NR_20.0_20721.10

Members (42)
History
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#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	Date
1	5E81\|1\|2K (rep)	Transfer RNA	mRNA, tRNA-fMet	Thermus thermophilus	Bacteria	RF00005	Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair	X-ray diffraction	2.95	2016-01-27
2	5J8B\|1\|x	Transfer RNA	mRNA, P-site tRNA	Thermus thermophilus	Bacteria	RF00005	Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome	X-ray diffraction	2.6	2016-05-25
3	4V95\|1\|AV	Transfer RNA	mRNA, P-site fMet-tRNA	Thermus thermophilus	Bacteria	RF00005	Crystal structure of YAEJ bound to the 70S ribosome	X-ray diffraction	3.2	2014-07-09
4	4V7J\|1\|Av	Transfer RNA	RNA (5'-R(GPGPCPAPAPGPGPAPGPGPUPAAPAPAPAPUPGP(OMU)P(A2M)P(OMG)PAPAPAP*A)-3'), RNA (77-MER)	Thermus thermophilus	Bacteria	RF00005	Structure of RelE nuclease bound to the 70S ribosome (precleavage state)	X-ray diffraction	3.3	2014-07-09
5	4V9B\|1\|AC	Transfer RNA	MRNA, TRNA-FMET	Thermus thermophilus	Bacteria	RF00005	Crystal Structure of the 70S ribosome with tigecycline.	X-ray diffraction	3.1	2014-07-09
6	4V7J\|1\|Bv	Transfer RNA	RNA (5'-R(GPGPCPAPAPGPGPAPGPGPUPAAPAPAPAPUPGP(OMU)P(A2M)P(OMG)PAPAPAP*A)-3'), RNA (77-MER)	Thermus thermophilus	Bacteria	RF00005	Structure of RelE nuclease bound to the 70S ribosome (precleavage state)	X-ray diffraction	3.3	2014-07-09
7	5E81\|1\|2L	Transfer RNA	mRNA, tRNA-fMet	Thermus thermophilus	Bacteria	RF00005	Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair	X-ray diffraction	2.95	2016-01-27
8	4V9B\|1\|CC	Transfer RNA	MRNA, TRNA-FMET	Thermus thermophilus	Bacteria	RF00005	Crystal Structure of the 70S ribosome with tigecycline.	X-ray diffraction	3.1	2014-07-09
9	4V95\|1\|CV	Transfer RNA	mRNA, P-site fMet-tRNA	Thermus thermophilus	Bacteria	RF00005	Crystal structure of YAEJ bound to the 70S ribosome	X-ray diffraction	3.2	2014-07-09
10	4V7K\|1\|Bv	Transfer RNA	RNA (5'-R(AAPGPUPAPAPAPAPAPUPGPUPA(CCC))-3'), RNA (77-MER)	Thermus thermophilus	Bacteria	RF00005	Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)	X-ray diffraction	3.6	2014-07-09
11	4V7K\|1\|Av	Transfer RNA	RNA (5'-R(AAPGPUPAPAPAPAPAPUPGPUPA(CCC))-3'), RNA (77-MER)	Thermus thermophilus	Bacteria	RF00005	Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)	X-ray diffraction	3.6	2014-07-09
12	4WT8\|1\|C4	Transfer RNA	mRNA, P site trNA	Thermus thermophilus	Bacteria	RF00005	Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex	X-ray diffraction	3.4	2015-01-21
13	4V9A\|1\|AC	Transfer RNA	MRNA, TRNA-FMET	Thermus thermophilus	Bacteria	RF00005	Crystal Structure of the 70S ribosome with tetracycline.	X-ray diffraction	3.3	2014-07-09
14	4L47\|1\|XV	Transfer RNA	A-site ASL SufA6, messenger RNA, P-site tRNA fMet	Thermus thermophilus	Bacteria	RF00005	Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U on the Ribosome	X-ray diffraction	3.22	2014-08-06
15	4V7K\|1\|Bw	Transfer RNA	RNA (77-MER)	Thermus thermophilus	Bacteria	RF00005	Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)	X-ray diffraction	3.6	2014-07-09
16	4L47\|1\|QV	Transfer RNA	A-site ASL SufA6, messenger RNA, P-site tRNA fMet	Thermus thermophilus	Bacteria	RF00005	Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U on the Ribosome	X-ray diffraction	3.22	2014-08-06
17	4V7K\|1\|Aw	Transfer RNA	RNA (77-MER)	Thermus thermophilus	Bacteria	RF00005	Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)	X-ray diffraction	3.6	2014-07-09
18	4V9A\|1\|CC	Transfer RNA	MRNA, TRNA-FMET	Thermus thermophilus	Bacteria	RF00005	Crystal Structure of the 70S ribosome with tetracycline.	X-ray diffraction	3.3	2014-07-09
19	4V7J\|1\|Aw	Transfer RNA	RNA (77-MER)	Thermus thermophilus	Bacteria	RF00005	Structure of RelE nuclease bound to the 70S ribosome (precleavage state)	X-ray diffraction	3.3	2014-07-09
20	4V7J\|1\|Bw	Transfer RNA	RNA (77-MER)	Thermus thermophilus	Bacteria	RF00005	Structure of RelE nuclease bound to the 70S ribosome (precleavage state)	X-ray diffraction	3.3	2014-07-09
21	4V9B\|1\|CD	Transfer RNA	TRNA-FMET	Thermus thermophilus	Bacteria	RF00005	Crystal Structure of the 70S ribosome with tigecycline.	X-ray diffraction	3.1	2014-07-09
22	4V4J\|1\|z	Transfer RNA	MRNA, P-site tRNAfMET	Thermus thermophilus	Bacteria	RF00005	Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.	X-ray diffraction	3.83	2014-07-09
23	4V9B\|1\|AD	Transfer RNA	TRNA-FMET	Thermus thermophilus	Bacteria	RF00005	Crystal Structure of the 70S ribosome with tigecycline.	X-ray diffraction	3.1	2014-07-09
24	4V8X\|1\|AV	Transfer RNA	5'-R(GPGPCPAPAPGPGPAPGPGPUPAPAPAP APAPUPG U2M A2M A2MPAPAPAPA)-3', transfer RNA	Thermus thermophilus	Bacteria	RF00005	Structure of Thermus thermophilus ribosome	X-ray diffraction	3.35	2014-07-09
25	4V9N\|1\|CW	Transfer RNA	messenger RNA (5'-R(APAPUPGPUPAP*G)-3'), P-site tRNA-fMet	Thermus thermophilus	Bacteria	RF00005	Crystal structure of the 70S ribosome bound with the Q253P mutant of release factor RF2.	X-ray diffraction	3.4	2014-07-09
26	4V8X\|1\|CV	Transfer RNA	BACTERIAL TOXIN YOEB, transfer RNA	Thermus thermophilus	Bacteria	RF00005	Structure of Thermus thermophilus ribosome	X-ray diffraction	3.35	2014-07-09
27	4V9N\|1\|AW	Transfer RNA	messenger RNA (5'-R(APAPUPGPUPAP*G)-3'), P-site tRNA-fMet	Thermus thermophilus	Bacteria	RF00005	Crystal structure of the 70S ribosome bound with the Q253P mutant of release factor RF2.	X-ray diffraction	3.4	2014-07-09
28	4V8U\|1\|CW	Transfer RNA	RNA	Thermus thermophilus	Bacteria	RF00005	Crystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex.	X-ray diffraction	3.7	2014-07-09
29	4V8U\|1\|AW	Transfer RNA	RNA	Thermus thermophilus	Bacteria	RF00005	Crystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex.	X-ray diffraction	3.7	2014-07-09
30	4V8X\|1\|CW	Transfer RNA	transfer RNA	Thermus thermophilus	Bacteria	RF00005	Structure of Thermus thermophilus ribosome	X-ray diffraction	3.35	2014-07-09
31	4V8X\|1\|AW	Transfer RNA	transfer RNA	Thermus thermophilus	Bacteria	RF00005	Structure of Thermus thermophilus ribosome	X-ray diffraction	3.35	2014-07-09
32	6BOK\|1\|IA	Small subunit ribosomal RNA fragment	16S ribosomal RNA, mRNA	Thermus thermophilus	Bacteria	RF00005	E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome	X-ray diffraction	3.55	2018-05-23
33	6BOK\|1\|LC	Small subunit ribosomal RNA fragment	16S ribosomal RNA, mRNA	Thermus thermophilus	Bacteria	RF00005	E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome	X-ray diffraction	3.55	2018-05-23
34	6BOK\|1\|D	Small subunit ribosomal RNA fragment	16S ribosomal RNA	Thermus thermophilus	Bacteria	RF00005	E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome	X-ray diffraction	3.55	2018-05-23
35	6BOK\|1\|GB	Small subunit ribosomal RNA fragment	16S ribosomal RNA	Thermus thermophilus	Bacteria	RF00005	E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome	X-ray diffraction	3.55	2018-05-23
36	3J9Z\|1\|S6	Transfer RNA	P-tRNA	Thermus thermophilus	Bacteria	RF00005	Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G	Electron microscopy	3.6	2015-07-01
37	3JA1\|1\|S2	Transfer RNA	mRNA, P/E-tRNA	Thermus thermophilus	Bacteria	RF00005	Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G	Electron microscopy	3.6	2015-07-01
38	5LMT\|1\|Z	Transfer RNA	mRNA, tRNAi	Thermus thermophilus	Bacteria	RF00005	Structure of bacterial 30S-IF1-IF3-mRNA-tRNA translation pre-initiation complex(state-3)	Electron microscopy	4.15	2016-10-05
39	5LMR\|1\|Z	Transfer RNA	mRNA, tRNAi	Thermus thermophilus	Bacteria	RF00005	Structure of bacterial 30S-IF1-IF3-mRNA-tRNA translation pre-initiation complex(state-2B)	Electron microscopy	4.45	2016-10-05
40	4V68\|1\|AV	Transfer RNA	P-SITE TRNA, SYNTHETIC MRNA	Thermus thermophilus	Bacteria	RF00005	T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.	Electron microscopy	6.4	2014-07-09
41	4V5N\|1\|AV	Transfer RNA	MRNA, TRNA	Thermus thermophilus	Bacteria	RF00005	tRNA translocation on the 70S ribosome: the post- translocational translocation intermediate TI(POST)	Electron microscopy	7.6	2014-07-09
42	4V5M\|1\|AV	Transfer RNA	MRNA, TRNA	Thermus thermophilus	Bacteria	RF00005	tRNA tranlocation on the 70S ribosome: the pre-translocational translocation intermediate TI(PRE)	Electron microscopy	7.8	2014-07-09

Release history

Release	3.333	3.334	3.335	3.336	3.337	3.338	3.339	3.340	3.341	3.342	3.343	3.344	3.345	3.346	3.347	3.348	3.349	3.350	3.351	3.352	3.353	3.354	3.355	3.356	3.357	3.358	3.359	3.360	3.361	3.362	3.363	3.364
Date	2024-05-01	2024-05-08	2024-05-15	2024-05-22	2024-05-29	2024-06-05	2024-06-12	2024-06-19	2024-06-26	2024-07-03	2024-07-10	2024-07-17	2024-07-25	2024-07-31	2024-08-07	2024-08-14	2024-08-21	2024-08-28	2024-09-04	2024-09-11	2024-09-18	2024-09-25	2024-10-02	2024-10-09	2024-10-16	2024-10-23	2024-10-30	2024-11-06	2024-11-13	2024-11-20	2024-11-27	2024-12-04

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#S	PDB	Title	Method	Resolution	Length
1	3J9Z\|1\|S6	Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G	ELECTRON MICROSCOPY	3.6	77
2	5J8B\|1\|x	Crystal structure of Elongation Factor 4 (EF-4/LepA) in complex with GDPCP bound to the Thermus thermophilus 70S ribosome	X-RAY DIFFRACTION	2.6	73
3	6BOK\|1\|LC	E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome	X-RAY DIFFRACTION	3.55	73
4	6BOK\|1\|IA	E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome	X-RAY DIFFRACTION	3.55	73
5	5E81\|1\|2K	Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair	X-RAY DIFFRACTION	2.95	72
6	4V9A\|1\|AC	Crystal Structure of the 70S ribosome with tetracycline.	X-RAY DIFFRACTION	3.3	77
7	4V9B\|1\|AC	Crystal Structure of the 70S ribosome with tigecycline.	X-RAY DIFFRACTION	3.1	77
8	4V9B\|1\|CC	Crystal Structure of the 70S ribosome with tigecycline.	X-RAY DIFFRACTION	3.1	77
9	4V9A\|1\|CC	Crystal Structure of the 70S ribosome with tetracycline.	X-RAY DIFFRACTION	3.3	77
10	4WT8\|1\|C4	Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex	X-RAY DIFFRACTION	3.4	77
11	4V95\|1\|CV	Crystal structure of YAEJ bound to the 70S ribosome	X-RAY DIFFRACTION	3.2	77
12	4V7J\|1\|Av	Structure of RelE nuclease bound to the 70S ribosome (precleavage state)	X-RAY DIFFRACTION	3.3	76
13	4V7K\|1\|Av	Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)	X-RAY DIFFRACTION	3.6	76
14	4V7K\|1\|Bv	Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)	X-RAY DIFFRACTION	3.6	76
15	4V7J\|1\|Bv	Structure of RelE nuclease bound to the 70S ribosome (precleavage state)	X-RAY DIFFRACTION	3.3	76
16	4V9N\|1\|AW	Crystal structure of the 70S ribosome bound with the Q253P mutant of release factor RF2.	X-RAY DIFFRACTION	3.4	77
17	4V9N\|1\|CW	Crystal structure of the 70S ribosome bound with the Q253P mutant of release factor RF2.	X-RAY DIFFRACTION	3.4	77
18	4V95\|1\|AV	Crystal structure of YAEJ bound to the 70S ribosome	X-RAY DIFFRACTION	3.2	77
19	4L47\|1\|XV	Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U on the Ribosome	X-RAY DIFFRACTION	3.22	77
20	4L47\|1\|QV	Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U on the Ribosome	X-RAY DIFFRACTION	3.22	77
21	4V68\|1\|AV	T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.	ELECTRON MICROSCOPY	6.4	76
22	4V4J\|1\|z	Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.	X-RAY DIFFRACTION	3.83	77
23	4V8X\|1\|CV	Structure of Thermus thermophilus ribosome	X-RAY DIFFRACTION	3.35	77
24	4V8X\|1\|AV	Structure of Thermus thermophilus ribosome	X-RAY DIFFRACTION	3.35	76
25	5E81\|1\|2L	Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair	X-RAY DIFFRACTION	2.95	72
26	5LMR\|1\|Z	Structure of bacterial 30S-IF1-IF3-mRNA-tRNA translation pre-initiation complex(state-2B)	ELECTRON MICROSCOPY	4.45	72
27	5LMT\|1\|Z	Structure of bacterial 30S-IF1-IF3-mRNA-tRNA translation pre-initiation complex(state-3)	ELECTRON MICROSCOPY	4.15	72
28	4V8U\|1\|AW	Crystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex.	X-RAY DIFFRACTION	3.7	76
29	4V8U\|1\|CW	Crystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex.	X-RAY DIFFRACTION	3.7	76
30	6BOK\|1\|D	E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome	X-RAY DIFFRACTION	3.55	73
31	6BOK\|1\|GB	E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome	X-RAY DIFFRACTION	3.55	73
32	4V7K\|1\|Bw	Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)	X-RAY DIFFRACTION	3.6	77
33	4V7J\|1\|Bw	Structure of RelE nuclease bound to the 70S ribosome (precleavage state)	X-RAY DIFFRACTION	3.3	77
34	4V8X\|1\|CW	Structure of Thermus thermophilus ribosome	X-RAY DIFFRACTION	3.35	77
35	4V7J\|1\|Aw	Structure of RelE nuclease bound to the 70S ribosome (precleavage state)	X-RAY DIFFRACTION	3.3	77
36	4V8X\|1\|AW	Structure of Thermus thermophilus ribosome	X-RAY DIFFRACTION	3.35	77
37	4V7K\|1\|Aw	Structure of RelE nuclease bound to the 70S ribosome (postcleavage state)	X-RAY DIFFRACTION	3.6	77
38	4V9B\|1\|CD	Crystal Structure of the 70S ribosome with tigecycline.	X-RAY DIFFRACTION	3.1	77
39	4V9B\|1\|AD	Crystal Structure of the 70S ribosome with tigecycline.	X-RAY DIFFRACTION	3.1	77
40	4V5N\|1\|AV	tRNA translocation on the 70S ribosome: the post- translocational translocation intermediate TI(POST)	ELECTRON MICROSCOPY	7.6	77
41	4V5M\|1\|AV	tRNA tranlocation on the 70S ribosome: the pre-translocational translocation intermediate TI(PRE)	ELECTRON MICROSCOPY	7.8	77
42	3JA1\|1\|S2	Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G	ELECTRON MICROSCOPY	3.6	77

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.

Coloring options: Nucleotide numbers

Equivalence class NR_20.0_20721.10 Current

Release history

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