#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
14YCO|1|D (rep)Transfer RNAtRNApheEscherichia coliBacteriaRF00005E. coli dihydrouridine synthase C (DusC) in complex with tRNAPheX-ray diffraction2.12015-04-22
24YCO|1|ETransfer RNAtRNApheEscherichia coliBacteriaRF00005E. coli dihydrouridine synthase C (DusC) in complex with tRNAPheX-ray diffraction2.12015-04-22
34YCO|1|FTransfer RNAtRNApheEscherichia coliBacteriaRF00005E. coli dihydrouridine synthase C (DusC) in complex with tRNAPheX-ray diffraction2.12015-04-22
43FOZ|1|CtRNA(Phe)Structure of E. coli Isopentenyl-tRNA transferase in complex with E. coli tRNA(Phe)X-ray diffraction2.52009-01-20
54WOI|1|DWTransfer RNAMessenger RNA, Phenylalanine specific transfer RNA, tRNA-PheEscherichia coliBacteriaRF000054,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2X-ray diffraction32015-08-05
65NDK|1|X1Transfer RNAmRNA, tRNA-PheEscherichia coliBacteriaRF00005Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNAX-ray diffraction2.952017-12-13
74V9H|1|AVTransfer RNAmRNA, PE hybrid state tRNA PheEscherichia coliBacteriaRF00005Crystal structure of the ribosome bound to elongation factor G in the guanosine triphosphatase stateX-ray diffraction2.862014-07-09
83L0U|1|ATransfer RNAUnmodified tRNAPheEscherichia coliBacteriaRF00005The crystal structure of unmodified tRNAPhe from Escherichia coliX-ray diffraction32010-03-16
92ZM5|1|CTransfer RNAtRNA(Phe)Escherichia coliBacteriaRF00005Crystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe)X-ray diffraction2.552009-04-14
105NDK|1|X4Transfer RNAmRNA, tRNA-PheEscherichia coliBacteriaRF00005Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNAX-ray diffraction2.952017-12-13
114V5R|1|CVTransfer RNAE-SITE TRNA PHE OR P-SITE TRNA PHE, MRNAEscherichia coliBacteriaRF00005The crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome.X-ray diffraction3.12014-07-09
124V9D|1|BVTransfer RNAmessenger RNA, phenylalanine specific transfer RNAEscherichia coliBacteriaRF00005Structures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-ray diffraction32014-07-09
134V5R|1|AVTransfer RNAE-SITE TRNA PHE OR P-SITE TRNA PHE, MRNAEscherichia coliBacteriaRF00005The crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome.X-ray diffraction3.12014-07-09
144V5P|1|AVTransfer RNAE-SITE TRNA PHE OR P-SITE TRNA PHE, MRNAEscherichia coliBacteriaRF00005The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosomeX-ray diffraction3.12014-07-09
154V5P|1|CVTransfer RNAE-SITE TRNA PHE OR P-SITE TRNA PHE, MRNAEscherichia coliBacteriaRF00005The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosomeX-ray diffraction3.12014-07-09
162ZXU|1|CTransfer RNAtRNA(Phe)Escherichia coliBacteriaRF00005Crystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe) and DMASPPX-ray diffraction2.752009-05-26
174V6F|1|CCTransfer RNAMRNA, TRNA-PHE WITH UNMODIFIED NUCLEOTIDES EXCEPT FOR MIA37Escherichia coliBacteriaRF00005Elongation complex of the 70S ribosome with three tRNAs and mRNA.X-ray diffraction3.12014-07-09
185NDJ|1|X1Transfer RNAmRNA, tRNA-PheEscherichia coliBacteriaRF00005Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)X-ray diffraction3.152018-05-02
193FOZ|1|DtRNA(Phe)Structure of E. coli Isopentenyl-tRNA transferase in complex with E. coli tRNA(Phe)X-ray diffraction2.52009-01-20
205NDJ|1|X4Transfer RNAmRNA, tRNA-PheEscherichia coliBacteriaRF00005Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)X-ray diffraction3.152018-05-02
214V5S|1|CVTransfer RNAE-SITE TRNA PHE OR P-SITE TRNA PHE, MRNAEscherichia coliBacteriaRF00005The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome.X-ray diffraction3.12014-07-09
224WQU|1|BWTransfer RNAmRNA, P-site tRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycinX-ray diffraction2.82015-01-28
234W2E|1|wTransfer RNAmRNA, P-site tRNAEscherichia coliBacteriaRF00005Crystal structure of Elongation Factor 4 (EF4/LepA) bound to the Thermus thermophilus 70S ribosomeX-ray diffraction2.92014-10-01
244V5Q|1|AVTransfer RNAE-SITE TRNA PHE OR P-SITE TRNA PHE, MRNAEscherichia coliBacteriaRF00005The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosomeX-ray diffraction3.12014-07-09
254V5S|1|AVTransfer RNAE-SITE TRNA PHE OR P-SITE TRNA PHE, MRNAEscherichia coliBacteriaRF00005The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome.X-ray diffraction3.12014-07-09
264V5E|1|CVTransfer RNAE-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES), MRNAEscherichia coliBacteriaRF00005Insights into translational termination from the structure of RF2 bound to the ribosomeX-ray diffraction3.452014-07-09
274WQF|1|BWTransfer RNAmRNA, P-site tRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational stateX-ray diffraction2.82015-01-28
286C5L|1|AVTransfer RNAE-site tRNA PHE OR P-site tRNA PHE (unmodified bases), mRNAEscherichia coliBacteriaRF00005Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)X-ray diffraction3.22018-02-21
295J4B|1|1yTransfer RNAA-site and E-site tRNAsEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolutionX-ray diffraction2.62016-04-27
306CFJ|1|1wTransfer RNAA-site and E-site tRNAs, mRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolutionX-ray diffraction2.82018-03-07
314V5E|1|AVTransfer RNAE-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES), MRNAEscherichia coliBacteriaRF00005Insights into translational termination from the structure of RF2 bound to the ribosomeX-ray diffraction3.452014-07-09
325W4K|1|1yTransfer RNAtRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolutionX-ray diffraction2.72017-08-30
334V5J|1|CVTransfer RNAE-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES), MRNAEscherichia coliBacteriaRF00005Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide releaseX-ray diffraction3.12014-07-09
344V5Q|1|CVTransfer RNAE-SITE TRNA PHE OR P-SITE TRNA PHE, MRNAEscherichia coliBacteriaRF00005The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosomeX-ray diffraction3.12014-07-09
356C5L|1|CVTransfer RNAE-site tRNA PHE OR P-site tRNA PHE (unmodified bases), mRNAEscherichia coliBacteriaRF00005Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)X-ray diffraction3.22018-02-21
365WIT|1|1wTransfer RNAA-site tRNA, mRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolutionX-ray diffraction2.62018-02-14
376CFJ|1|1yTransfer RNAA-site and E-site tRNAsEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolutionX-ray diffraction2.82018-03-07
386CFJ|1|2wTransfer RNAA-site and E-site tRNAs, mRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolutionX-ray diffraction2.82018-03-07
395J4C|1|1wTransfer RNAA-site and E-site tRNAs, mRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (soaked) and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolutionX-ray diffraction2.82016-04-27
404V6F|1|BCTransfer RNAMRNA, TRNA-PHE WITH UNMODIFIED NUCLEOTIDES EXCEPT FOR MIA37Escherichia coliBacteriaRF00005Elongation complex of the 70S ribosome with three tRNAs and mRNA.X-ray diffraction3.12014-07-09
415WIS|1|1yTransfer RNAA-site and E-site tRNAsEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with methymycin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolutionX-ray diffraction2.72018-02-14
425J4C|1|1yTransfer RNAA-site and E-site tRNAsEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (soaked) and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolutionX-ray diffraction2.82016-04-27
434WQU|1|DWTransfer RNAmRNA, P-site tRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycinX-ray diffraction2.82015-01-28
444V5D|1|CVTransfer RNAMRNA, P AND A-SITE PHE-TRNA PHEEscherichia coliBacteriaRF00005Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.X-ray diffraction3.52014-07-09
454V5D|1|AVTransfer RNAMRNA, P AND A-SITE PHE-TRNA PHEEscherichia coliBacteriaRF00005Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.X-ray diffraction3.52014-07-09
466CFJ|1|2yTransfer RNAA-site and E-site tRNAsEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolutionX-ray diffraction2.82018-03-07
475WIS|1|1wTransfer RNAA-site and E-site tRNAs, mRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with methymycin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolutionX-ray diffraction2.72018-02-14
484WT1|1|1KTransfer RNAmRNA, tRNA-PheEscherichia coliBacteriaRF00005Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-siteX-ray diffraction3.052015-06-10
495J4B|1|1wTransfer RNAA-site and E-site tRNAs, mRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolutionX-ray diffraction2.62016-04-27
505NDK|1|W1Transfer RNAmRNA, tRNA-PheEscherichia coliBacteriaRF00005Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNAX-ray diffraction2.952017-12-13
514V51|1|AWTransfer RNAE-SITE TRNA PHE OR A-SITE TRNA PHE (UNMODIFIED BASES)Escherichia coliBacteriaRF00005Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycinX-ray diffraction2.82014-07-09
524WT1|1|3KTransfer RNAtRNA-PheEscherichia coliBacteriaRF00005Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-siteX-ray diffraction3.052015-06-10
535J4C|1|2wTransfer RNAA-site and E-site tRNAs, mRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (soaked) and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolutionX-ray diffraction2.82016-04-27
544V5J|1|AVTransfer RNAE-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES), MRNAEscherichia coliBacteriaRF00005Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide releaseX-ray diffraction3.12014-07-09
554WQF|1|DWTransfer RNAmRNA, P-site tRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational stateX-ray diffraction2.82015-01-28
564V9C|1|AVTransfer RNAMessenger RNA, mRNA, Phenylalanine specific transfer RNA, tRNA-PheEscherichia coliBacteriaRF00005Allosteric control of the ribosome by small-molecule antibioticsX-ray diffraction3.32014-07-09
575J4B|1|2wTransfer RNAA-site and E-site tRNAs, mRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolutionX-ray diffraction2.62016-04-27
585J4B|1|2yTransfer RNAA-site and E-site tRNAsEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolutionX-ray diffraction2.62016-04-27
595J4C|1|2yTransfer RNAA-site and E-site tRNAsEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (soaked) and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolutionX-ray diffraction2.82016-04-27
605W4K|1|1wTransfer RNAmRNA, tRNA, A-site and E-site tRNAsEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolutionX-ray diffraction2.72017-08-30
615NDK|1|W4Transfer RNAmRNA, tRNA-PheEscherichia coliBacteriaRF00005Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNAX-ray diffraction2.952017-12-13
624WOI|1|AXTransfer RNAMessenger RNA, Phenylalanine specific transfer RNA, tRNA-PheEscherichia coliBacteriaRF000054,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2X-ray diffraction32015-08-05
636ND5|1|1yTransfer RNAA-site and E-site tRNAsEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with chloramphenicol and bound to mRNA and A-, P-, and E-site tRNAs at 2.60A resolutionX-ray diffraction2.62019-03-20
644WQR|1|3KTransfer RNAtRNA-PheEscherichia coliBacteriaRF00005Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site.X-ray diffraction3.152015-06-10
654W2G|1|AWTransfer RNAA/P-site tRNA, mRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sitesX-ray diffraction2.552014-10-15
665WIS|1|2yTransfer RNAA-site and E-site tRNAsEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with methymycin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolutionX-ray diffraction2.72018-02-14
675WIT|1|2wTransfer RNAA-site tRNA, mRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolutionX-ray diffraction2.62018-02-14
685DOY|1|1yTransfer RNAA-site and E-site tRNAsEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolutionX-ray diffraction2.62015-12-30
695W4K|1|2yTransfer RNAtRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolutionX-ray diffraction2.72017-08-30
702ZM5|1|DTransfer RNAtRNA(Phe)Escherichia coliBacteriaRF00005Crystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe)X-ray diffraction2.552009-04-14
714V9D|1|AVTransfer RNAmessenger RNA, phenylalanine specific transfer RNAEscherichia coliBacteriaRF00005Structures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-ray diffraction32014-07-09
724Y4P|1|1yTransfer RNAA-site and E-site tRNAsEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolutionX-ray diffraction2.52015-03-18
734Z3S|1|1yTransfer RNAA/E-site tRNAsEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolutionX-ray diffraction2.652015-06-03
744WSD|1|1KTransfer RNAmRNA, tRNA-PheEscherichia coliBacteriaRF00005Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.X-ray diffraction2.952015-06-10
755DOY|1|1wTransfer RNAA-site and E-site tRNAs, mRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolutionX-ray diffraction2.62015-12-30
764WT1|1|3LTransfer RNAtRNA-PheEscherichia coliBacteriaRF00005Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-siteX-ray diffraction3.052015-06-10
774V5S|1|AWTransfer RNAE-SITE TRNA PHE OR P-SITE TRNA PHEEscherichia coliBacteriaRF00005The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome.X-ray diffraction3.12014-07-09
784V51|1|CWTransfer RNAE-SITE TRNA PHE OR A-SITE TRNA PHE (UNMODIFIED BASES)Escherichia coliBacteriaRF00005Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycinX-ray diffraction2.82014-07-09
795DOY|1|2yTransfer RNAA-site and E-site tRNAsEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolutionX-ray diffraction2.62015-12-30
806ND5|1|1wTransfer RNAA-site and E-site tRNAs, mRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with chloramphenicol and bound to mRNA and A-, P-, and E-site tRNAs at 2.60A resolutionX-ray diffraction2.62019-03-20
814W2I|1|AWTransfer RNAA/P-site tRNA, mRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sitesX-ray diffraction2.72014-10-15
824WSD|1|3LTransfer RNAtRNA-PheEscherichia coliBacteriaRF00005Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.X-ray diffraction2.952015-06-10
834V6F|1|BDTransfer RNAMRNA, TRNA-PHE WITH UNMODIFIED NUCLEOTIDES EXCEPT FOR MIA37Escherichia coliBacteriaRF00005Elongation complex of the 70S ribosome with three tRNAs and mRNA.X-ray diffraction3.12014-07-09
844WQR|1|3LTransfer RNAtRNA-PheEscherichia coliBacteriaRF00005Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site.X-ray diffraction3.152015-06-10
854W2I|1|CWTransfer RNAA/P-site tRNA, mRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sitesX-ray diffraction2.72014-10-15
864Z3S|1|2yTransfer RNAA/E-site tRNAsEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolutionX-ray diffraction2.652015-06-03
874Z3S|1|1wTransfer RNAA/E-site tRNAs, mRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolutionX-ray diffraction2.652015-06-03
885W4K|1|2wTransfer RNAmRNA, tRNA, A-site and E-site tRNAsEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolutionX-ray diffraction2.72017-08-30
894V5S|1|CWTransfer RNAE-SITE TRNA PHE OR P-SITE TRNA PHEEscherichia coliBacteriaRF00005The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome.X-ray diffraction3.12014-07-09
901VY4|1|AWTransfer RNAA-site tRNA, mRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.X-ray diffraction2.62014-08-20
916ND5|1|2yTransfer RNAA-site and E-site tRNAsEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with chloramphenicol and bound to mRNA and A-, P-, and E-site tRNAs at 2.60A resolutionX-ray diffraction2.62019-03-20
924WPO|1|BYTransfer RNAE-site tRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational stateX-ray diffraction2.82015-01-28
934Y4P|1|2yTransfer RNAA-site and E-site tRNAsEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolutionX-ray diffraction2.52015-03-18
944WRO|1|1KTransfer RNARNA (30-MER), tRNA-PheEscherichia coliBacteriaRF00005Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-siteX-ray diffraction3.052015-06-10
954V5D|1|CWTransfer RNAE-SITE TRNA PHEEscherichia coliBacteriaRF00005Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.X-ray diffraction3.52014-07-09
964V5L|1|AVTransfer RNAE-SITE TRNA PHE OR P-SITE TRNA PHE, MRNAEscherichia coliBacteriaRF00005The structure of EF-Tu and aminoacyl-tRNA bound to the 70S ribosome with a GTP analogX-ray diffraction3.12014-07-09
974W2G|1|CWTransfer RNAA/P-site tRNA, mRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sitesX-ray diffraction2.552014-10-15
984V5D|1|AWTransfer RNAE-SITE TRNA PHEEscherichia coliBacteriaRF00005Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.X-ray diffraction3.52014-07-09
994WSD|1|3KTransfer RNAtRNA-PheEscherichia coliBacteriaRF00005Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.X-ray diffraction2.952015-06-10
1004W2I|1|AYTransfer RNAA/P-site tRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sitesX-ray diffraction2.72014-10-15
1015NDJ|1|W1Transfer RNAmRNA, tRNA-PheEscherichia coliBacteriaRF00005Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)X-ray diffraction3.152018-05-02
1024W2F|1|AWTransfer RNAA/P-site tRNA, mRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-ray diffraction2.42014-10-15
1034Y4P|1|1wTransfer RNAA-site and E-site tRNAs, mRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolutionX-ray diffraction2.52015-03-18
1044WT1|1|1LTransfer RNAtRNA-PheEscherichia coliBacteriaRF00005Complex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-siteX-ray diffraction3.052015-06-10
1054Z3S|1|2wTransfer RNAA/E-site tRNAs, mRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolutionX-ray diffraction2.652015-06-03
1064W2I|1|CYTransfer RNAA/P-site tRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sitesX-ray diffraction2.72014-10-15
1071VY4|1|AYTransfer RNAE-site tRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.X-ray diffraction2.62014-08-20
1084V5E|1|CWTransfer RNAE-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES)Escherichia coliBacteriaRF00005Insights into translational termination from the structure of RF2 bound to the ribosomeX-ray diffraction3.452014-07-09
1094V5D|1|AYTransfer RNAMRNA, P AND A-SITE PHE-TRNA PHEEscherichia coliBacteriaRF00005Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.X-ray diffraction3.52014-07-09
1105NDJ|1|W4Transfer RNAmRNA, tRNA-PheEscherichia coliBacteriaRF00005Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)X-ray diffraction3.152018-05-02
1114WZO|1|3KTransfer RNAtRNA-PheEscherichia coliBacteriaRF00005Complex of 70S ribosome with tRNA-fMet and mRNAX-ray diffraction3.32015-06-10
1124V5J|1|CWTransfer RNAE-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES)Escherichia coliBacteriaRF00005Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide releaseX-ray diffraction3.12014-07-09
1134W2G|1|AYTransfer RNAA/P-site tRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sitesX-ray diffraction2.552014-10-15
1144WPO|1|DYTransfer RNAE-site tRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational stateX-ray diffraction2.82015-01-28
1154V5G|1|AVTransfer RNAE-SITE TRNA PHE OR P-SITE TRNA PHE, MRNAEscherichia coliBacteriaRF00005The crystal structure of the 70S ribosome bound to EF-Tu and tRNAX-ray diffraction3.62014-07-09
1164V5G|1|CVTransfer RNAE-SITE TRNA PHE OR P-SITE TRNA PHE, MRNAEscherichia coliBacteriaRF00005The crystal structure of the 70S ribosome bound to EF-Tu and tRNAX-ray diffraction3.62014-07-09
1174V5D|1|CYTransfer RNAMRNA, P AND A-SITE PHE-TRNA PHEEscherichia coliBacteriaRF00005Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.X-ray diffraction3.52014-07-09
1185WIS|1|2wTransfer RNAA-site and E-site tRNAs, mRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with methymycin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolutionX-ray diffraction2.72018-02-14
1194V5J|1|AWTransfer RNAE-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES)Escherichia coliBacteriaRF00005Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide releaseX-ray diffraction3.12014-07-09
1204V5Q|1|AWTransfer RNAE-SITE TRNA PHE OR P-SITE TRNA PHEEscherichia coliBacteriaRF00005The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosomeX-ray diffraction3.12014-07-09
1212ZXU|1|DTransfer RNAtRNA(Phe)Escherichia coliBacteriaRF00005Crystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe) and DMASPPX-ray diffraction2.752009-05-26
1224V5Q|1|CWTransfer RNAE-SITE TRNA PHE OR P-SITE TRNA PHEEscherichia coliBacteriaRF00005The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosomeX-ray diffraction3.12014-07-09
1235NDK|1|V4Transfer RNAtRNA-PheEscherichia coliBacteriaRF00005Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNAX-ray diffraction2.952017-12-13
1244WQR|1|1KTransfer RNAmRNA, tRNA-PheEscherichia coliBacteriaRF00005Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site.X-ray diffraction3.152015-06-10
1254W2G|1|CYTransfer RNAA/P-site tRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sitesX-ray diffraction2.552014-10-15
1264V6F|1|CDTransfer RNAMRNA, TRNA-PHE WITH UNMODIFIED NUCLEOTIDES EXCEPT FOR MIA37Escherichia coliBacteriaRF00005Elongation complex of the 70S ribosome with three tRNAs and mRNA.X-ray diffraction3.12014-07-09
1275NDJ|1|V4Transfer RNAtRNA-PheEscherichia coliBacteriaRF00005Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)X-ray diffraction3.152018-05-02
1285WIT|1|1yTransfer RNAE-site tRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolutionX-ray diffraction2.62018-02-14
1294WZO|1|3LTransfer RNAtRNA-PheEscherichia coliBacteriaRF00005Complex of 70S ribosome with tRNA-fMet and mRNAX-ray diffraction3.32015-06-10
1304V5G|1|AWTransfer RNAE-SITE TRNA PHE OR P-SITE TRNA PHEEscherichia coliBacteriaRF00005The crystal structure of the 70S ribosome bound to EF-Tu and tRNAX-ray diffraction3.62014-07-09
1316ND5|1|2wTransfer RNAA-site and E-site tRNAs, mRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with chloramphenicol and bound to mRNA and A-, P-, and E-site tRNAs at 2.60A resolutionX-ray diffraction2.62019-03-20
1324W2F|1|AYTransfer RNAA/P-site tRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-ray diffraction2.42014-10-15
1334Y4P|1|2wTransfer RNAA-site and E-site tRNAs, mRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolutionX-ray diffraction2.52015-03-18
1346C5L|1|CWTransfer RNAE-site tRNA PHE OR P-site tRNA PHE (unmodified bases)Escherichia coliBacteriaRF00005Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)X-ray diffraction3.22018-02-21
1356C5L|1|AWTransfer RNAE-site tRNA PHE OR P-site tRNA PHE (unmodified bases)Escherichia coliBacteriaRF00005Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)X-ray diffraction3.22018-02-21
1365DOY|1|2wTransfer RNAA-site and E-site tRNAs, mRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolutionX-ray diffraction2.62015-12-30
1371VY5|1|AWTransfer RNAA-site tRNA, mRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.X-ray diffraction2.552014-08-20
1384V6F|1|CBTransfer RNAMRNA, TRNA-PHE WITH UNMODIFIED NUCLEOTIDES EXCEPT FOR MIA37Escherichia coliBacteriaRF00005Elongation complex of the 70S ribosome with three tRNAs and mRNA.X-ray diffraction3.12014-07-09
1391VY4|1|CYTransfer RNAE-site tRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.X-ray diffraction2.62014-08-20
1405WIT|1|2yTransfer RNAE-site tRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolutionX-ray diffraction2.62018-02-14
1414WSD|1|1LTransfer RNAmRNA, tRNA-PheEscherichia coliBacteriaRF00005Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.X-ray diffraction2.952015-06-10
1421VY7|1|AYTransfer RNAE-site tRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.X-ray diffraction2.82014-08-20
1435NDK|1|V1Transfer RNAtRNA-PheEscherichia coliBacteriaRF00005Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNAX-ray diffraction2.952017-12-13
1444V5C|1|AWTransfer RNAE-SITE TRNA PHEEscherichia coliBacteriaRF00005Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.X-ray diffraction3.32014-07-09
1454WRO|1|3LTransfer RNAtRNA-PheEscherichia coliBacteriaRF00005Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-siteX-ray diffraction3.052015-06-10
1464V5G|1|CWTransfer RNAE-SITE TRNA PHE OR P-SITE TRNA PHEEscherichia coliBacteriaRF00005The crystal structure of the 70S ribosome bound to EF-Tu and tRNAX-ray diffraction3.62014-07-09
1474W2F|1|CWTransfer RNAA/P-site tRNA, mRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-ray diffraction2.42014-10-15
1484V5P|1|AWTransfer RNAE-SITE TRNA PHE OR P-SITE TRNA PHEEscherichia coliBacteriaRF00005The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosomeX-ray diffraction3.12014-07-09
1494WRO|1|1LTransfer RNAtRNA-PheEscherichia coliBacteriaRF00005Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-siteX-ray diffraction3.052015-06-10
1504V5R|1|CWTransfer RNAE-SITE TRNA PHE OR P-SITE TRNA PHEEscherichia coliBacteriaRF00005The crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome.X-ray diffraction3.12014-07-09
1514W2F|1|CYTransfer RNAA/P-site tRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-ray diffraction2.42014-10-15
1524V5C|1|CYTransfer RNAA-SITE PHE-TRNA PHE, MRNAEscherichia coliBacteriaRF00005Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.X-ray diffraction3.32014-07-09
1534WPO|1|BWTransfer RNAA-site tRNA, mRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational stateX-ray diffraction2.82015-01-28
1544V5R|1|AWTransfer RNAE-SITE TRNA PHE OR P-SITE TRNA PHEEscherichia coliBacteriaRF00005The crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome.X-ray diffraction3.12014-07-09
1554V5C|1|AYTransfer RNAA-SITE PHE-TRNA PHE, MRNAEscherichia coliBacteriaRF00005Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.X-ray diffraction3.32014-07-09
1564WRO|1|3KTransfer RNAtRNA-PheEscherichia coliBacteriaRF00005Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-siteX-ray diffraction3.052015-06-10
1574V6F|1|BBTransfer RNAMRNA, TRNA-PHE WITH UNMODIFIED NUCLEOTIDES EXCEPT FOR MIA37Escherichia coliBacteriaRF00005Elongation complex of the 70S ribosome with three tRNAs and mRNA.X-ray diffraction3.12014-07-09
1584V5P|1|CWTransfer RNAE-SITE TRNA PHE OR P-SITE TRNA PHEEscherichia coliBacteriaRF00005The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosomeX-ray diffraction3.12014-07-09
1595NDJ|1|V1Transfer RNAtRNA-PheEscherichia coliBacteriaRF00005Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)X-ray diffraction3.152018-05-02
1604P6F|1|QWTransfer RNAE-Site tRNA-Phe or A-Site tRNA-PheEscherichia coliBacteriaRF00005Crystal structure of the peptolide 12C bound to bacterial ribosomeX-ray diffraction3.62014-10-01
1611VY5|1|AYTransfer RNAE-site tRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.X-ray diffraction2.552014-08-20
1621VY7|1|CYTransfer RNAE-site tRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.X-ray diffraction2.82014-08-20
1631VY4|1|CWTransfer RNAA-site tRNA, mRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.X-ray diffraction2.62014-08-20
1644V5E|1|AWTransfer RNAE-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES)Escherichia coliBacteriaRF00005Insights into translational termination from the structure of RF2 bound to the ribosomeX-ray diffraction3.452014-07-09
1654V97|1|AWTransfer RNAE-SITE TRNA PHE OR A-SITE tRNA PheEscherichia coliBacteriaRF00005Crystal structure of the bacterial ribosome ram mutation G299A.X-ray diffraction3.522014-07-09
1664V4I|1|zTransfer RNAMRNA, P-site PHE-tRNAEscherichia coliBacteriaRF00005Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements.X-ray diffraction3.712014-07-09
1674P6F|1|XWTransfer RNAE-Site tRNA-Phe or A-Site tRNA-PheEscherichia coliBacteriaRF00005Crystal structure of the peptolide 12C bound to bacterial ribosomeX-ray diffraction3.62014-10-01
1681VY5|1|CWTransfer RNAA-site tRNA, mRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.X-ray diffraction2.552014-08-20
1694V5C|1|CWTransfer RNAE-SITE TRNA PHEEscherichia coliBacteriaRF00005Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.X-ray diffraction3.32014-07-09
1701VY5|1|CYTransfer RNAE-site tRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.X-ray diffraction2.552014-08-20
1714WQR|1|1LTransfer RNAtRNA-PheEscherichia coliBacteriaRF00005Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site.X-ray diffraction3.152015-06-10
1724V9I|1|AWTransfer RNAE-SITE tRNAEscherichia coliBacteriaRF00005Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codonX-ray diffraction3.32014-07-09
1734V9I|1|CWTransfer RNAE-SITE tRNAEscherichia coliBacteriaRF00005Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codonX-ray diffraction3.32014-07-09
1744WPO|1|DWTransfer RNAA-site tRNA, mRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational stateX-ray diffraction2.82015-01-28
1754V97|1|CWTransfer RNAE-SITE TRNA PHE OR A-SITE tRNA PheEscherichia coliBacteriaRF00005Crystal structure of the bacterial ribosome ram mutation G299A.X-ray diffraction3.522014-07-09
1764V5L|1|AWTransfer RNAE-SITE TRNA PHE OR P-SITE TRNA PHEEscherichia coliBacteriaRF00005The structure of EF-Tu and aminoacyl-tRNA bound to the 70S ribosome with a GTP analogX-ray diffraction3.12014-07-09
1774W2H|1|AYTransfer RNAE-site tRNA Acceptor StemEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P siteX-ray diffraction2.72014-10-15
1784V9C|1|CVTransfer RNAMessenger RNA, mRNA, Phenylalanine specific transfer RNA, tRNA-PheEscherichia coliBacteriaRF00005Allosteric control of the ribosome by small-molecule antibioticsX-ray diffraction3.32014-07-09
1794V8J|1|AWTransfer RNAtRNA-PheEscherichia coliBacteriaRF00005Crystal structure of the bacterial ribosome ram mutation G347U.X-ray diffraction3.92014-07-09
1804WQU|1|BYTransfer RNAP-site tRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycinX-ray diffraction2.82015-01-28
1814W2H|1|CYTransfer RNAE-site tRNA Acceptor StemEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P siteX-ray diffraction2.72014-10-15
1824V8J|1|CWTransfer RNAtRNA-PheEscherichia coliBacteriaRF00005Crystal structure of the bacterial ribosome ram mutation G347U.X-ray diffraction3.92014-07-09
1834W2E|1|xTransfer RNAE-site tRNAEscherichia coliBacteriaRF00005Crystal structure of Elongation Factor 4 (EF4/LepA) bound to the Thermus thermophilus 70S ribosomeX-ray diffraction2.92014-10-01
1844V4Y|1|ADTransfer RNAmRNA, tRNA PHE (unmodified bases)Escherichia coliBacteriaRF00005Crystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex.X-ray diffraction5.52014-07-09
1854WQU|1|DYTransfer RNAP-site tRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycinX-ray diffraction2.82015-01-28
1864V4Y|1|ACTransfer RNAmRNA, tRNA PHE (unmodified bases)Escherichia coliBacteriaRF00005Crystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex.X-ray diffraction5.52014-07-09
1874WQF|1|BYTransfer RNAP-site tRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational stateX-ray diffraction2.82015-01-28
1884WQF|1|DYTransfer RNAP-site tRNAEscherichia coliBacteriaRF00005Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational stateX-ray diffraction2.82015-01-28
1894V4Y|1|ABTransfer RNAmRNA, tRNA PHE (unmodified bases)Escherichia coliBacteriaRF00005Crystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex.X-ray diffraction5.52014-07-09
1906AZ1|1|2Transfer RNAmRNA, tRNA-PheEscherichia coliBacteriaRF00005Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycinElectron microscopy2.72017-12-06
1916AZ1|1|4Transfer RNAE-site tRNAEscherichia coliBacteriaRF00005Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycinElectron microscopy2.72017-12-06
1923R8O|1|Vmessenger RNA, phenylalanine specific transfer RNAStructures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-ray diffraction32011-06-01
1933R8N|1|Vmessenger RNA, phenylalanine specific transfer RNAStructures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-ray diffraction32011-06-01
1945AFI|1|yTransfer RNAA/T-site Phe-tRNAPhe, mRNAEscherichia coliBacteriaRF000052.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EMElectron microscopy2.92015-03-11
1955UYM|1|YTransfer RNAmRNA, Phe-tRNAPheEscherichia coliBacteriaRF0000570S ribosome bound with cognate ternary complex base-paired to A site codon, closed 30S (Structure III)Electron microscopy3.22017-06-07
1965UQ8|1|zTransfer RNAE-site tRNA PheEscherichia coliBacteriaRF0000570S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)Electron microscopy3.22018-03-07
1975WDT|1|yTransfer RNAmRNA, tRNA-PheEscherichia coliBacteriaRF0000570S ribosome-EF-Tu H84A complex with GppNHpElectron microscopy32018-04-25
1985WFS|1|yTransfer RNAmRNA, Phe-tRNA-PheEscherichia coliBacteriaRF0000570S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C4)Electron microscopy32018-05-02
1995WE4|1|yTransfer RNAmRNA, Phe-tRNA-PheEscherichia coliBacteriaRF0000570S ribosome-EF-Tu wt complex with GppNHpElectron microscopy3.12018-04-25
2002JL7|1|VE-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES), MRNAInsights into translational termination from the structure of RF2 bound to the ribosome (part 3 of 4). This file contains the 30S subunit.X-ray diffraction3.452008-11-04
2012JL5|1|VE-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES), MRNAInsights into translational termination from the structure of RF2 bound to the ribosome (Part 1 of 4). This file contains the 30S subunit.X-ray diffraction3.452008-11-04
2022JL7|1|WE-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES)Insights into translational termination from the structure of RF2 bound to the ribosome (part 3 of 4). This file contains the 30S subunit.X-ray diffraction3.452008-11-04
2032JL5|1|WE-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES)Insights into translational termination from the structure of RF2 bound to the ribosome (Part 1 of 4). This file contains the 30S subunit.X-ray diffraction3.452008-11-04
2043JCE|1|6mRNA, tRNAsynthetic constructStructure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)Electron microscopy3.22016-01-13
2056BU8|1|YTransfer RNAmRNA, tRNAPheEscherichia coliBacteriaRF0000570S ribosome with S1 domains 1 and 2 (Class 1)Electron microscopy3.52018-01-31
2065UQ7|1|zTransfer RNAE-site tRNA PheEscherichia coliBacteriaRF0000570S ribosome complex with dnaX mRNA stemloop and E-site tRNA ('in' conformation)Electron microscopy3.52018-03-07
2075UYL|1|YTransfer RNAmRNA, tRNAPheEscherichia coliBacteriaRF0000570S ribosome bound with cognate ternary complex base-paired to A site codon (Structure II)Electron microscopy3.62017-06-14
2085IQR|1|4Transfer RNAE-site tRNA(Phe)Escherichia coliBacteriaRF00005Structure of RelA bound to the 70S ribosomeElectron microscopy32016-05-04
2095WE6|1|yTransfer RNAmRNA, Phe-tRNA-PheEscherichia coliBacteriaRF0000570S ribosome-EF-Tu H84A complex with GTP and cognate tRNAElectron microscopy3.42018-04-25
2105WFK|1|yTransfer RNAmRNA, Phe-tRNA-PheEscherichia coliBacteriaRF0000570S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C3)Electron microscopy3.42018-05-02
2115WF0|1|yTransfer RNAPhe-tRNA-PheEscherichia coliBacteriaRF0000570S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C2)Electron microscopy3.62018-05-02
2125UYK|1|YTransfer RNAtRNAPheEscherichia coliBacteriaRF0000570S ribosome bound with cognate ternary complex not base-paired to A site codon (Structure I)Electron microscopy3.92017-06-07
2135OT7|1|2Transfer RNAtRNA-PheEscherichia coliBacteriaRF00005Elongation factor G-ribosome complex captures in the absence of inhibitors.Electron microscopy3.82018-02-14
2145KPX|1|30Transfer RNAA-site tRNAPhe, mRNAEscherichia coliBacteriaRF00005Structure of RelA bound to ribosome in presence of A/R tRNA (Structure IV)Electron microscopy3.92016-09-28
2155KPW|1|30Transfer RNAA-site tRNAPhe, mRNAEscherichia coliBacteriaRF00005Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III)Electron microscopy3.92016-09-28
2163J73|1|S5A/P tRNA, Messenger RNAStructure of the translating mammalian ribosome-Sec61 complexElectron microscopy3.92014-06-18
2171VX2|1|5A/P tRNA, Messenger RNAStructure of the translating mammalian ribosome-Sec61 complex. This entry contains the small ribosomal subunit.Electron microscopy3.92014-06-18
2186Q95|1|8Transfer RNAtRNA-PheEscherichia coliBacteriaRF00005Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosomeElectron microscopy3.72019-02-27
2193JCE|1|9tRNAsynthetic constructStructure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)Electron microscopy3.22016-01-13
2205KPV|1|30Transfer RNAA-site tRNAPhe, mRNAEscherichia coliBacteriaRF00005Structure of RelA bound to ribosome in presence of A/R tRNA (Structure II)Electron microscopy4.12016-09-28
2215IQR|1|6Transfer RNAA/T tRNA(Phe), mRNAEscherichia coliBacteriaRF00005Structure of RelA bound to the 70S ribosomeElectron microscopy32016-05-04
2223JCD|1|8mRNA, tRNAsynthetic constructStructure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)Electron microscopy3.72016-01-13
2233JCD|1|9tRNAsynthetic constructStructure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)Electron microscopy3.72016-01-13
2243JBV|1|VTransfer RNARNA (5'-R(P*CP*UP*GP*GP*CP*CP*CP*UP*CP*AP*A)-3'), RNA (76-MER)Escherichia coliBacteriaRF00005Mechanisms of Ribosome Stalling by SecM at Multiple Elongation StepsElectron microscopy3.322016-01-27
2254V69|1|AWTransfer RNAP-site tRNA fMet (Unmodified bases except for Thymine 54)Escherichia coliBacteriaRF00005Ternary complex-bound E.coli 70S ribosome.Electron microscopy6.72014-07-09
2264V7D|1|BVTransfer RNAmRNA, tRNAEscherichia coliBacteriaRF00005Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA*EF-G structure)Electron microscopy7.62014-07-09
2274V7D|1|BWTransfer RNAmRNA, tRNAEscherichia coliBacteriaRF00005Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA*EF-G structure)Electron microscopy7.62014-07-09
2284V7C|1|AWTransfer RNAmRNA, tRNAEscherichia coliBacteriaRF00005Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA structure)Electron microscopy7.62014-07-09
2294V7C|1|AVTransfer RNAmRNA, tRNAEscherichia coliBacteriaRF00005Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA structure)Electron microscopy7.62014-07-09
2304V6K|1|BBTransfer RNAA/T-site tRNA Phe, mRNAEscherichia coliBacteriaRF00005Structural insights into cognate vs. near-cognate discrimination during decoding.Electron microscopy8.252014-07-09
2314V6K|1|BETransfer RNAA/T-site tRNA Phe, mRNAEscherichia coliBacteriaRF00005Structural insights into cognate vs. near-cognate discrimination during decoding.Electron microscopy8.252014-07-09
2323J46|1|aTransfer RNAA-tRNAEscherichia coliBacteriaRF00005Structure of the SecY protein translocation channel in actionElectron microscopy10.12013-10-23
2334V6L|1|AETransfer RNAA/T-site tRNA PheEscherichia coliBacteriaRF00005Structural insights into cognate vs. near-cognate discrimination during decoding.Electron microscopy13.22014-07-09
2344V6L|1|ABTransfer RNAA/T-site tRNA Phe, mRNAEscherichia coliBacteriaRF00005Structural insights into cognate vs. near-cognate discrimination during decoding.Electron microscopy13.22014-07-09

Release history

Release3.663.673.683.693.703.713.723.733.743.75
Date2019-03-222019-03-292019-04-052019-04-122019-04-192019-04-262019-05-032019-05-102019-05-172019-05-24

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_20.0_19951.28NR_20.0_19951.273.66(230) 1VX2|1|5, 1VY4|1|AW, 1VY4|1|AY, 1VY4|1|CW, 1VY4|1|CY, 1VY5|1|AW, 1VY5|1|AY, 1VY5|1|CW, 1VY5|1|CY, 1VY7|1|AY, 1VY7|1|CY, 2JL5|1|V, 2JL5|1|W, 2JL7|1|V, 2JL7|1|W, 2ZM5|1|C, 2ZM5|1|D, 2ZXU|1|C, 2ZXU|1|D, 3FOZ|1|C, 3FOZ|1|D, 3J46|1|a, 3J73|1|S5, 3JBV|1|V, 3JCD|1|8, 3JCD|1|9, 3JCE|1|6, 3JCE|1|9, 3L0U|1|A, 3R8N|1|V, 3R8O|1|V, 4P6F|1|QW, 4P6F|1|XW, 4V4I|1|z, 4V4Y|1|AB, 4V4Y|1|AC, 4V4Y|1|AD, 4V51|1|AW, 4V51|1|CW, 4V5C|1|AW, 4V5C|1|AY, 4V5C|1|CW, 4V5C|1|CY, 4V5D|1|AV, 4V5D|1|AW, 4V5D|1|AY, 4V5D|1|CV, 4V5D|1|CW, 4V5D|1|CY, 4V5E|1|AV, 4V5E|1|AW, 4V5E|1|CV, 4V5E|1|CW, 4V5G|1|AV, 4V5G|1|AW, 4V5G|1|CV, 4V5G|1|CW, 4V5J|1|AV, 4V5J|1|AW, 4V5J|1|CV, 4V5J|1|CW, 4V5L|1|AV, 4V5L|1|AW, 4V5P|1|AV, 4V5P|1|AW, 4V5P|1|CV, 4V5P|1|CW, 4V5Q|1|AV, 4V5Q|1|AW, 4V5Q|1|CV, 4V5Q|1|CW, 4V5R|1|AV, 4V5R|1|AW, 4V5R|1|CV, 4V5R|1|CW, 4V5S|1|AV, 4V5S|1|AW, 4V5S|1|CV, 4V5S|1|CW, 4V69|1|AW, 4V6F|1|BB, 4V6F|1|BC, 4V6F|1|BD, 4V6F|1|CB, 4V6F|1|CC, 4V6F|1|CD, 4V6K|1|BB, 4V6K|1|BE, 4V6L|1|AB, 4V6L|1|AE, 4V7C|1|AV, 4V7C|1|AW, 4V7D|1|BV, 4V7D|1|BW, 4V8J|1|AW, 4V8J|1|CW, 4V97|1|AW, 4V97|1|CW, 4V9C|1|AV, 4V9C|1|CV, 4V9D|1|AV, 4V9D|1|BV, 4V9H|1|AV, 4V9I|1|AW, 4V9I|1|CW, 4W2E|1|w, 4W2E|1|x, 4W2F|1|AW, 4W2F|1|AY, 4W2F|1|CW, 4W2F|1|CY, 4W2G|1|AW, 4W2G|1|AY, 4W2G|1|CW, 4W2G|1|CY, 4W2H|1|AY, 4W2H|1|CY, 4W2I|1|AW, 4W2I|1|AY, 4W2I|1|CW, 4W2I|1|CY, 4WOI|1|AX, 4WOI|1|DW, 4WPO|1|BW, 4WPO|1|BY, 4WPO|1|DW, 4WPO|1|DY, 4WQF|1|BW, 4WQF|1|BY, 4WQF|1|DW, 4WQF|1|DY, 4WQR|1|1K, 4WQR|1|1L, 4WQR|1|3K, 4WQR|1|3L, 4WQU|1|BW, 4WQU|1|BY, 4WQU|1|DW, 4WQU|1|DY, 4WRO|1|1K, 4WRO|1|1L, 4WRO|1|3K, 4WRO|1|3L, 4WSD|1|1K, 4WSD|1|1L, 4WSD|1|3K, 4WSD|1|3L, 4WT1|1|1K, 4WT1|1|1L, 4WT1|1|3K, 4WT1|1|3L, 4WZO|1|3K, 4WZO|1|3L, 4Y4P|1|1w, 4Y4P|1|1y, 4Y4P|1|2w, 4Y4P|1|2y, 4YCO|1|D, 4YCO|1|E, 4YCO|1|F, 4Z3S|1|1w, 4Z3S|1|1y, 4Z3S|1|2w, 4Z3S|1|2y, 5AFI|1|y, 5DOY|1|1w, 5DOY|1|1y, 5DOY|1|2w, 5DOY|1|2y, 5IQR|1|4, 5IQR|1|6, 5J4B|1|1w, 5J4B|1|1y, 5J4B|1|2w, 5J4B|1|2y, 5J4C|1|1w, 5J4C|1|1y, 5J4C|1|2w, 5J4C|1|2y, 5KPV|1|30, 5KPW|1|30, 5KPX|1|30, 5NDJ|1|V1, 5NDJ|1|V4, 5NDJ|1|W1, 5NDJ|1|W4, 5NDJ|1|X1, 5NDJ|1|X4, 5NDK|1|V1, 5NDK|1|V4, 5NDK|1|W1, 5NDK|1|W4, 5NDK|1|X1, 5NDK|1|X4, 5OT7|1|2, 5UQ7|1|z, 5UQ8|1|z, 5UYK|1|Y, 5UYL|1|Y, 5UYM|1|Y, 5W4K|1|1w, 5W4K|1|1y, 5W4K|1|2w, 5W4K|1|2y, 5WDT|1|y, 5WE4|1|y, 5WE6|1|y, 5WF0|1|y, 5WFK|1|y, 5WFS|1|y, 5WIS|1|1w, 5WIS|1|1y, 5WIS|1|2w, 5WIS|1|2y, 5WIT|1|1w, 5WIT|1|1y, 5WIT|1|2w, 5WIT|1|2y, 6AZ1|1|2, 6AZ1|1|4, 6BU8|1|Y, 6C5L|1|AV, 6C5L|1|AW, 6C5L|1|CV, 6C5L|1|CW, 6CFJ|1|1w, 6CFJ|1|1y, 6CFJ|1|2w, 6CFJ|1|2y, 6Q95|1|8(4) 6ND5|1|1w, 6ND5|1|1y, 6ND5|1|2w, 6ND5|1|2y(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_20.0_19951.28NR_20.0_19951.293.76(234) 1VX2|1|5, 1VY4|1|AW, 1VY4|1|AY, 1VY4|1|CW, 1VY4|1|CY, 1VY5|1|AW, 1VY5|1|AY, 1VY5|1|CW, 1VY5|1|CY, 1VY7|1|AY, 1VY7|1|CY, 2JL5|1|V, 2JL5|1|W, 2JL7|1|V, 2JL7|1|W, 2ZM5|1|C, 2ZM5|1|D, 2ZXU|1|C, 2ZXU|1|D, 3FOZ|1|C, 3FOZ|1|D, 3J46|1|a, 3J73|1|S5, 3JBV|1|V, 3JCD|1|8, 3JCD|1|9, 3JCE|1|6, 3JCE|1|9, 3L0U|1|A, 3R8N|1|V, 3R8O|1|V, 4P6F|1|QW, 4P6F|1|XW, 4V4I|1|z, 4V4Y|1|AB, 4V4Y|1|AC, 4V4Y|1|AD, 4V51|1|AW, 4V51|1|CW, 4V5C|1|AW, 4V5C|1|AY, 4V5C|1|CW, 4V5C|1|CY, 4V5D|1|AV, 4V5D|1|AW, 4V5D|1|AY, 4V5D|1|CV, 4V5D|1|CW, 4V5D|1|CY, 4V5E|1|AV, 4V5E|1|AW, 4V5E|1|CV, 4V5E|1|CW, 4V5G|1|AV, 4V5G|1|AW, 4V5G|1|CV, 4V5G|1|CW, 4V5J|1|AV, 4V5J|1|AW, 4V5J|1|CV, 4V5J|1|CW, 4V5L|1|AV, 4V5L|1|AW, 4V5P|1|AV, 4V5P|1|AW, 4V5P|1|CV, 4V5P|1|CW, 4V5Q|1|AV, 4V5Q|1|AW, 4V5Q|1|CV, 4V5Q|1|CW, 4V5R|1|AV, 4V5R|1|AW, 4V5R|1|CV, 4V5R|1|CW, 4V5S|1|AV, 4V5S|1|AW, 4V5S|1|CV, 4V5S|1|CW, 4V69|1|AW, 4V6F|1|BB, 4V6F|1|BC, 4V6F|1|BD, 4V6F|1|CB, 4V6F|1|CC, 4V6F|1|CD, 4V6K|1|BB, 4V6K|1|BE, 4V6L|1|AB, 4V6L|1|AE, 4V7C|1|AV, 4V7C|1|AW, 4V7D|1|BV, 4V7D|1|BW, 4V8J|1|AW, 4V8J|1|CW, 4V97|1|AW, 4V97|1|CW, 4V9C|1|AV, 4V9C|1|CV, 4V9D|1|AV, 4V9D|1|BV, 4V9H|1|AV, 4V9I|1|AW, 4V9I|1|CW, 4W2E|1|w, 4W2E|1|x, 4W2F|1|AW, 4W2F|1|AY, 4W2F|1|CW, 4W2F|1|CY, 4W2G|1|AW, 4W2G|1|AY, 4W2G|1|CW, 4W2G|1|CY, 4W2H|1|AY, 4W2H|1|CY, 4W2I|1|AW, 4W2I|1|AY, 4W2I|1|CW, 4W2I|1|CY, 4WOI|1|AX, 4WOI|1|DW, 4WPO|1|BW, 4WPO|1|BY, 4WPO|1|DW, 4WPO|1|DY, 4WQF|1|BW, 4WQF|1|BY, 4WQF|1|DW, 4WQF|1|DY, 4WQR|1|1K, 4WQR|1|1L, 4WQR|1|3K, 4WQR|1|3L, 4WQU|1|BW, 4WQU|1|BY, 4WQU|1|DW, 4WQU|1|DY, 4WRO|1|1K, 4WRO|1|1L, 4WRO|1|3K, 4WRO|1|3L, 4WSD|1|1K, 4WSD|1|1L, 4WSD|1|3K, 4WSD|1|3L, 4WT1|1|1K, 4WT1|1|1L, 4WT1|1|3K, 4WT1|1|3L, 4WZO|1|3K, 4WZO|1|3L, 4Y4P|1|1w, 4Y4P|1|1y, 4Y4P|1|2w, 4Y4P|1|2y, 4YCO|1|D, 4YCO|1|E, 4YCO|1|F, 4Z3S|1|1w, 4Z3S|1|1y, 4Z3S|1|2w, 4Z3S|1|2y, 5AFI|1|y, 5DOY|1|1w, 5DOY|1|1y, 5DOY|1|2w, 5DOY|1|2y, 5IQR|1|4, 5IQR|1|6, 5J4B|1|1w, 5J4B|1|1y, 5J4B|1|2w, 5J4B|1|2y, 5J4C|1|1w, 5J4C|1|1y, 5J4C|1|2w, 5J4C|1|2y, 5KPV|1|30, 5KPW|1|30, 5KPX|1|30, 5NDJ|1|V1, 5NDJ|1|V4, 5NDJ|1|W1, 5NDJ|1|W4, 5NDJ|1|X1, 5NDJ|1|X4, 5NDK|1|V1, 5NDK|1|V4, 5NDK|1|W1, 5NDK|1|W4, 5NDK|1|X1, 5NDK|1|X4, 5OT7|1|2, 5UQ7|1|z, 5UQ8|1|z, 5UYK|1|Y, 5UYL|1|Y, 5UYM|1|Y, 5W4K|1|1w, 5W4K|1|1y, 5W4K|1|2w, 5W4K|1|2y, 5WDT|1|y, 5WE4|1|y, 5WE6|1|y, 5WF0|1|y, 5WFK|1|y, 5WFS|1|y, 5WIS|1|1w, 5WIS|1|1y, 5WIS|1|2w, 5WIS|1|2y, 5WIT|1|1w, 5WIT|1|1y, 5WIT|1|2w, 5WIT|1|2y, 6AZ1|1|2, 6AZ1|1|4, 6BU8|1|Y, 6C5L|1|AV, 6C5L|1|AW, 6C5L|1|CV, 6C5L|1|CW, 6CFJ|1|1w, 6CFJ|1|1y, 6CFJ|1|2w, 6CFJ|1|2y, 6ND5|1|1w, 6ND5|1|1y, 6ND5|1|2w, 6ND5|1|2y, 6Q95|1|8(0) (1) 6O9J|1|v

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLength
15OT7|1|2Elongation factor G-ribosome complex captures in the absence of inhibitors.ELECTRON MICROSCOPY3.876
23L0U|1|AThe crystal structure of unmodified tRNAPhe from Escherichia coliX-RAY DIFFRACTION373
34WOI|1|AX4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2X-RAY DIFFRACTION376
44V9C|1|CVAllosteric control of the ribosome by small-molecule antibioticsX-RAY DIFFRACTION3.376
52ZXU|1|DCrystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe) and DMASPPX-RAY DIFFRACTION2.7569
62ZM5|1|DCrystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe)X-RAY DIFFRACTION2.5569
72ZXU|1|CCrystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe) and DMASPPX-RAY DIFFRACTION2.7574
82ZM5|1|CCrystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe)X-RAY DIFFRACTION2.5574
93FOZ|1|CStructure of E. coli Isopentenyl-tRNA transferase in complex with E. coli tRNA(Phe)X-RAY DIFFRACTION2.574
104W2H|1|AYCrystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P siteX-RAY DIFFRACTION2.718
115WIT|1|2yCrystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolutionX-RAY DIFFRACTION2.666
126CFJ|1|2yCrystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolutionX-RAY DIFFRACTION2.866
135J4B|1|2yCrystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolutionX-RAY DIFFRACTION2.666
145J4C|1|2yCrystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (soaked) and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolutionX-RAY DIFFRACTION2.866
154Y4P|1|2yCrystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolutionX-RAY DIFFRACTION2.566
164W2F|1|CYCrystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.466
174Z3S|1|2yCrystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolutionX-RAY DIFFRACTION2.6566
185DOY|1|2yCrystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolutionX-RAY DIFFRACTION2.666
194WPO|1|DYCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational stateX-RAY DIFFRACTION2.866
204WQU|1|DYCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycinX-RAY DIFFRACTION2.866
214WQF|1|DYCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational stateX-RAY DIFFRACTION2.866
221VY4|1|CYCrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.X-RAY DIFFRACTION2.666
231VY5|1|CYCrystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.X-RAY DIFFRACTION2.5566
244W2I|1|CYCrystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.766
254W2G|1|CYCrystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.5566
264W2G|1|AYCrystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.5567
274W2I|1|AYCrystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.767
281VY5|1|AYCrystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.X-RAY DIFFRACTION2.5567
291VY4|1|AYCrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.X-RAY DIFFRACTION2.667
304W2E|1|xCrystal structure of Elongation Factor 4 (EF4/LepA) bound to the Thermus thermophilus 70S ribosomeX-RAY DIFFRACTION2.967
314WQF|1|BYCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational stateX-RAY DIFFRACTION2.867
324WQU|1|BYCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycinX-RAY DIFFRACTION2.867
334WPO|1|BYCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational stateX-RAY DIFFRACTION2.867
344W2F|1|AYCrystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.467
355WIT|1|1yCrystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolutionX-RAY DIFFRACTION2.667
364Z3S|1|1yCrystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolutionX-RAY DIFFRACTION2.6567
375DOY|1|1yCrystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolutionX-RAY DIFFRACTION2.667
385W4K|1|2yCrystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolutionX-RAY DIFFRACTION2.767
395WIS|1|2yCrystal structure of the Thermus thermophilus 70S ribosome in complex with methymycin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolutionX-RAY DIFFRACTION2.766
406ND5|1|2yCrystal structure of the Thermus thermophilus 70S ribosome in complex with chloramphenicol and bound to mRNA and A-, P-, and E-site tRNAs at 2.60A resolutionX-RAY DIFFRACTION2.666
416ND5|1|1yCrystal structure of the Thermus thermophilus 70S ribosome in complex with chloramphenicol and bound to mRNA and A-, P-, and E-site tRNAs at 2.60A resolutionX-RAY DIFFRACTION2.667
425WIS|1|1yCrystal structure of the Thermus thermophilus 70S ribosome in complex with methymycin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolutionX-RAY DIFFRACTION2.767
435W4K|1|1yCrystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolutionX-RAY DIFFRACTION2.768
445J4C|1|1yCrystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (soaked) and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolutionX-RAY DIFFRACTION2.867
455J4B|1|1yCrystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolutionX-RAY DIFFRACTION2.667
464Y4P|1|1yCrystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolutionX-RAY DIFFRACTION2.567
476CFJ|1|1yCrystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolutionX-RAY DIFFRACTION2.867
486Q95|1|8Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosomeELECTRON MICROSCOPY3.776
494V51|1|CWStructure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycinX-RAY DIFFRACTION2.876
504V51|1|AWStructure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycinX-RAY DIFFRACTION2.876
514V5D|1|AWStructure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.X-RAY DIFFRACTION3.576
524V5D|1|CWStructure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.X-RAY DIFFRACTION3.576
534V5C|1|AWStructure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.X-RAY DIFFRACTION3.376
544V8J|1|AWCrystal structure of the bacterial ribosome ram mutation G347U.X-RAY DIFFRACTION3.976
554V97|1|AWCrystal structure of the bacterial ribosome ram mutation G299A.X-RAY DIFFRACTION3.5276
564P6F|1|QWCrystal structure of the peptolide 12C bound to bacterial ribosomeX-RAY DIFFRACTION3.676
574V5C|1|CWStructure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.X-RAY DIFFRACTION3.376
584V8J|1|CWCrystal structure of the bacterial ribosome ram mutation G347U.X-RAY DIFFRACTION3.976
594V97|1|CWCrystal structure of the bacterial ribosome ram mutation G299A.X-RAY DIFFRACTION3.5276
604P6F|1|XWCrystal structure of the peptolide 12C bound to bacterial ribosomeX-RAY DIFFRACTION3.676
615UQ7|1|z70S ribosome complex with dnaX mRNA stemloop and E-site tRNA ('in' conformation)ELECTRON MICROSCOPY3.576
624V5E|1|CWInsights into translational termination from the structure of RF2 bound to the ribosomeX-RAY DIFFRACTION3.4576
632JL7|1|WInsights into translational termination from the structure of RF2 bound to the ribosome (part 3 of 4). This file contains the 30S subunit.X-RAY DIFFRACTION3.4576
642JL5|1|WInsights into translational termination from the structure of RF2 bound to the ribosome (Part 1 of 4). This file contains the 30S subunit.X-RAY DIFFRACTION3.4576
654V5E|1|AWInsights into translational termination from the structure of RF2 bound to the ribosomeX-RAY DIFFRACTION3.4576
664V9I|1|AWCrystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codonX-RAY DIFFRACTION3.376
674V9I|1|CWCrystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codonX-RAY DIFFRACTION3.376
684V5J|1|CWStructure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide releaseX-RAY DIFFRACTION3.175
694V5J|1|AWStructure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide releaseX-RAY DIFFRACTION3.175
706C5L|1|AWConformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)X-RAY DIFFRACTION3.275
716C5L|1|CWConformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)X-RAY DIFFRACTION3.275
723JCE|1|9Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)ELECTRON MICROSCOPY3.276
734V5L|1|AWThe structure of EF-Tu and aminoacyl-tRNA bound to the 70S ribosome with a GTP analogX-RAY DIFFRACTION3.176
745IQR|1|4Structure of RelA bound to the 70S ribosomeELECTRON MICROSCOPY376
754V5Q|1|AWThe crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosomeX-RAY DIFFRACTION3.176
764V5S|1|AWThe crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome.X-RAY DIFFRACTION3.176
774V5P|1|AWThe crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosomeX-RAY DIFFRACTION3.176
784V5P|1|CWThe crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosomeX-RAY DIFFRACTION3.176
794V5R|1|CWThe crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome.X-RAY DIFFRACTION3.176
804V5R|1|AWThe crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome.X-RAY DIFFRACTION3.176
814V5G|1|CWThe crystal structure of the 70S ribosome bound to EF-Tu and tRNAX-RAY DIFFRACTION3.676
824V5G|1|AWThe crystal structure of the 70S ribosome bound to EF-Tu and tRNAX-RAY DIFFRACTION3.676
834V5S|1|CWThe crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome.X-RAY DIFFRACTION3.176
844V5Q|1|CWThe crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosomeX-RAY DIFFRACTION3.176
854V69|1|AWTernary complex-bound E.coli 70S ribosome.ELECTRON MICROSCOPY6.776
864WRO|1|3KComplex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-siteX-RAY DIFFRACTION3.0568
874WZO|1|3KComplex of 70S ribosome with tRNA-fMet and mRNAX-RAY DIFFRACTION3.370
884WQR|1|3KComplex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site.X-RAY DIFFRACTION3.1576
894WSD|1|3KComplex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.X-RAY DIFFRACTION2.9572
904WT1|1|3KComplex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-siteX-RAY DIFFRACTION3.0576
915NDJ|1|V1Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)X-RAY DIFFRACTION3.1576
925NDK|1|V1Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNAX-RAY DIFFRACTION2.9576
935NDK|1|V4Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNAX-RAY DIFFRACTION2.9576
945NDJ|1|V4Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)X-RAY DIFFRACTION3.1576
954V6F|1|CDElongation complex of the 70S ribosome with three tRNAs and mRNA.X-RAY DIFFRACTION3.175
964V6F|1|BDElongation complex of the 70S ribosome with three tRNAs and mRNA.X-RAY DIFFRACTION3.175
974WSD|1|3LComplex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.X-RAY DIFFRACTION2.9571
984WT1|1|3LComplex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-siteX-RAY DIFFRACTION3.0576
994WRO|1|3LComplex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-siteX-RAY DIFFRACTION3.0568
1004WZO|1|3LComplex of 70S ribosome with tRNA-fMet and mRNAX-RAY DIFFRACTION3.370
1014WQR|1|3LComplex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site.X-RAY DIFFRACTION3.1576
1024V4Y|1|ADCrystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex.X-RAY DIFFRACTION5.576
1035UYK|1|Y70S ribosome bound with cognate ternary complex not base-paired to A site codon (Structure I)ELECTRON MICROSCOPY3.976
1046AZ1|1|4Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycinELECTRON MICROSCOPY2.776
1053JCD|1|9Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)ELECTRON MICROSCOPY3.776
1064V9H|1|AVCrystal structure of the ribosome bound to elongation factor G in the guanosine triphosphatase stateX-RAY DIFFRACTION2.8674
1074V7C|1|AWStructure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA structure)ELECTRON MICROSCOPY7.676
1084V9D|1|AVStructures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-RAY DIFFRACTION376
1093R8N|1|VStructures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-RAY DIFFRACTION376
1104V7D|1|BWStructure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA*EF-G structure)ELECTRON MICROSCOPY7.676
1114V7C|1|AVStructure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA structure)ELECTRON MICROSCOPY7.676
1123JBV|1|VMechanisms of Ribosome Stalling by SecM at Multiple Elongation StepsELECTRON MICROSCOPY3.3276
1134V7D|1|BVStructure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA*EF-G structure)ELECTRON MICROSCOPY7.676
1144V5D|1|AYStructure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.X-RAY DIFFRACTION3.575
1154V5C|1|CYStructure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.X-RAY DIFFRACTION3.375
1164V5C|1|AYStructure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.X-RAY DIFFRACTION3.375
1174V5D|1|CYStructure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.X-RAY DIFFRACTION3.575
1186AZ1|1|2Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycinELECTRON MICROSCOPY2.775
1195DOY|1|1wCrystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolutionX-RAY DIFFRACTION2.668
1204Z3S|1|1wCrystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolutionX-RAY DIFFRACTION2.6567
1214Z3S|1|2wCrystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolutionX-RAY DIFFRACTION2.6566
1225DOY|1|2wCrystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolutionX-RAY DIFFRACTION2.667
1236BU8|1|Y70S ribosome with S1 domains 1 and 2 (Class 1)ELECTRON MICROSCOPY3.576
1246CFJ|1|2wCrystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolutionX-RAY DIFFRACTION2.865
1255W4K|1|2wCrystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolutionX-RAY DIFFRACTION2.765
1265J4C|1|2wCrystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (soaked) and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolutionX-RAY DIFFRACTION2.865
1275J4B|1|2wCrystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolutionX-RAY DIFFRACTION2.665
1285WIS|1|2wCrystal structure of the Thermus thermophilus 70S ribosome in complex with methymycin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolutionX-RAY DIFFRACTION2.765
1294Y4P|1|2wCrystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolutionX-RAY DIFFRACTION2.565
1306ND5|1|2wCrystal structure of the Thermus thermophilus 70S ribosome in complex with chloramphenicol and bound to mRNA and A-, P-, and E-site tRNAs at 2.60A resolutionX-RAY DIFFRACTION2.665
1314W2I|1|CWCrystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.765
1321VY5|1|CWCrystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.X-RAY DIFFRACTION2.5564
1334W2G|1|CWCrystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.5565
1344W2F|1|CWCrystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.465
1351VY4|1|CWCrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.X-RAY DIFFRACTION2.664
1364WPO|1|DWCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational stateX-RAY DIFFRACTION2.864
1375WIT|1|2wCrystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolutionX-RAY DIFFRACTION2.664
1385WIT|1|1wCrystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolutionX-RAY DIFFRACTION2.666
1394W2F|1|AWCrystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.467
1404W2G|1|AWCrystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.5567
1414WPO|1|BWCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational stateX-RAY DIFFRACTION2.866
1421VY4|1|AWCrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.X-RAY DIFFRACTION2.666
1431VY5|1|AWCrystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.X-RAY DIFFRACTION2.5566
1444W2I|1|AWCrystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sitesX-RAY DIFFRACTION2.767
1456ND5|1|1wCrystal structure of the Thermus thermophilus 70S ribosome in complex with chloramphenicol and bound to mRNA and A-, P-, and E-site tRNAs at 2.60A resolutionX-RAY DIFFRACTION2.667
1464Y4P|1|1wCrystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolutionX-RAY DIFFRACTION2.567
1475WIS|1|1wCrystal structure of the Thermus thermophilus 70S ribosome in complex with methymycin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolutionX-RAY DIFFRACTION2.767
1485J4B|1|1wCrystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolutionX-RAY DIFFRACTION2.667
1495J4C|1|1wCrystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (soaked) and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolutionX-RAY DIFFRACTION2.867
1505W4K|1|1wCrystal structure of the Thermus thermophilus 70S ribosome in complex with Klebsazolicin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolutionX-RAY DIFFRACTION2.767
1516CFJ|1|1wCrystal structure of the Thermus thermophilus 70S ribosome in complex with histidyl-CAM and bound to mRNA and A-, P-, and E-site tRNAs at 2.8A resolutionX-RAY DIFFRACTION2.867
1524WRO|1|1KComplex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-siteX-RAY DIFFRACTION3.0567
1534WSD|1|1KComplex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.X-RAY DIFFRACTION2.9570
1544WT1|1|1KComplex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-siteX-RAY DIFFRACTION3.0569
1554WQR|1|1KComplex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site.X-RAY DIFFRACTION3.1573
1564V6F|1|CBElongation complex of the 70S ribosome with three tRNAs and mRNA.X-RAY DIFFRACTION3.175
1574V6F|1|BBElongation complex of the 70S ribosome with three tRNAs and mRNA.X-RAY DIFFRACTION3.175
1583J46|1|aStructure of the SecY protein translocation channel in actionELECTRON MICROSCOPY10.175
1594WT1|1|1LComplex of 70S ribosome with tRNA-Phe and mRNA with A-A mismatch in the second position in the A-siteX-RAY DIFFRACTION3.0576
1604WSD|1|1LComplex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site and with antibiotic paromomycin.X-RAY DIFFRACTION2.9572
1614WRO|1|1LComplex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-siteX-RAY DIFFRACTION3.0568
1624WQR|1|1LComplex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the first position in the A-site.X-RAY DIFFRACTION3.1573
1635NDK|1|W4Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNAX-RAY DIFFRACTION2.9576
1645NDJ|1|W4Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)X-RAY DIFFRACTION3.1576
1655NDJ|1|W1Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)X-RAY DIFFRACTION3.1576
1665NDK|1|W1Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNAX-RAY DIFFRACTION2.9576
1673J73|1|S5Structure of the translating mammalian ribosome-Sec61 complexELECTRON MICROSCOPY3.974
1681VX2|1|5Structure of the translating mammalian ribosome-Sec61 complex. This entry contains the small ribosomal subunit.ELECTRON MICROSCOPY3.974
1694V4Y|1|ABCrystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex.X-RAY DIFFRACTION5.576
1704V4Y|1|ACCrystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex.X-RAY DIFFRACTION5.576
1714V5D|1|CVStructure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.X-RAY DIFFRACTION3.575
1724V5E|1|CVInsights into translational termination from the structure of RF2 bound to the ribosomeX-RAY DIFFRACTION3.4576
1732JL7|1|VInsights into translational termination from the structure of RF2 bound to the ribosome (part 3 of 4). This file contains the 30S subunit.X-RAY DIFFRACTION3.4576
1744V5E|1|AVInsights into translational termination from the structure of RF2 bound to the ribosomeX-RAY DIFFRACTION3.4576
1752JL5|1|VInsights into translational termination from the structure of RF2 bound to the ribosome (Part 1 of 4). This file contains the 30S subunit.X-RAY DIFFRACTION3.4576
1764V5J|1|CVStructure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide releaseX-RAY DIFFRACTION3.175
1776C5L|1|CVConformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)X-RAY DIFFRACTION3.276
1786C5L|1|AVConformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)X-RAY DIFFRACTION3.276
1794V5J|1|AVStructure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide releaseX-RAY DIFFRACTION3.175
1803JCD|1|8Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4)ELECTRON MICROSCOPY3.776
1814V5D|1|AVStructure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA.X-RAY DIFFRACTION3.575
1824V5G|1|CVThe crystal structure of the 70S ribosome bound to EF-Tu and tRNAX-RAY DIFFRACTION3.676
1834V5G|1|AVThe crystal structure of the 70S ribosome bound to EF-Tu and tRNAX-RAY DIFFRACTION3.676
1844V5L|1|AVThe structure of EF-Tu and aminoacyl-tRNA bound to the 70S ribosome with a GTP analogX-RAY DIFFRACTION3.176
1854V5S|1|CVThe crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome.X-RAY DIFFRACTION3.176
1864V5R|1|AVThe crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome.X-RAY DIFFRACTION3.176
1874V5R|1|CVThe crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome.X-RAY DIFFRACTION3.176
1884V5P|1|CVThe crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosomeX-RAY DIFFRACTION3.176
1894V5P|1|AVThe crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosomeX-RAY DIFFRACTION3.176
1904V5Q|1|AVThe crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosomeX-RAY DIFFRACTION3.176
1914V5S|1|AVThe crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome.X-RAY DIFFRACTION3.176
1924V5Q|1|CVThe crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosomeX-RAY DIFFRACTION3.176
1935NDK|1|X1Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNAX-RAY DIFFRACTION2.9576
1945NDJ|1|X1Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)X-RAY DIFFRACTION3.1576
1954V6F|1|CCElongation complex of the 70S ribosome with three tRNAs and mRNA.X-RAY DIFFRACTION3.175
1964V9C|1|AVAllosteric control of the ribosome by small-molecule antibioticsX-RAY DIFFRACTION3.376
1974WOI|1|DW4,5-linked aminoglycoside antibiotics regulate the bacterial ribosome by targeting dynamic conformational processes within intersubunit bridge B2X-RAY DIFFRACTION376
1983R8O|1|VStructures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-RAY DIFFRACTION376
1994V9D|1|BVStructures of the bacterial ribosome in classical and hybrid states of tRNA bindingX-RAY DIFFRACTION376
2004V6F|1|BCElongation complex of the 70S ribosome with three tRNAs and mRNA.X-RAY DIFFRACTION3.175
2015NDK|1|X4Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNAX-RAY DIFFRACTION2.9576
2025NDJ|1|X4Crystal structure of aminoglycoside TC007 in complex with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA (soaking)X-RAY DIFFRACTION3.1576
2034WQF|1|DWCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational stateX-RAY DIFFRACTION2.869
2044WQF|1|BWCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational stateX-RAY DIFFRACTION2.869
2054WQU|1|BWCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycinX-RAY DIFFRACTION2.869
2064W2E|1|wCrystal structure of Elongation Factor 4 (EF4/LepA) bound to the Thermus thermophilus 70S ribosomeX-RAY DIFFRACTION2.968
2074WQU|1|DWCrystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycinX-RAY DIFFRACTION2.869
2084V4I|1|zCrystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements.X-RAY DIFFRACTION3.7167
2093JCE|1|6Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4)ELECTRON MICROSCOPY3.275
2104YCO|1|FE. coli dihydrouridine synthase C (DusC) in complex with tRNAPheX-RAY DIFFRACTION2.171
2114YCO|1|DE. coli dihydrouridine synthase C (DusC) in complex with tRNAPheX-RAY DIFFRACTION2.174
2124YCO|1|EE. coli dihydrouridine synthase C (DusC) in complex with tRNAPheX-RAY DIFFRACTION2.167
2134V6K|1|BEStructural insights into cognate vs. near-cognate discrimination during decoding.ELECTRON MICROSCOPY8.2566
2144V6L|1|AEStructural insights into cognate vs. near-cognate discrimination during decoding.ELECTRON MICROSCOPY13.266
2155KPV|1|30Structure of RelA bound to ribosome in presence of A/R tRNA (Structure II)ELECTRON MICROSCOPY4.176
2165KPW|1|30Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III)ELECTRON MICROSCOPY3.976
2175KPX|1|30Structure of RelA bound to ribosome in presence of A/R tRNA (Structure IV)ELECTRON MICROSCOPY3.976
2185IQR|1|6Structure of RelA bound to the 70S ribosomeELECTRON MICROSCOPY367
2195UYL|1|Y70S ribosome bound with cognate ternary complex base-paired to A site codon (Structure II)ELECTRON MICROSCOPY3.676
2205WFK|1|y70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C3)ELECTRON MICROSCOPY3.467
2215WF0|1|y70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C2)ELECTRON MICROSCOPY3.667
2225WDT|1|y70S ribosome-EF-Tu H84A complex with GppNHpELECTRON MICROSCOPY367
2235WE4|1|y70S ribosome-EF-Tu wt complex with GppNHpELECTRON MICROSCOPY3.167
2245WFS|1|y70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C4)ELECTRON MICROSCOPY367
2255WE6|1|y70S ribosome-EF-Tu H84A complex with GTP and cognate tRNAELECTRON MICROSCOPY3.467
2265AFI|1|y2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EMELECTRON MICROSCOPY2.967
2275UYM|1|Y70S ribosome bound with cognate ternary complex base-paired to A site codon, closed 30S (Structure III)ELECTRON MICROSCOPY3.276
2284V6K|1|BBStructural insights into cognate vs. near-cognate discrimination during decoding.ELECTRON MICROSCOPY8.2566
2294V6L|1|ABStructural insights into cognate vs. near-cognate discrimination during decoding.ELECTRON MICROSCOPY13.266
2305UQ8|1|z70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)ELECTRON MICROSCOPY3.276
2311VY7|1|AYCrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.X-RAY DIFFRACTION2.85
2321VY7|1|CYCrystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.X-RAY DIFFRACTION2.85
2334W2H|1|CYCrystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P siteX-RAY DIFFRACTION2.75
2343FOZ|1|DStructure of E. coli Isopentenyl-tRNA transferase in complex with E. coli tRNA(Phe)X-RAY DIFFRACTION2.569

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


Coloring options:

Copyright 2024 BGSU RNA group. Page generated in 18.7497 s