNAPheX-ray diffraction2.12015-04-22
34YCO|1|FTransfer RNAtRNApheEscherichia coliBacteriaRF00005E. coli dihydrouridine synthase C (DusC) in complex with tRNAPheX-ray diffraction2.12015-04-22
43FOZ|1|CtRNA(Phe)Structure of E. coli Isopentenyl-tRNA transferase in complex with E. coli tRNA(Phe)X-ray diffraction2.52009-01-20
54WOI|1|DWTransfer RNAMessenger RNA, Phenylalanine specific transfer RNA, tRNA-PheEscherichia coliBacteriaRF000054,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2X-ray diffraction32015-08-05
65NDK|1|X1Transfer RNAmRNA, tRNA-PheEscherichia coliBacteriaRF00005Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNAX-ray diffraction2.952017-12-13
74V9H|1|AVTransfer RNAmRNA, PE hybrid state tRNA PheEscherichia coliBacteriaRF00005Crystal structure of the ribosome bound to elongation factor G in the guanosine triphosphatase stateX-ray diffraction2.862014-07-09
83L0U|1|ATransfer RNAUnmodified tRNAPheEscherichia coliBacteriaRF00005The crystal structure of unmodified tRNAPhe from Escherichia coliX-ray diffraction32010-03-16
92ZM5|1|CTransfer RNAtRNA(Phe)Escherichia coliBacteriaRF00005Crystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe)X-ray diffraction2.552009-04-14
105NDK|1|X4Transfer RNAmRNA, tRNA-PheEscherichia coliBacteriaRF00005Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNAX-ray diffraction2.952017-12-13
114V5R|1|CVTransfer RNAE-SITE TRNA PHE OR P-SITE TRNA PHE, MRNAEscherichia coliBacteriaRF00005The crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome.X-ray diffraction3.12014-07-09
124V9D|1|BVTransfer RNAmessenger RNA, phenylalanine specific transfer RNAEscherichia coliBacteriaRF00005Structures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-ray diffraction32014-07-09
134V5R|1|AVTransfer RNAE-SITE TRNA PHE OR P-SITE TRNA PHE, MRNAEscherichia coliBacteriaRF00005The crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome.X-ray diffraction3.12014-07-09
144V5P|1|AVTransfer RNAE-SITE TRNA PHE OR P-SITE TRNA PHE, MRNAEscherichia coliBacteriaRF00005The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosomeX-ray diffraction3.12014-07-09
154V5P|1|CVTransfer RNAE-SITE TRNA PHE OR P-SITE TRNA PHE, MRNAEscherichia coliBacteriaRF00005The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosomeX-ray diffraction3.12014-07-09
162ZXU|1|CTransfer RNAtRNA(Phe)Escherichia coliBacteriaRF00005Crystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe) and DMASPPX-ray diffraction2.752009-05-26
174V6F|1|CCTransfer RNAMRNA, TRNA-PHE WITH UNMODIFIED NUCLEOTIDES EXCEPT FOR MIA37Escherichia coliBacteriaRF00005Elongation complex of the 70S ribosome with three tRNAs and mRNA.X-ray diffraction3.12014-07-09
185NDJ|1|X1Transfer RNAmRNA, tRNA-PheEscherichia coliBacteriaRF00005Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)X-ray diffraction3.152018-05-02
193FOZ|1|DtRNA(Phe)Structure of E. coli Isopentenyl-tRNA transferase in complex with E. coli tRNA(Phe)X-ray diffraction2.52009-01-20
205NDJ|1|X4Transfer RNAmRNA, tRNA-PheEscherichia coliBacteriaRF00005Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)X-ray diffraction3.152018-05-02
214V5S|1|CVTransfer RNAE-SITE TRNA PHE OR P-SITE TRNA PHE, MRNAEscherichia coliBacteriaRF00005The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome.X-ray diffraction3.12014-07-09
224WQU|1|BWTransfer RNAmRNA, P-site tRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycinX-ray diffraction2.82015-01-28
234W2E|1|wTransfer RNAmRNA, P-site tRNAEscherichia coliBacteriaRF00005Crystal structure of Elongation Factor 4 (EF4/LepA) bound to the Thermus thermophilus 70S ribosomeX-ray diffraction2.92014-10-01
244V5Q|1|AVTransfer RNAE-SITE TRNA PHE OR P-SITE TRNA PHE, MRNAEscherichia coliBacteriaRF00005The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosomeX-ray diffraction3.12014-07-09
254V5S|1|AVTransfer RNAE-SITE TRNA PHE OR P-SITE TRNA PHE, MRNAEscherichia coliBacteriaRF00005The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome.X-ray diffraction3.12014-07-09
264V5E|1|CVTransfer RNAE-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES), MRNAEscherichia coliBacteriaRF00005Insights into translational termination from the structure of RF2 bound to the ribosomeX-ray diffraction3.452014-07-09
274WQF|1|BWTransfer RNAmRNA, P-site tRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational stateX-ray diffraction2.82015-01-28
286C5L|1|AVTransfer RNAE-site tRNA PHE OR P-site tRNA PHE (unmodified bases), mRNAEscherichia coliBacteriaRF00005Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)X-ray diffraction3.22018-02-21
295J4B|1|1yTransfer RNAA-site and E-site tRNAsEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolutionX-ray diffraction2.62016-04-27
306CFJ|1|1wTransfer RNAA-site and E-site tRNAs, mRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolutionX-ray diffraction2.82018-03-07
314V5E|1|AVTransfer RNAE-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES), MRNAEscherichia coliBacteriaRF00005Insights into translational termination from the structure of RF2 bound to the ribosomeX-ray diffraction3.452014-07-09
325W4K|1|1yTransfer RNAtRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolutionX-ray diffraction2.72017-08-30
334V5J|1|CVTransfer RNAE-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES), MRNAEscherichia coliBacteriaRF00005Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide releaseX-ray diffraction3.12014-07-09
344V5Q|1|CVTransfer RNAE-SITE TRNA PHE OR P-SITE TRNA PHE, MRNAEscherichia coliBacteriaRF00005The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosomeX-ray diffraction3.12014-07-09
356C5L|1|CVTransfer RNAE-site tRNA PHE OR P-site tRNA PHE (unmodified bases), mRNAEscherichia coliBacteriaRF00005Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)X-ray diffraction3.22018-02-21
365WIT|1|1wTransfer RNAA-site tRNA, mRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolutionX-ray diffraction2.62018-02-14
376CFJ|1|1yTransfer RNAA-site and E-site tRNAsEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolutionX-ray diffraction2.82018-03-07
386CFJ|1|2wTransfer RNAA-site and E-site tRNAs, mRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolutionX-ray diffraction2.82018-03-07
395J4C|1|1wTransfer RNAA-site and E-site tRNAs, mRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (soaked) and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolutionX-ray diffraction2.82016-04-27
404V6F|1|BCTransfer RNAMRNA, TRNA-PHE WITH UNMODIFIED NUCLEOTIDES EXCEPT FOR MIA37Escherichia coliBacteriaRF00005Elongation complex of the 70S ribosome with three tRNAs and mRNA.X-ray diffraction3.12014-07-09
415WIS|1|1yTransfer RNAA-site and E-site tRNAsEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with methymycin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolutionX-ray diffraction2.72018-02-14
425J4C|1|1yTransfer RNAA-site and E-site tRNAsEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (soaked) and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolutionX-ray diffraction2.82016-04-27
434WQU|1|DWTransfer RNAmRNA, P-site tRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycinX-ray diffraction2.82015-01-28
444V5D|1|CVTransfer RNAMRNA, P AND A-SITE PHE-TRNA PHEEscherichia coliBacteriaRF00005Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.X-ray diffraction3.52014-07-09
454V5D|1|AVTransfer RNAMRNA, P AND A-SITE PHE-TRNA PHEEscherichia coliBacteriaRF00005Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.X-ray diffraction3.52014-07-09
466CFJ|1|2yTransfer RNAA-site and E-site tRNAsEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolutionX-ray diffraction2.82018-03-07
475WIS|1|1wTransfer RNAA-site and E-site tRNAs, mRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with methymycin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolutionX-ray diffraction2.72018-02-14
484WT1|1|1KTransfer RNAmRNA, tRNA-PheEscherichia coliBacteriaRF00005Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-siteX-ray diffraction3.052015-06-10
495J4B|1|1wTransfer RNAA-site and E-site tRNAs, mRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolutionX-ray diffraction2.62016-04-27
505NDK|1|W1Transfer RNAmRNA, tRNA-PheEscherichia coliBacteriaRF00005Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNAX-ray diffraction2.952017-12-13
514V51|1|AWTransfer RNAE-SITE TRNA PHE OR A-SITE TRNA PHE (UNMODIFIED BASES)Escherichia coliBacteriaRF00005Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycinX-ray diffraction2.82014-07-09
524WT1|1|3KTransfer RNAtRNA-PheEscherichia coliBacteriaRF00005Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-siteX-ray diffraction3.052015-06-10
535J4C|1|2wTransfer RNAA-site and E-site tRNAs, mRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (soaked) and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolutionX-ray diffraction2.82016-04-27
544V5J|1|AVTransfer RNAE-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES), MRNAEscherichia coliBacteriaRF00005Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide releaseX-ray diffraction3.12014-07-09
554WQF|1|DWTransfer RNAmRNA, P-site tRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational stateX-ray diffraction2.82015-01-28
564V9C|1|AVTransfer RNAMessenger RNA, mRNA, Phenylalanine specific transfer RNA, tRNA-PheEscherichia coliBacteriaRF00005Allosteric control of the ribosome by small-molecule antibioticsX-ray diffraction3.32014-07-09
575J4B|1|2wTransfer RNAA-site and E-site tRNAs, mRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolutionX-ray diffraction2.62016-04-27
585J4B|1|2yTransfer RNAA-site and E-site tRNAsEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolutionX-ray diffraction2.62016-04-27
595J4C|1|2yTransfer RNAA-site and E-site tRNAsEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (soaked) and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolutionX-ray diffraction2.82016-04-27
605W4K|1|1wTransfer RNAmRNA, tRNA, A-site and E-site tRNAsEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolutionX-ray diffraction2.72017-08-30
615NDK|1|W4Transfer RNAmRNA, tRNA-PheEscherichia coliBacteriaRF00005Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNAX-ray diffraction2.952017-12-13
624WOI|1|AXTransfer RNAMessenger RNA, Phenylalanine specific transfer RNA, tRNA-PheEscherichia coliBacteriaRF000054,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2X-ray diffraction32015-08-05
634WQR|1|3KTransfer RNAtRNA-PheEscherichia coliBacteriaRF00005Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site.X-ray diffraction3.152015-06-10
644W2G|1|AWTransfer RNAA/P-site tRNA, mRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sitesX-ray diffraction2.552014-10-15
655WIS|1|2yTransfer RNAA-site and E-site tRNAsEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with methymycin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolutionX-ray diffraction2.72018-02-14
665WIT|1|2wTransfer RNAA-site tRNA, mRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolutionX-ray diffraction2.62018-02-14
675DOY|1|1yTransfer RNAA-site and E-site tRNAsEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolutionX-ray diffraction2.62015-12-30
685W4K|1|2yTransfer RNAtRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolutionX-ray diffraction2.72017-08-30
692ZM5|1|DTransfer RNAtRNA(Phe)Escherichia coliBacteriaRF00005Crystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe)X-ray diffraction2.552009-04-14
704V9D|1|AVTransfer RNAmessenger RNA, phenylalanine specific transfer RNAEscherichia coliBacteriaRF00005Structures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-ray diffraction32014-07-09
714Y4P|1|1yTransfer RNAA-site and E-site tRNAsEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolutionX-ray diffraction2.52015-03-18
724Z3S|1|1yTransfer RNAA/E-site tRNAsEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolutionX-ray diffraction2.652015-06-03
734WSD|1|1KTransfer RNAmRNA, tRNA-PheEscherichia coliBacteriaRF00005Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.X-ray diffraction2.952015-06-10
745DOY|1|1wTransfer RNAA-site and E-site tRNAs, mRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolutionX-ray diffraction2.62015-12-30
754WT1|1|3LTransfer RNAtRNA-PheEscherichia coliBacteriaRF00005Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-siteX-ray diffraction3.052015-06-10
764V5S|1|AWTransfer RNAE-SITE TRNA PHE OR P-SITE TRNA PHEEscherichia coliBacteriaRF00005The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome.X-ray diffraction3.12014-07-09
774V51|1|CWTransfer RNAE-SITE TRNA PHE OR A-SITE TRNA PHE (UNMODIFIED BASES)Escherichia coliBacteriaRF00005Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycinX-ray diffraction2.82014-07-09
785DOY|1|2yTransfer RNAA-site and E-site tRNAsEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolutionX-ray diffraction2.62015-12-30
794W2I|1|AWTransfer RNAA/P-site tRNA, mRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sitesX-ray diffraction2.72014-10-15
804WSD|1|3LTransfer RNAtRNA-PheEscherichia coliBacteriaRF00005Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.X-ray diffraction2.952015-06-10
814V6F|1|BDTransfer RNAMRNA, TRNA-PHE WITH UNMODIFIED NUCLEOTIDES EXCEPT FOR MIA37Escherichia coliBacteriaRF00005Elongation complex of the 70S ribosome with three tRNAs and mRNA.X-ray diffraction3.12014-07-09
824WQR|1|3LTransfer RNAtRNA-PheEscherichia coliBacteriaRF00005Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site.X-ray diffraction3.152015-06-10
834W2I|1|CWTransfer RNAA/P-site tRNA, mRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sitesX-ray diffraction2.72014-10-15
844Z3S|1|2yTransfer RNAA/E-site tRNAsEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolutionX-ray diffraction2.652015-06-03
854Z3S|1|1wTransfer RNAA/E-site tRNAs, mRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolutionX-ray diffraction2.652015-06-03
865W4K|1|2wTransfer RNAmRNA, tRNA, A-site and E-site tRNAsEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolutionX-ray diffraction2.72017-08-30
874V5S|1|CWTransfer RNAE-SITE TRNA PHE OR P-SITE TRNA PHEEscherichia coliBacteriaRF00005The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome.X-ray diffraction3.12014-07-09
881VY4|1|AWTransfer RNAA-site tRNA, mRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.X-ray diffraction2.62014-08-20
894WPO|1|BYTransfer RNAE-site tRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational stateX-ray diffraction2.82015-01-28
904Y4P|1|2yTransfer RNAA-site and E-site tRNAsEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolutionX-ray diffraction2.52015-03-18
914WRO|1|1KTransfer RNARNA (30-MER), tRNA-PheEscherichia coliBacteriaRF00005Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-siteX-ray diffraction3.052015-06-10
924V5D|1|CWTransfer RNAE-SITE TRNA PHEEscherichia coliBacteriaRF00005Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.X-ray diffraction3.52014-07-09
934V5L|1|AVTransfer RNAE-SITE TRNA PHE OR P-SITE TRNA PHE, MRNAEscherichia coliBacteriaRF00005The structure of EF-Tu and aminoacyl-tRNA bound to the 70S ribosome with a GTP analogX-ray diffraction3.12014-07-09
944W2G|1|CWTransfer RNAA/P-site tRNA, mRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sitesX-ray diffraction2.552014-10-15
954V5D|1|AWTransfer RNAE-SITE TRNA PHEEscherichia coliBacteriaRF00005Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.X-ray diffraction3.52014-07-09
964WSD|1|3KTransfer RNAtRNA-PheEscherichia coliBacteriaRF00005Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.X-ray diffraction2.952015-06-10
974W2I|1|AYTransfer RNAA/P-site tRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sitesX-ray diffraction2.72014-10-15
985NDJ|1|W1Transfer RNAmRNA, tRNA-PheEscherichia coliBacteriaRF00005Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)X-ray diffraction3.152018-05-02
994W2F|1|AWTransfer RNAA/P-site tRNA, mRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-ray diffraction2.42014-10-15
1004Y4P|1|1wTransfer RNAA-site and E-site tRNAs, mRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolutionX-ray diffraction2.52015-03-18
1014WT1|1|1LTransfer RNAtRNA-PheEscherichia coliBacteriaRF00005Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-siteX-ray diffraction3.052015-06-10
1024Z3S|1|2wTransfer RNAA/E-site tRNAs, mRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolutionX-ray diffraction2.652015-06-03
1034W2I|1|CYTransfer RNAA/P-site tRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sitesX-ray diffraction2.72014-10-15
1041VY4|1|AYTransfer RNAE-site tRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.X-ray diffraction2.62014-08-20
1054V5E|1|CWTransfer RNAE-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES)Escherichia coliBacteriaRF00005Insights into translational termination from the structure of RF2 bound to the ribosomeX-ray diffraction3.452014-07-09
1064V5D|1|AYTransfer RNAMRNA, P AND A-SITE PHE-TRNA PHEEscherichia coliBacteriaRF00005Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.X-ray diffraction3.52014-07-09
1075NDJ|1|W4Transfer RNAmRNA, tRNA-PheEscherichia coliBacteriaRF00005Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)X-ray diffraction3.152018-05-02
1084WZO|1|3KTransfer RNAtRNA-PheEscherichia coliBacteriaRF00005Complex of 70S ribosome with tRNA-fMet and mRNAX-ray diffraction3.32015-06-10
1094V5J|1|CWTransfer RNAE-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES)Escherichia coliBacteriaRF00005Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide releaseX-ray diffraction3.12014-07-09
1104W2G|1|AYTransfer RNAA/P-site tRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sitesX-ray diffraction2.552014-10-15
1114WPO|1|DYTransfer RNAE-site tRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational stateX-ray diffraction2.82015-01-28
1124V5G|1|AVTransfer RNAE-SITE TRNA PHE OR P-SITE TRNA PHE, MRNAEscherichia coliBacteriaRF00005The crystal structure of the 70S ribosome bound to EF-Tu and tRNAX-ray diffraction3.62014-07-09
1134V5G|1|CVTransfer RNAE-SITE TRNA PHE OR P-SITE TRNA PHE, MRNAEscherichia coliBacteriaRF00005The crystal structure of the 70S ribosome bound to EF-Tu and tRNAX-ray diffraction3.62014-07-09
1144V5D|1|CYTransfer RNAMRNA, P AND A-SITE PHE-TRNA PHEEscherichia coliBacteriaRF00005Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.X-ray diffraction3.52014-07-09
1155WIS|1|2wTransfer RNAA-site and E-site tRNAs, mRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with methymycin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolutionX-ray diffraction2.72018-02-14
1164V5J|1|AWTransfer RNAE-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES)Escherichia coliBacteriaRF00005Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide releaseX-ray diffraction3.12014-07-09
1174V5Q|1|AWTransfer RNAE-SITE TRNA PHE OR P-SITE TRNA PHEEscherichia coliBacteriaRF00005The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosomeX-ray diffraction3.12014-07-09
1182ZXU|1|DTransfer RNAtRNA(Phe)Escherichia coliBacteriaRF00005Crystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe) and DMASPPX-ray diffraction2.752009-05-26
1194V5Q|1|CWTransfer RNAE-SITE TRNA PHE OR P-SITE TRNA PHEEscherichia coliBacteriaRF00005The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosomeX-ray diffraction3.12014-07-09
1205NDK|1|V4Transfer RNAtRNA-PheEscherichia coliBacteriaRF00005Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNAX-ray diffraction2.952017-12-13
1214WQR|1|1KTransfer RNAmRNA, tRNA-PheEscherichia coliBacteriaRF00005Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site.X-ray diffraction3.152015-06-10
1224W2G|1|CYTransfer RNAA/P-site tRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sitesX-ray diffraction2.552014-10-15
1234V6F|1|CDTransfer RNAMRNA, TRNA-PHE WITH UNMODIFIED NUCLEOTIDES EXCEPT FOR MIA37Escherichia coliBacteriaRF00005Elongation complex of the 70S ribosome with three tRNAs and mRNA.X-ray diffraction3.12014-07-09
1245NDJ|1|V4Transfer RNAtRNA-PheEscherichia coliBacteriaRF00005Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)X-ray diffraction3.152018-05-02
1255WIT|1|1yTransfer RNAE-site tRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolutionX-ray diffraction2.62018-02-14
1264WZO|1|3LTransfer RNAtRNA-PheEscherichia coliBacteriaRF00005Complex of 70S ribosome with tRNA-fMet and mRNAX-ray diffraction3.32015-06-10
1274V5G|1|AWTransfer RNAE-SITE TRNA PHE OR P-SITE TRNA PHEEscherichia coliBacteriaRF00005The crystal structure of the 70S ribosome bound to EF-Tu and tRNAX-ray diffraction3.62014-07-09
1284W2F|1|AYTransfer RNAA/P-site tRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-ray diffraction2.42014-10-15
1294Y4P|1|2wTransfer RNAA-site and E-site tRNAs, mRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolutionX-ray diffraction2.52015-03-18
1306C5L|1|CWTransfer RNAE-site tRNA PHE OR P-site tRNA PHE (unmodified bases)Escherichia coliBacteriaRF00005Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)X-ray diffraction3.22018-02-21
1316C5L|1|AWTransfer RNAE-site tRNA PHE OR P-site tRNA PHE (unmodified bases)Escherichia coliBacteriaRF00005Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)X-ray diffraction3.22018-02-21
1325DOY|1|2wTransfer RNAA-site and E-site tRNAs, mRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolutionX-ray diffraction2.62015-12-30
1331VY5|1|AWTransfer RNAA-site tRNA, mRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.X-ray diffraction2.552014-08-20
1344V6F|1|CBTransfer RNAMRNA, TRNA-PHE WITH UNMODIFIED NUCLEOTIDES EXCEPT FOR MIA37Escherichia coliBacteriaRF00005Elongation complex of the 70S ribosome with three tRNAs and mRNA.X-ray diffraction3.12014-07-09
1351VY4|1|CYTransfer RNAE-site tRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.X-ray diffraction2.62014-08-20
1365WIT|1|2yTransfer RNAE-site tRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolutionX-ray diffraction2.62018-02-14
1374WSD|1|1LTransfer RNAmRNA, tRNA-PheEscherichia coliBacteriaRF00005Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.X-ray diffraction2.952015-06-10
1381VY7|1|AYTransfer RNAE-site tRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.X-ray diffraction2.82014-08-20
1395NDK|1|V1Transfer RNAtRNA-PheEscherichia coliBacteriaRF00005Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNAX-ray diffraction2.952017-12-13
1404V5C|1|AWTransfer RNAE-SITE TRNA PHEEscherichia coliBacteriaRF00005Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.X-ray diffraction3.32014-07-09
1414WRO|1|3LTransfer RNAtRNA-PheEscherichia coliBacteriaRF00005Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-siteX-ray diffraction3.052015-06-10
1424V5G|1|CWTransfer RNAE-SITE TRNA PHE OR P-SITE TRNA PHEEscherichia coliBacteriaRF00005The crystal structure of the 70S ribosome bound to EF-Tu and tRNAX-ray diffraction3.62014-07-09
1434W2F|1|CWTransfer RNAA/P-site tRNA, mRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-ray diffraction2.42014-10-15
1444V5P|1|AWTransfer RNAE-SITE TRNA PHE OR P-SITE TRNA PHEEscherichia coliBacteriaRF00005The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosomeX-ray diffraction3.12014-07-09
1454WRO|1|1LTransfer RNAtRNA-PheEscherichia coliBacteriaRF00005Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-siteX-ray diffraction3.052015-06-10
1464V5R|1|CWTransfer RNAE-SITE TRNA PHE OR P-SITE TRNA PHEEscherichia coliBacteriaRF00005The crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome.X-ray diffraction3.12014-07-09
1474W2F|1|CYTransfer RNAA/P-site tRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-ray diffraction2.42014-10-15
1484V5C|1|CYTransfer RNAA-SITE PHE-TRNA PHE, MRNAEscherichia coliBacteriaRF00005Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.X-ray diffraction3.32014-07-09
1494WPO|1|BWTransfer RNAA-site tRNA, mRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational stateX-ray diffraction2.82015-01-28
1504V5R|1|AWTransfer RNAE-SITE TRNA PHE OR P-SITE TRNA PHEEscherichia coliBacteriaRF00005The crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome.X-ray diffraction3.12014-07-09
1514V5C|1|AYTransfer RNAA-SITE PHE-TRNA PHE, MRNAEscherichia coliBacteriaRF00005Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.X-ray diffraction3.32014-07-09
1524WRO|1|3KTransfer RNAtRNA-PheEscherichia coliBacteriaRF00005Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-siteX-ray diffraction3.052015-06-10
1534V6F|1|BBTransfer RNAMRNA, TRNA-PHE WITH UNMODIFIED NUCLEOTIDES EXCEPT FOR MIA37Escherichia coliBacteriaRF00005Elongation complex of the 70S ribosome with three tRNAs and mRNA.X-ray diffraction3.12014-07-09
1544V5P|1|CWTransfer RNAE-SITE TRNA PHE OR P-SITE TRNA PHEEscherichia coliBacteriaRF00005The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosomeX-ray diffraction3.12014-07-09
1555NDJ|1|V1Transfer RNAtRNA-PheEscherichia coliBacteriaRF00005Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)X-ray diffraction3.152018-05-02
1564P6F|1|QWTransfer RNAE-Site tRNA-Phe or A-Site tRNA-PheEscherichia coliBacteriaRF00005Crystal structure of the peptolide 12C bound to bacterial ribosomeX-ray diffraction3.62014-10-01
1571VY5|1|AYTransfer RNAE-site tRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.X-ray diffraction2.552014-08-20
1581VY7|1|CYTransfer RNAE-site tRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.X-ray diffraction2.82014-08-20
1591VY4|1|CWTransfer RNAA-site tRNA, mRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.X-ray diffraction2.62014-08-20
1604V5E|1|AWTransfer RNAE-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES)Escherichia coliBacteriaRF00005Insights into translational termination from the structure of RF2 bound to the ribosomeX-ray diffraction3.452014-07-09
1614V97|1|AWTransfer RNAE-SITE TRNA PHE OR A-SITE tRNA PheEscherichia coliBacteriaRF00005Crystal structure of the bacterial ribosome ram mutation G299A.X-ray diffraction3.522014-07-09
1624V4I|1|zTransfer RNAMRNA, P-site PHE-tRNAEscherichia coliBacteriaRF00005Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements.X-ray diffraction3.712014-07-09
1634P6F|1|XWTransfer RNAE-Site tRNA-Phe or A-Site tRNA-PheEscherichia coliBacteriaRF00005Crystal structure of the peptolide 12C bound to bacterial ribosomeX-ray diffraction3.62014-10-01
1641VY5|1|CWTransfer RNAA-site tRNA, mRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.X-ray diffraction2.552014-08-20
1654V5C|1|CWTransfer RNAE-SITE TRNA PHEEscherichia coliBacteriaRF00005Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.X-ray diffraction3.32014-07-09
1661VY5|1|CYTransfer RNAE-site tRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.X-ray diffraction2.552014-08-20
1674WQR|1|1LTransfer RNAtRNA-PheEscherichia coliBacteriaRF00005Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site.X-ray diffraction3.152015-06-10
1684V9I|1|AWTransfer RNAE-SITE tRNAEscherichia coliBacteriaRF00005Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codonX-ray diffraction3.32014-07-09
1694V9I|1|CWTransfer RNAE-SITE tRNAEscherichia coliBacteriaRF00005Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codonX-ray diffraction3.32014-07-09
1704WPO|1|DWTransfer RNAA-site tRNA, mRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational stateX-ray diffraction2.82015-01-28
1714V97|1|CWTransfer RNAE-SITE TRNA PHE OR A-SITE tRNA PheEscherichia coliBacteriaRF00005Crystal structure of the bacterial ribosome ram mutation G299A.X-ray diffraction3.522014-07-09
1724V5L|1|AWTransfer RNAE-SITE TRNA PHE OR P-SITE TRNA PHEEscherichia coliBacteriaRF00005The structure of EF-Tu and aminoacyl-tRNA bound to the 70S ribosome with a GTP analogX-ray diffraction3.12014-07-09
1734W2H|1|AYTransfer RNAE-site tRNA Acceptor StemEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P siteX-ray diffraction2.72014-10-15
1744V9C|1|CVTransfer RNAMessenger RNA, mRNA, Phenylalanine specific transfer RNA, tRNA-PheEscherichia coliBacteriaRF00005Allosteric control of the ribosome by small-molecule antibioticsX-ray diffraction3.32014-07-09
1754V8J|1|AWTransfer RNAtRNA-PheEscherichia coliBacteriaRF00005Crystal structure of the bacterial ribosome ram mutation G347U.X-ray diffraction3.92014-07-09
1764WQU|1|BYTransfer RNAP-site tRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycinX-ray diffraction2.82015-01-28
1774W2H|1|CYTransfer RNAE-site tRNA Acceptor StemEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P siteX-ray diffraction2.72014-10-15
1784V8J|1|CWTransfer RNAtRNA-PheEscherichia coliBacteriaRF00005Crystal structure of the bacterial ribosome ram mutation G347U.X-ray diffraction3.92014-07-09
1794W2E|1|xTransfer RNAE-site tRNAEscherichia coliBacteriaRF00005Crystal structure of Elongation Factor 4 (EF4/LepA) bound to the Thermus thermophilus 70S ribosomeX-ray diffraction2.92014-10-01
1804V4Y|1|ADTransfer RNAmRNA, tRNA PHE (unmodified bases)Escherichia coliBacteriaRF00005Crystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex.X-ray diffraction5.52014-07-09
1814WQU|1|DYTransfer RNAP-site tRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycinX-ray diffraction2.82015-01-28
1824V4Y|1|ACTransfer RNAmRNA, tRNA PHE (unmodified bases)Escherichia coliBacteriaRF00005Crystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex.X-ray diffraction5.52014-07-09
1834WQF|1|BYTransfer RNAP-site tRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational stateX-ray diffraction2.82015-01-28
1844WQF|1|DYTransfer RNAP-site tRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational stateX-ray diffraction2.82015-01-28
1854V4Y|1|ABTransfer RNAmRNA, tRNA PHE (unmodified bases)Escherichia coliBacteriaRF00005Crystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex.X-ray diffraction5.52014-07-09
1866AZ1|1|2Transfer RNAmRNA, tRNA-PheEscherichia coliBacteriaRF00005Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycinElectron microscopy2.72017-12-06
1876AZ1|1|4Transfer RNAE-site tRNAEscherichia coliBacteriaRF00005Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycinElectron microscopy2.72017-12-06
1883R8O|1|Vmessenger RNA, phenylalanine specific transfer RNAStructures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-ray diffraction32011-06-01
1893R8N|1|Vmessenger RNA, phenylalanine specific transfer RNAStructures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-ray diffraction32011-06-01
1905AFI|1|yTransfer RNAA/T-site Phe-tRNAPhe, mRNAEscherichia coliBacteriaRF000052.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EMElectron microscopy2.92015-03-11
1915UYM|1|YTransfer RNAmRNA, Phe-tRNAPheEscherichia coliBacteriaRF0000570S ribosome bound with cognate ternary complex base-paired to A site codon, closed 30S (Structure III)Electron microscopy3.22017-06-07
1925UQ8|1|zTransfer RNAE-site tRNA PheEscherichia coliBacteriaRF0000570S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)Electron microscopy3.22018-03-07
1935WDT|1|yTransfer RNAmRNA, tRNA-PheEscherichia coliBacteriaRF0000570S ribosome-EF-Tu H84A complex with GppNHpElectron microscopy32018-04-25
1945WFS|1|yTransfer RNAmRNA, Phe-tRNA-PheEscherichia coliBacteriaRF0000570S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C4)Electron microscopy32018-05-02
1955WE4|1|yTransfer RNAmRNA, Phe-tRNA-PheEscherichia coliBacteriaRF0000570S ribosome-EF-Tu wt complex with GppNHpElectron microscopy3.12018-04-25
1962JL7|1|VE-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES), MRNAInsights into translational termination from the structure of RF2 bound to the ribosome (part 3 of 4). This file contains the 30S subunit.X-ray diffraction3.452008-11-04
1972JL5|1|VE-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES), MRNAInsights into translational termination from the structure of RF2 bound to the ribosome (Part 1 of 4). This file contains the 30S subunit.X-ray diffraction3.452008-11-04
1982JL7|1|WE-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES)Insights into translational termination from the structure of RF2 bound to the ribosome (part 3 of 4). This file contains the 30S subunit.X-ray diffraction3.452008-11-04
1992JL5|1|WE-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES)Insights into translational termination from the structure of RF2 bound to the ribosome (Part 1 of 4). This file contains the 30S subunit.X-ray diffraction3.452008-11-04
2003JCE|1|6mRNA, tRNAsynthetic constructStructure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)Electron microscopy3.22016-01-13
2016BU8|1|YTransfer RNAmRNA, tRNAPheEscherichia coliBacteriaRF0000570S ribosome with S1 domains 1 and 2 (Class 1)Electron microscopy3.52018-01-31
2025UQ7|1|zTransfer RNAE-site tRNA PheEscherichia coliBacteriaRF0000570S ribosome complex with dnaX mRNA stemloop and E-site tRNA ('in' conformation)Electron microscopy3.52018-03-07
2035UYL|1|YTransfer RNAmRNA, tRNAPheEscherichia coliBacteriaRF0000570S ribosome bound with cognate ternary complex base-paired to A site codon (Structure II)Electron microscopy3.62017-06-14
2045IQR|1|4Transfer RNAE-site tRNA(Phe)Escherichia coliBacteriaRF00005Structure of RelA bound to the 70S ribosomeElectron microscopy32016-05-04
2055WE6|1|yTransfer RNAmRNA, Phe-tRNA-PheEscherichia coliBacteriaRF0000570S ribosome-EF-Tu H84A complex with GTP and cognate tRNAElectron microscopy3.42018-04-25
2065WFK|1|yTransfer RNAmRNA, Phe-tRNA-PheEscherichia coliBacteriaRF0000570S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C3)Electron microscopy3.42018-05-02
2075WF0|1|yTransfer RNAPhe-tRNA-PheEscherichia coliBacteriaRF0000570S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C2)Electron microscopy3.62018-05-02
2085UYK|1|YTransfer RNAtRNAPheEscherichia coliBacteriaRF0000570S ribosome bound with cognate ternary complex not base-paired to A site codon (Structure I)Electron microscopy3.92017-06-07
2095OT7|1|2Transfer RNAtRNA-PheEscherichia coliBacteriaRF00005Elongation factor G-ribosome complex captures in the absence of inhibitors.Electron microscopy3.82018-02-14
2105KPX|1|30Transfer RNAA-site tRNAPhe, mRNAEscherichia coliBacteriaRF00005Structure of RelA bound to ribosome in presence of A/R tRNA (Structure IV)Electron microscopy3.92016-09-28
2115KPW|1|30Transfer RNAA-site tRNAPhe, mRNAEscherichia coliBacteriaRF00005Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III)Electron microscopy3.92016-09-28
2123J73|1|S5A/P tRNA, Messenger RNAStructure of the translating mammalian ribosome-Sec61 complexElectron microscopy3.92014-06-18
2131VX2|1|5A/P tRNA, Messenger RNAStructure of the translating mammalian ribosome-Sec61 complex. This entry contains the small ribosomal subunit.Electron microscopy3.92014-06-18
2143JCE|1|9tRNAsynthetic constructStructure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)Electron microscopy3.22016-01-13
2155KPV|1|30Transfer RNAA-site tRNAPhe, mRNAEscherichia coliBacteriaRF00005Structure of RelA bound to ribosome in presence of A/R tRNA (Structure II)Electron microscopy4.12016-09-28
2165IQR|1|6Transfer RNAA/T tRNA(Phe), mRNAEscherichia coliBacteriaRF00005Structure of RelA bound to the 70S ribosomeElectron microscopy32016-05-04
2173JCD|1|8mRNA, tRNAsynthetic constructStructure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)Electron microscopy3.72016-01-13
2183JCD|1|9tRNAsynthetic constructStructure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)Electron microscopy3.72016-01-13
2193JBV|1|VTransfer RNARNA (5'-R(P*CP*UP*GP*GP*CP*CP*CP*UP*CP*AP*A)-3'), RNA (76-MER)Escherichia coliBacteriaRF00005Mechanisms of Ribosome Stalling by SecM at Multiple Elongation StepsElectron microscopy3.322016-01-27
2204V69|1|AWTransfer RNAP-site tRNA fMet (Unmodified bases except for Thymine 54)Escherichia coliBacteriaRF00005Ternary complex-bound E.coli 70S ribosome.Electron microscopy6.72014-07-09
2214V7D|1|BVTransfer RNAmRNA, tRNAEscherichia coliBacteriaRF00005Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA*EF-G structure)Electron microscopy7.62014-07-09
2224V7D|1|BWTransfer RNAmRNA, tRNAEscherichia coliBacteriaRF00005Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA*EF-G structure)Electron microscopy7.62014-07-09
2234V7C|1|AWTransfer RNAmRNA, tRNAEscherichia coliBacteriaRF00005Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA structure)Electron microscopy7.62014-07-09
2244V7C|1|AVTransfer RNAmRNA, tRNAEscherichia coliBacteriaRF00005Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA structure)Electron microscopy7.62014-07-09
2254V6K|1|BBTransfer RNAA/T-site tRNA Phe, mRNAEscherichia coliBacteriaRF00005Structural insights into cognate vs. near-cognate discrimination during decoding.Electron microscopy8.252014-07-09
2264V6K|1|BETransfer RNAA/T-site tRNA Phe, mRNAEscherichia coliBacteriaRF00005Structural insights into cognate vs. near-cognate discrimination during decoding.Electron microscopy8.252014-07-09
2273J46|1|aTransfer RNAA-tRNAEscherichia coliBacteriaRF00005Structure of the SecY protein translocation channel in actionElectron microscopy10.12013-10-23
2284V6L|1|AETransfer RNAA/T-site tRNA PheEscherichia coliBacteriaRF00005Structural insights into cognate vs. near-cognate discrimination during decoding.Electron microscopy13.22014-07-09
2294V6L|1|ABTransfer RNAA/T-site tRNA Phe, mRNAEscherichia coliBacteriaRF00005Structural insights into cognate vs. near-cognate discrimination during decoding.Electron microscopy13.22014-07-09

Release history

Release3.203.213.223.233.243.253.263.273.283.293.303.313.323.333.343.353.363.373.383.393.403.413.423.433.443.453.463.473.483.493.50
Date2018-05-042018-05-112018-05-182018-05-252018-06-012018-06-082018-06-152018-06-222018-06-292018-07-062018-07-132018-07-202018-07-272018-08-032018-08-102018-08-172018-08-242018-08-312018-09-072018-09-142018-09-212018-09-282018-10-052018-10-122018-10-192018-10-262018-11-022018-11-092018-11-162018-11-232018-11-30

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_20.0_19951.24NR_20.0_19951.233.20(220) 1VX2|1|5, 1VY4|1|AW, 1VY4|1|AY, 1VY4|1|CW, 1VY4|1|CY, 1VY5|1|AW, 1VY5|1|AY, 1VY5|1|CW, 1VY5|1|CY, 1VY7|1|AY, 1VY7|1|CY, 2JL5|1|V, 2JL5|1|W, 2JL7|1|V, 2JL7|1|W, 2ZM5|1|C, 2ZM5|1|D, 2ZXU|1|C, 2ZXU|1|D, 3FOZ|1|C, 3FOZ|1|D, 3J46|1|a, 3J73|1|S5, 3JBV|1|V, 3JCD|1|8, 3JCD|1|9, 3JCE|1|6, 3JCE|1|9, 3L0U|1|A, 3R8N|1|V, 3R8O|1|V, 4P6F|1|QW, 4P6F|1|XW, 4V4I|1|z, 4V4Y|1|AB, 4V4Y|1|AC, 4V4Y|1|AD, 4V51|1|AW, 4V51|1|CW, 4V5C|1|AW, 4V5C|1|AY, 4V5C|1|CW, 4V5C|1|CY, 4V5D|1|AV, 4V5D|1|AW, 4V5D|1|AY, 4V5D|1|CV, 4V5D|1|CW, 4V5D|1|CY, 4V5E|1|AV, 4V5E|1|AW, 4V5E|1|CV, 4V5E|1|CW, 4V5G|1|AV, 4V5G|1|AW, 4V5G|1|CV, 4V5G|1|CW, 4V5J|1|AV, 4V5J|1|AW, 4V5J|1|CV, 4V5J|1|CW, 4V5L|1|AV, 4V5L|1|AW, 4V5P|1|AV, 4V5P|1|AW, 4V5P|1|CV, 4V5P|1|CW, 4V5Q|1|AV, 4V5Q|1|AW, 4V5Q|1|CV, 4V5Q|1|CW, 4V5R|1|AV, 4V5R|1|AW, 4V5R|1|CV, 4V5R|1|CW, 4V5S|1|AV, 4V5S|1|AW, 4V5S|1|CV, 4V5S|1|CW, 4V69|1|AW, 4V6F|1|BB, 4V6F|1|BC, 4V6F|1|BD, 4V6F|1|CB, 4V6F|1|CC, 4V6F|1|CD, 4V6K|1|BB, 4V6K|1|BE, 4V6L|1|AB, 4V6L|1|AE, 4V7C|1|AV, 4V7C|1|AW, 4V7D|1|BV, 4V7D|1|BW, 4V8J|1|AW, 4V8J|1|CW, 4V97|1|AW, 4V97|1|CW, 4V9C|1|AV, 4V9C|1|CV, 4V9D|1|AV, 4V9D|1|BV, 4V9H|1|AV, 4V9I|1|AW, 4V9I|1|CW, 4W2E|1|w, 4W2E|1|x, 4W2F|1|AW, 4W2F|1|AY, 4W2F|1|CW, 4W2F|1|CY, 4W2G|1|AW, 4W2G|1|AY, 4W2G|1|CW, 4W2G|1|CY, 4W2H|1|AY, 4W2H|1|CY, 4W2I|1|AW, 4W2I|1|AY, 4W2I|1|CW, 4W2I|1|CY, 4WOI|1|AX, 4WOI|1|DW, 4WPO|1|BW, 4WPO|1|BY, 4WPO|1|DW, 4WPO|1|DY, 4WQF|1|BW, 4WQF|1|BY, 4WQF|1|DW, 4WQF|1|DY, 4WQR|1|1K, 4WQR|1|1L, 4WQR|1|3K, 4WQR|1|3L, 4WQU|1|BW, 4WQU|1|BY, 4WQU|1|DW, 4WQU|1|DY, 4WRO|1|1K, 4WRO|1|1L, 4WRO|1|3K, 4WRO|1|3L, 4WSD|1|1K, 4WSD|1|1L, 4WSD|1|3K, 4WSD|1|3L, 4WT1|1|1K, 4WT1|1|1L, 4WT1|1|3K, 4WT1|1|3L, 4WZO|1|3K, 4WZO|1|3L, 4Y4P|1|1w, 4Y4P|1|1y, 4Y4P|1|2w, 4Y4P|1|2y, 4YCO|1|D, 4YCO|1|E, 4YCO|1|F, 4Z3S|1|1w, 4Z3S|1|1y, 4Z3S|1|2w, 4Z3S|1|2y, 5AFI|1|y, 5DOY|1|1w, 5DOY|1|1y, 5DOY|1|2w, 5DOY|1|2y, 5IQR|1|4, 5IQR|1|6, 5J4B|1|1w, 5J4B|1|1y, 5J4B|1|2w, 5J4B|1|2y, 5J4C|1|1w, 5J4C|1|1y, 5J4C|1|2w, 5J4C|1|2y, 5KPV|1|30, 5KPW|1|30, 5KPX|1|30, 5NDK|1|V1, 5NDK|1|V4, 5NDK|1|W1, 5NDK|1|W4, 5NDK|1|X1, 5NDK|1|X4, 5OT7|1|2, 5UQ7|1|z, 5UQ8|1|z, 5UYK|1|Y, 5UYL|1|Y, 5UYM|1|Y, 5W4K|1|1w, 5W4K|1|1y, 5W4K|1|2w, 5W4K|1|2y, 5WDT|1|y, 5WE4|1|y, 5WE6|1|y, 5WIS|1|1w, 5WIS|1|1y, 5WIS|1|2w, 5WIS|1|2y, 5WIT|1|1w, 5WIT|1|1y, 5WIT|1|2w, 5WIT|1|2y, 6AZ1|1|2, 6AZ1|1|4, 6BU8|1|Y, 6C5L|1|AV, 6C5L|1|AW, 6C5L|1|CV, 6C5L|1|CW, 6CFJ|1|1w, 6CFJ|1|1y, 6CFJ|1|2w, 6CFJ|1|2y(9) 5NDJ|1|V1, 5NDJ|1|V4, 5NDJ|1|W1, 5NDJ|1|W4, 5NDJ|1|X1, 5NDJ|1|X4, 5WF0|1|y, 5WFK|1|y, 5WFS|1|y(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_20.0_19951.24NR_20.0_19951.253.51(229) 1VX2|1|5, 1VY4|1|AW, 1VY4|1|AY, 1VY4|1|CW, 1VY4|1|CY, 1VY5|1|AW, 1VY5|1|AY, 1VY5|1|CW, 1VY5|1|CY, 1VY7|1|AY, 1VY7|1|CY, 2JL5|1|V, 2JL5|1|W, 2JL7|1|V, 2JL7|1|W, 2ZM5|1|C, 2ZM5|1|D, 2ZXU|1|C, 2ZXU|1|D, 3FOZ|1|C, 3FOZ|1|D, 3J46|1|a, 3J73|1|S5, 3JBV|1|V, 3JCD|1|8, 3JCD|1|9, 3JCE|1|6, 3JCE|1|9, 3L0U|1|A, 3R8N|1|V, 3R8O|1|V, 4P6F|1|QW, 4P6F|1|XW, 4V4I|1|z, 4V4Y|1|AB, 4V4Y|1|AC, 4V4Y|1|AD, 4V51|1|AW, 4V51|1|CW, 4V5C|1|AW, 4V5C|1|AY, 4V5C|1|CW, 4V5C|1|CY, 4V5D|1|AV, 4V5D|1|AW, 4V5D|1|AY, 4V5D|1|CV, 4V5D|1|CW, 4V5D|1|CY, 4V5E|1|AV, 4V5E|1|AW, 4V5E|1|CV, 4V5E|1|CW, 4V5G|1|AV, 4V5G|1|AW, 4V5G|1|CV, 4V5G|1|CW, 4V5J|1|AV, 4V5J|1|AW, 4V5J|1|CV, 4V5J|1|CW, 4V5L|1|AV, 4V5L|1|AW, 4V5P|1|AV, 4V5P|1|AW, 4V5P|1|CV, 4V5P|1|CW, 4V5Q|1|AV, 4V5Q|1|AW, 4V5Q|1|CV, 4V5Q|1|CW, 4V5R|1|AV, 4V5R|1|AW, 4V5R|1|CV, 4V5R|1|CW, 4V5S|1|AV, 4V5S|1|AW, 4V5S|1|CV, 4V5S|1|CW, 4V69|1|AW, 4V6F|1|BB, 4V6F|1|BC, 4V6F|1|BD, 4V6F|1|CB, 4V6F|1|CC, 4V6F|1|CD, 4V6K|1|BB, 4V6K|1|BE, 4V6L|1|AB, 4V6L|1|AE, 4V7C|1|AV, 4V7C|1|AW, 4V7D|1|BV, 4V7D|1|BW, 4V8J|1|AW, 4V8J|1|CW, 4V97|1|AW, 4V97|1|CW, 4V9C|1|AV, 4V9C|1|CV, 4V9D|1|AV, 4V9D|1|BV, 4V9H|1|AV, 4V9I|1|AW, 4V9I|1|CW, 4W2E|1|w, 4W2E|1|x, 4W2F|1|AW, 4W2F|1|AY, 4W2F|1|CW, 4W2F|1|CY, 4W2G|1|AW, 4W2G|1|AY, 4W2G|1|CW, 4W2G|1|CY, 4W2H|1|AY, 4W2H|1|CY, 4W2I|1|AW, 4W2I|1|AY, 4W2I|1|CW, 4W2I|1|CY, 4WOI|1|AX, 4WOI|1|DW, 4WPO|1|BW, 4WPO|1|BY, 4WPO|1|DW, 4WPO|1|DY, 4WQF|1|BW, 4WQF|1|BY, 4WQF|1|DW, 4WQF|1|DY, 4WQR|1|1K, 4WQR|1|1L, 4WQR|1|3K, 4WQR|1|3L, 4WQU|1|BW, 4WQU|1|BY, 4WQU|1|DW, 4WQU|1|DY, 4WRO|1|1K, 4WRO|1|1L, 4WRO|1|3K, 4WRO|1|3L, 4WSD|1|1K, 4WSD|1|1L, 4WSD|1|3K, 4WSD|1|3L, 4WT1|1|1K, 4WT1|1|1L, 4WT1|1|3K, 4WT1|1|3L, 4WZO|1|3K, 4WZO|1|3L, 4Y4P|1|1w, 4Y4P|1|1y, 4Y4P|1|2w, 4Y4P|1|2y, 4YCO|1|D, 4YCO|1|E, 4YCO|1|F, 4Z3S|1|1w, 4Z3S|1|1y, 4Z3S|1|2w, 4Z3S|1|2y, 5AFI|1|y, 5DOY|1|1w, 5DOY|1|1y, 5DOY|1|2w, 5DOY|1|2y, 5IQR|1|4, 5IQR|1|6, 5J4B|1|1w, 5J4B|1|1y, 5J4B|1|2w, 5J4B|1|2y, 5J4C|1|1w, 5J4C|1|1y, 5J4C|1|2w, 5J4C|1|2y, 5KPV|1|30, 5KPW|1|30, 5KPX|1|30, 5NDJ|1|V1, 5NDJ|1|V4, 5NDJ|1|W1, 5NDJ|1|W4, 5NDJ|1|X1, 5NDJ|1|X4, 5NDK|1|V1, 5NDK|1|V4, 5NDK|1|W1, 5NDK|1|W4, 5NDK|1|X1, 5NDK|1|X4, 5OT7|1|2, 5UQ7|1|z, 5UQ8|1|z, 5UYK|1|Y, 5UYL|1|Y, 5UYM|1|Y, 5W4K|1|1w, 5W4K|1|1y, 5W4K|1|2w, 5W4K|1|2y, 5WDT|1|y, 5WE4|1|y, 5WE6|1|y, 5WF0|1|y, 5WFK|1|y, 5WFS|1|y, 5WIS|1|1w, 5WIS|1|1y, 5WIS|1|2w, 5WIS|1|2y, 5WIT|1|1w, 5WIT|1|1y, 5WIT|1|2w, 5WIT|1|2y, 6AZ1|1|2, 6AZ1|1|4, 6BU8|1|Y, 6C5L|1|AV, 6C5L|1|AW, 6C5L|1|CV, 6C5L|1|CW, 6CFJ|1|1w, 6CFJ|1|1y, 6CFJ|1|2w, 6CFJ|1|2y(0) (7) 4WWE|1|2, 4WWE|1|3, 4WWT|1|3, 4Z3Q|1|1w, 4Z3Q|1|1y, 4Z3Q|1|2w, 4Z3Q|1|2y

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLength
11VY7|1|CYCrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.X-RAY DIFFRACTION2.85
21VY7|1|AYCrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.X-RAY DIFFRACTION2.85
35UQ8|1|z70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)ELECTRON MICROSCOPY3.276
44W2H|1|CYCrystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P siteX-RAY DIFFRACTION2.75
52ZM5|1|CCrystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe)X-RAY DIFFRACTION2.5574
62ZXU|1|CCrystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe) and DMASPPX-RAY DIFFRACTION2.7574
73FOZ|1|CStructure of E. coli Isopentenyl-tRNA transferase in complex with E. coli tRNA(Phe)X-RAY DIFFRACTION2.574
82ZXU|1|DCrystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe) and DMASPPX-RAY DIFFRACTION2.7569
92ZM5|1|DCrystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe)X-RAY DIFFRACTION2.5569
104W2H|1|AYCrystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P siteX-RAY DIFFRACTION2.718
115WIT|1|2yCrystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolutionX-RAY DIFFRACTION2.666
126CFJ|1|2yCrystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolutionX-RAY DIFFRACTION2.866
135J4B|1|2yCrystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolutionX-RAY DIFFRACTION2.666
145J4C|1|2yCrystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (soaked) and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolutionX-RAY DIFFRACTION2.866
154Y4P|1|2yCrystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolutionX-RAY DIFFRACTION2.566
164W2F|1|CYCrystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.466
174W2G|1|CYCrystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.5566
184W2I|1|CYCrystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.766
191VY5|1|CYCrystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.X-RAY DIFFRACTION2.5566
201VY4|1|CYCrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.X-RAY DIFFRACTION2.666
214WQU|1|DYCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycinX-RAY DIFFRACTION2.866
224WQF|1|DYCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational stateX-RAY DIFFRACTION2.866
234WPO|1|DYCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational stateX-RAY DIFFRACTION2.866
245DOY|1|2yCrystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolutionX-RAY DIFFRACTION2.666
254Z3S|1|2yCrystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolutionX-RAY DIFFRACTION2.6566
264W2G|1|AYCrystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.5567
274WPO|1|BYCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational stateX-RAY DIFFRACTION2.867
284WQU|1|BYCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycinX-RAY DIFFRACTION2.867
294WQF|1|BYCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational stateX-RAY DIFFRACTION2.867
304W2E|1|xCrystal structure of Elongation Factor 4 (EF4/LepA) bound to the Thermus thermophilus 70S ribosomeX-RAY DIFFRACTION2.967
311VY4|1|AYCrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.X-RAY DIFFRACTION2.667
321VY5|1|AYCrystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.X-RAY DIFFRACTION2.5567
334W2I|1|AYCrystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.767
345WIT|1|1yCrystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolutionX-RAY DIFFRACTION2.667
354W2F|1|AYCrystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.467
366CFJ|1|1yCrystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolutionX-RAY DIFFRACTION2.867
374Y4P|1|1yCrystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolutionX-RAY DIFFRACTION2.567
385J4C|1|1yCrystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (soaked) and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolutionX-RAY DIFFRACTION2.867
395J4B|1|1yCrystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolutionX-RAY DIFFRACTION2.667
405WIS|1|1yCrystal structure of the Thermus thermophilus 70S ribosome in complex with methymycin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolutionX-RAY DIFFRACTION2.767
415W4K|1|1yCrystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolutionX-RAY DIFFRACTION2.768
425W4K|1|2yCrystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolutionX-RAY DIFFRACTION2.767
435WIS|1|2yCrystal structure of the Thermus thermophilus 70S ribosome in complex with methymycin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolutionX-RAY DIFFRACTION2.766
445DOY|1|1yCrystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolutionX-RAY DIFFRACTION2.667
454Z3S|1|1yCrystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolutionX-RAY DIFFRACTION2.6567
465UQ7|1|z70S ribosome complex with dnaX mRNA stemloop and E-site tRNA ('in' conformation)ELECTRON MICROSCOPY3.576
474P6F|1|QWCrystal structure of the peptolide 12C bound to bacterial ribosomeX-RAY DIFFRACTION3.676
484V97|1|AWCrystal structure of the bacterial ribosome ram mutation G299A.X-RAY DIFFRACTION3.5276
494V8J|1|AWCrystal structure of the bacterial ribosome ram mutation G347U.X-RAY DIFFRACTION3.976
504V5C|1|AWStructure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.X-RAY DIFFRACTION3.376
514V5D|1|CWStructure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.X-RAY DIFFRACTION3.576
524V5D|1|AWStructure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.X-RAY DIFFRACTION3.576
534V5C|1|CWStructure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.X-RAY DIFFRACTION3.376
544V51|1|AWStructure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycinX-RAY DIFFRACTION2.876
554V51|1|CWStructure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycinX-RAY DIFFRACTION2.876
564V8J|1|CWCrystal structure of the bacterial ribosome ram mutation G347U.X-RAY DIFFRACTION3.976
574V97|1|CWCrystal structure of the bacterial ribosome ram mutation G299A.X-RAY DIFFRACTION3.5276
584P6F|1|XWCrystal structure of the peptolide 12C bound to bacterial ribosomeX-RAY DIFFRACTION3.676
594V5E|1|CWInsights into translational termination from the structure of RF2 bound to the ribosomeX-RAY DIFFRACTION3.4576
602JL7|1|WInsights into translational termination from the structure of RF2 bound to the ribosome (part 3 of 4). This file contains the 30S subunit.X-RAY DIFFRACTION3.4576
612JL5|1|WInsights into translational termination from the structure of RF2 bound to the ribosome (Part 1 of 4). This file contains the 30S subunit.X-RAY DIFFRACTION3.4576
624V5E|1|AWInsights into translational termination from the structure of RF2 bound to the ribosomeX-RAY DIFFRACTION3.4576
634V9I|1|CWCrystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codonX-RAY DIFFRACTION3.376
644V9I|1|AWCrystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codonX-RAY DIFFRACTION3.376
656C5L|1|CWConformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)X-RAY DIFFRACTION3.275
666C5L|1|AWConformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)X-RAY DIFFRACTION3.275
674V5J|1|AWStructure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide releaseX-RAY DIFFRACTION3.175
684V5J|1|CWStructure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide releaseX-RAY DIFFRACTION3.175
693JCE|1|9Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)ELECTRON MICROSCOPY3.276
705IQR|1|4Structure of RelA bound to the 70S ribosomeELECTRON MICROSCOPY376
714V5L|1|AWThe structure of EF-Tu and aminoacyl-tRNA bound to the 70S ribosome with a GTP analogX-RAY DIFFRACTION3.176
724V5S|1|AWThe crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome.X-RAY DIFFRACTION3.176
734V5Q|1|AWThe crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosomeX-RAY DIFFRACTION3.176
744V5P|1|AWThe crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosomeX-RAY DIFFRACTION3.176
754V5P|1|CWThe crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosomeX-RAY DIFFRACTION3.176
764V5R|1|AWThe crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome.X-RAY DIFFRACTION3.176
774V5R|1|CWThe crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome.X-RAY DIFFRACTION3.176
784V5G|1|AWThe crystal structure of the 70S ribosome bound to EF-Tu and tRNAX-RAY DIFFRACTION3.676
794V5G|1|CWThe crystal structure of the 70S ribosome bound to EF-Tu and tRNAX-RAY DIFFRACTION3.676
804V5S|1|CWThe crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome.X-RAY DIFFRACTION3.176
814V5Q|1|CWThe crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosomeX-RAY DIFFRACTION3.176
824V69|1|AWTernary complex-bound E.coli 70S ribosome.ELECTRON MICROSCOPY6.776
834WZO|1|3KComplex of 70S ribosome with tRNA-fMet and mRNAX-RAY DIFFRACTION3.370
844WRO|1|3KComplex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-siteX-RAY DIFFRACTION3.0568
854WT1|1|3KComplex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-siteX-RAY DIFFRACTION3.0576
864WQR|1|3KComplex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site.X-RAY DIFFRACTION3.1576
874WSD|1|3KComplex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.X-RAY DIFFRACTION2.9572
885NDJ|1|V1Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)X-RAY DIFFRACTION3.1576
895NDK|1|V1Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNAX-RAY DIFFRACTION2.9576
905NDK|1|V4Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNAX-RAY DIFFRACTION2.9576
915NDJ|1|V4Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)X-RAY DIFFRACTION3.1576
924V6F|1|CDElongation complex of the 70S ribosome with three tRNAs and mRNA.X-RAY DIFFRACTION3.175
934WZO|1|3LComplex of 70S ribosome with tRNA-fMet and mRNAX-RAY DIFFRACTION3.370
944WRO|1|3LComplex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-siteX-RAY DIFFRACTION3.0568
954WT1|1|3LComplex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-siteX-RAY DIFFRACTION3.0576
964WSD|1|3LComplex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.X-RAY DIFFRACTION2.9571
974V6F|1|BDElongation complex of the 70S ribosome with three tRNAs and mRNA.X-RAY DIFFRACTION3.175
984WQR|1|3LComplex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site.X-RAY DIFFRACTION3.1576
994V4Y|1|ADCrystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex.X-RAY DIFFRACTION5.576
1005UYK|1|Y70S ribosome bound with cognate ternary complex not base-paired to A site codon (Structure I)ELECTRON MICROSCOPY3.976
1013JCD|1|9Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)ELECTRON MICROSCOPY3.776
1026AZ1|1|4Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycinELECTRON MICROSCOPY2.776
1035OT7|1|2Elongation factor G-ribosome complex captures in the absence of inhibitors.ELECTRON MICROSCOPY3.876
1044V9H|1|AVCrystal structure of the ribosome bound to elongation factor G in the guanosine triphosphatase stateX-RAY DIFFRACTION2.8674
1053R8N|1|VStructures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-RAY DIFFRACTION376
1064V9D|1|AVStructures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-RAY DIFFRACTION376
1074V7D|1|BWStructure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA*EF-G structure)ELECTRON MICROSCOPY7.676
1084V7C|1|AWStructure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA structure)ELECTRON MICROSCOPY7.676
1094V7D|1|BVStructure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA*EF-G structure)ELECTRON MICROSCOPY7.676
1104V7C|1|AVStructure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA structure)ELECTRON MICROSCOPY7.676
1113JBV|1|VMechanisms of Ribosome Stalling by SecM at Multiple Elongation StepsELECTRON MICROSCOPY3.3276
1124V9C|1|CVAllosteric control of the ribosome by small-molecule antibioticsX-RAY DIFFRACTION3.376
1134WOI|1|AX4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2X-RAY DIFFRACTION376
1143L0U|1|AThe crystal structure of unmodified tRNAPhe from Escherichia coliX-RAY DIFFRACTION373
1154V4Y|1|ABCrystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex.X-RAY DIFFRACTION5.576
1163J73|1|S5Structure of the translating mammalian ribosome-Sec61 complexELECTRON MICROSCOPY3.974
1171VX2|1|5Structure of the translating mammalian ribosome-Sec61 complex. This entry contains the small ribosomal subunit.ELECTRON MICROSCOPY3.974
1184V5C|1|AYStructure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.X-RAY DIFFRACTION3.375
1194V5C|1|CYStructure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.X-RAY DIFFRACTION3.375
1204V5D|1|CYStructure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.X-RAY DIFFRACTION3.575
1214V5D|1|AYStructure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.X-RAY DIFFRACTION3.575
1224WRO|1|1KComplex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-siteX-RAY DIFFRACTION3.0567
1234WSD|1|1KComplex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.X-RAY DIFFRACTION2.9570
1244WT1|1|1KComplex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-siteX-RAY DIFFRACTION3.0569
1254WQR|1|1KComplex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site.X-RAY DIFFRACTION3.1573
1264WQR|1|1LComplex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site.X-RAY DIFFRACTION3.1573
1274WRO|1|1LComplex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-siteX-RAY DIFFRACTION3.0568
1284WSD|1|1LComplex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.X-RAY DIFFRACTION2.9572
1294WT1|1|1LComplex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-siteX-RAY DIFFRACTION3.0576
1303J46|1|aStructure of the SecY protein translocation channel in actionELECTRON MICROSCOPY10.175
1314V6F|1|BBElongation complex of the 70S ribosome with three tRNAs and mRNA.X-RAY DIFFRACTION3.175
1324V6F|1|CBElongation complex of the 70S ribosome with three tRNAs and mRNA.X-RAY DIFFRACTION3.175
1335NDK|1|W4Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNAX-RAY DIFFRACTION2.9576
1345NDJ|1|W4Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)X-RAY DIFFRACTION3.1576
1355NDJ|1|W1Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)X-RAY DIFFRACTION3.1576
1365NDK|1|W1Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNAX-RAY DIFFRACTION2.9576
1375WIT|1|2wCrystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolutionX-RAY DIFFRACTION2.664
1384W2I|1|CWCrystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.765
1394WPO|1|DWCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational stateX-RAY DIFFRACTION2.864
1401VY4|1|CWCrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.X-RAY DIFFRACTION2.664
1411VY5|1|CWCrystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.X-RAY DIFFRACTION2.5564
1424W2G|1|CWCrystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.5565
1434W2F|1|CWCrystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.465
1445WIS|1|2wCrystal structure of the Thermus thermophilus 70S ribosome in complex with methymycin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolutionX-RAY DIFFRACTION2.765
1454Y4P|1|2wCrystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolutionX-RAY DIFFRACTION2.565
1465J4B|1|2wCrystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolutionX-RAY DIFFRACTION2.665
1475J4C|1|2wCrystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (soaked) and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolutionX-RAY DIFFRACTION2.865
1485W4K|1|2wCrystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolutionX-RAY DIFFRACTION2.765
1496CFJ|1|2wCrystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolutionX-RAY DIFFRACTION2.865
1506CFJ|1|1wCrystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolutionX-RAY DIFFRACTION2.867
1515W4K|1|1wCrystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolutionX-RAY DIFFRACTION2.767
1525J4C|1|1wCrystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (soaked) and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolutionX-RAY DIFFRACTION2.867
1535J4B|1|1wCrystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolutionX-RAY DIFFRACTION2.667
1544Y4P|1|1wCrystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolutionX-RAY DIFFRACTION2.567
1555WIS|1|1wCrystal structure of the Thermus thermophilus 70S ribosome in complex with methymycin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolutionX-RAY DIFFRACTION2.767
1564W2I|1|AWCrystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.767
1574W2F|1|AWCrystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.467
1584W2G|1|AWCrystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.5567
1591VY5|1|AWCrystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.X-RAY DIFFRACTION2.5566
1601VY4|1|AWCrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.X-RAY DIFFRACTION2.666
1614WPO|1|BWCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational stateX-RAY DIFFRACTION2.866
1625WIT|1|1wCrystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolutionX-RAY DIFFRACTION2.666
1636AZ1|1|2Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycinELECTRON MICROSCOPY2.775
1645DOY|1|1wCrystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolutionX-RAY DIFFRACTION2.668
1654Z3S|1|1wCrystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolutionX-RAY DIFFRACTION2.6567
1664Z3S|1|2wCrystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolutionX-RAY DIFFRACTION2.6566
1675DOY|1|2wCrystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolutionX-RAY DIFFRACTION2.667
1686BU8|1|Y70S ribosome with S1 domains 1 and 2 (Class 1)ELECTRON MICROSCOPY3.576
1693JCE|1|6Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)ELECTRON MICROSCOPY3.275
1704YCO|1|EE. coli dihydrouridine synthase C (DusC) in complex with tRNAPheX-RAY DIFFRACTION2.167
1714YCO|1|DE. coli dihydrouridine synthase C (DusC) in complex with tRNAPheX-RAY DIFFRACTION2.174
1724YCO|1|FE. coli dihydrouridine synthase C (DusC) in complex with tRNAPheX-RAY DIFFRACTION2.171
1734V4Y|1|ACCrystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex.X-RAY DIFFRACTION5.576
1744V4I|1|zCrystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements.X-RAY DIFFRACTION3.7167
1754W2E|1|wCrystal structure of Elongation Factor 4 (EF4/LepA) bound to the Thermus thermophilus 70S ribosomeX-RAY DIFFRACTION2.968
1764V5S|1|AVThe crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome.X-RAY DIFFRACTION3.176
1774V5Q|1|AVThe crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosomeX-RAY DIFFRACTION3.176
1784V5P|1|AVThe crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosomeX-RAY DIFFRACTION3.176
1794V5P|1|CVThe crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosomeX-RAY DIFFRACTION3.176
1804V5R|1|CVThe crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome.X-RAY DIFFRACTION3.176
1814V5R|1|AVThe crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome.X-RAY DIFFRACTION3.176
1824V5L|1|AVThe structure of EF-Tu and aminoacyl-tRNA bound to the 70S ribosome with a GTP analogX-RAY DIFFRACTION3.176
1834V5S|1|CVThe crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome.X-RAY DIFFRACTION3.176
1844V5Q|1|CVThe crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosomeX-RAY DIFFRACTION3.176
1855NDK|1|X1Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNAX-RAY DIFFRACTION2.9576
1865NDJ|1|X1Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)X-RAY DIFFRACTION3.1576
1874V6F|1|CCElongation complex of the 70S ribosome with three tRNAs and mRNA.X-RAY DIFFRACTION3.175
1884V9C|1|AVAllosteric control of the ribosome by small-molecule antibioticsX-RAY DIFFRACTION3.376
1894WOI|1|DW4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2X-RAY DIFFRACTION376
1903R8O|1|VStructures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-RAY DIFFRACTION376
1914V9D|1|BVStructures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-RAY DIFFRACTION376
1924V6F|1|BCElongation complex of the 70S ribosome with three tRNAs and mRNA.X-RAY DIFFRACTION3.175
1935NDK|1|X4Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNAX-RAY DIFFRACTION2.9576
1945NDJ|1|X4Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)X-RAY DIFFRACTION3.1576
1954WQF|1|DWCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational stateX-RAY DIFFRACTION2.869
1964WQU|1|BWCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycinX-RAY DIFFRACTION2.869
1974WQF|1|BWCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational stateX-RAY DIFFRACTION2.869
1984WQU|1|DWCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycinX-RAY DIFFRACTION2.869
1993JCD|1|8Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)ELECTRON MICROSCOPY3.776
2004V5J|1|CVStructure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide releaseX-RAY DIFFRACTION3.175
2016C5L|1|CVConformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)X-RAY DIFFRACTION3.276
2026C5L|1|AVConformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)X-RAY DIFFRACTION3.276
2032JL5|1|VInsights into translational termination from the structure of RF2 bound to the ribosome (Part 1 of 4). This file contains the 30S subunit.X-RAY DIFFRACTION3.4576
2044V5E|1|AVInsights into translational termination from the structure of RF2 bound to the ribosomeX-RAY DIFFRACTION3.4576
2052JL7|1|VInsights into translational termination from the structure of RF2 bound to the ribosome (part 3 of 4). This file contains the 30S subunit.X-RAY DIFFRACTION3.4576
2064V5E|1|CVInsights into translational termination from the structure of RF2 bound to the ribosomeX-RAY DIFFRACTION3.4576
2074V5J|1|AVStructure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide releaseX-RAY DIFFRACTION3.175
2084V5D|1|AVStructure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.X-RAY DIFFRACTION3.575
2094V5G|1|AVThe crystal structure of the 70S ribosome bound to EF-Tu and tRNAX-RAY DIFFRACTION3.676
2104V5G|1|CVThe crystal structure of the 70S ribosome bound to EF-Tu and tRNAX-RAY DIFFRACTION3.676
2114V5D|1|CVStructure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.X-RAY DIFFRACTION3.575
2124V6K|1|BEStructural insights into cognate vs. near-cognate discrimination during decoding.ELECTRON MICROSCOPY8.2566
2134V6L|1|AEStructural insights into cognate vs. near-cognate discrimination during decoding.ELECTRON MICROSCOPY13.266
2145KPV|1|30Structure of RelA bound to ribosome in presence of A/R tRNA (Structure II)ELECTRON MICROSCOPY4.176
2155KPX|1|30Structure of RelA bound to ribosome in presence of A/R tRNA (Structure IV)ELECTRON MICROSCOPY3.976
2165KPW|1|30Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III)ELECTRON MICROSCOPY3.976
2175IQR|1|6Structure of RelA bound to the 70S ribosomeELECTRON MICROSCOPY367
2185UYL|1|Y70S ribosome bound with cognate ternary complex base-paired to A site codon (Structure II)ELECTRON MICROSCOPY3.676
2195UYM|1|Y70S ribosome bound with cognate ternary complex base-paired to A site codon, closed 30S (Structure III)ELECTRON MICROSCOPY3.276
2205AFI|1|y2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EMELECTRON MICROSCOPY2.967
2215WE6|1|y70S ribosome-EF-Tu H84A complex with GTP and cognate tRNAELECTRON MICROSCOPY3.467
2225WF0|1|y70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C2)ELECTRON MICROSCOPY3.667
2235WE4|1|y70S ribosome-EF-Tu wt complex with GppNHpELECTRON MICROSCOPY3.167
2245WDT|1|y70S ribosome-EF-Tu H84A complex with GppNHpELECTRON MICROSCOPY367
2255WFS|1|y70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C4)ELECTRON MICROSCOPY367
2265WFK|1|y70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C3)ELECTRON MICROSCOPY3.467
2274V6K|1|BBStructural insights into cognate vs. near-cognate discrimination during decoding.ELECTRON MICROSCOPY8.2566
2284V6L|1|ABStructural insights into cognate vs. near-cognate discrimination during decoding.ELECTRON MICROSCOPY13.266
2293FOZ|1|DStructure of E. coli Isopentenyl-tRNA transferase in complex with E. coli tRNA(Phe)X-RAY DIFFRACTION2.569

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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