#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
17MDZ|1|2 (rep)Transfer RNAmRNA, P-site tRNAOryctolagus cuniculusEukaryaRF0000580S rabbit ribosome stalled with benzamide-CHXElectron microscopy3.22021-09-01
26HCJ|1|q3Transfer RNAA/P RNA, mRNAOryctolagus cuniculusEukaryaRF00005Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAsElectron microscopy3.82018-10-17
36HCQ|1|q3Transfer RNAA/P tRNA, mRNAOryctolagus cuniculusEukaryaRF00005Structure of the rabbit collided di-ribosome (collided monosome)Electron microscopy6.52018-10-17
44UJE|1|AVTransfer RNAMessenger RNA, TRNA-LYSOryctolagus cuniculusEukaryaRF00005Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangementElectron microscopy6.92014-07-16
53J0O|1|VTransfer RNAmRNA fragment, tRNAOryctolagus cuniculusEukaryaRF00005Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 9A cryo-EM map: classic PRE state 2Electron microscopy92011-11-16
63J0O|1|WTransfer RNAtRNAOryctolagus cuniculusEukaryaRF00005Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 9A cryo-EM map: classic PRE state 2Electron microscopy92011-11-16
73J0O|1|YTransfer RNAmRNA fragment, tRNAOryctolagus cuniculusEukaryaRF00005Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 9A cryo-EM map: classic PRE state 2Electron microscopy92011-11-16
84UJD|1|BATransfer RNATRNAOryctolagus cuniculusEukaryaRF00005mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like stateElectron microscopy8.92014-07-30
93J0L|1|VTransfer RNAmRNA fragment, tRNAOryctolagus cuniculusEukaryaRF00005Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 9.8A cryo-EM map: classic PRE state 1Electron microscopy9.82011-11-16
103J0L|1|WTransfer RNAtRNAOryctolagus cuniculusEukaryaRF00005Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 9.8A cryo-EM map: classic PRE state 1Electron microscopy9.82011-11-16
113J0L|1|YTransfer RNAmRNA fragment, tRNAOryctolagus cuniculusEukaryaRF00005Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 9.8A cryo-EM map: classic PRE state 1Electron microscopy9.82011-11-16
124UJC|1|AATransfer RNATRNAOryctolagus cuniculusEukaryaRF00005mammalian 80S HCV-IRES initiation complex with eIF5B POST-like stateElectron microscopy9.52014-07-30
133J0P|1|YTransfer RNAmRNA fragment, tRNAOryctolagus cuniculusEukaryaRF00005Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 10.6A cryo-em map: rotated PRE state 1Electron microscopy10.62011-11-16

Release history

Release3.1943.1953.1963.1973.1983.1993.2003.2013.2023.2033.2043.2053.2063.2073.2083.2093.2103.2113.2123.2133.2143.2153.2163.2173.2183.2193.2203.2213.2223.2233.2243.2253.2263.2273.2283.2293.2303.2313.2323.2333.2343.2353.2363.2373.2383.2393.2403.2413.2423.2433.2443.2453.2463.2473.2483.2493.2503.2513.2523.2533.2543.2553.2563.2573.2583.2593.2603.2613.2623.2633.2643.2653.2663.2673.2683.2693.2703.2713.2723.2733.2743.2753.2763.2773.2783.2793.2803.2813.2823.2833.2843.2853.2863.2873.2883.2893.2903.2913.2923.2933.2943.2953.2963.2973.2983.2993.3003.3013.3023.3033.3043.3053.3063.3073.3083.3093.3103.3113.3123.3133.3143.3153.3163.3173.3183.3193.3203.3213.3223.3233.3243.3253.3263.3273.3283.3293.3303.3313.3323.3333.3343.3353.3363.3373.3383.3393.3403.3413.3423.3433.3443.3453.3463.3473.3483.3493.3503.3513.3523.3533.3543.3553.3563.3573.3583.3593.360
Date2021-09-012021-09-082021-09-152021-09-222021-09-292021-10-062021-10-132021-10-202021-10-272021-11-032021-11-102021-11-172021-11-242021-12-012021-12-082021-12-152021-12-222021-12-292022-01-052022-01-122022-01-192022-01-262022-02-022022-02-092022-02-162022-02-232022-03-022022-03-092022-03-162022-03-232022-03-302022-04-062022-04-132022-04-202022-04-272022-05-042022-05-112022-05-182022-05-252022-06-012022-06-082022-06-152022-06-222022-06-292022-07-062022-07-132022-07-202022-07-272022-08-032022-08-102022-08-172022-08-242022-08-312022-09-072022-09-142022-09-212022-09-282022-10-052022-10-122022-10-192022-10-262022-11-022022-11-092022-11-162022-11-232022-11-302022-12-072022-12-142022-12-212022-12-282023-01-042023-01-112023-01-182023-01-252023-02-012023-02-082023-02-152023-02-222023-03-012023-03-082023-03-152023-03-222023-03-292023-04-052023-04-122023-04-192023-04-262023-05-032023-05-102023-05-172023-05-242023-05-312023-06-072023-06-142023-06-212023-06-282023-07-052023-07-122023-07-192023-07-262023-08-022023-08-092023-08-162023-08-232023-08-302023-09-062023-09-132023-09-202023-09-272023-10-042023-10-112023-10-182023-10-252023-11-012023-11-082023-11-152023-11-242023-11-292023-12-062023-12-132023-12-202023-12-272024-01-032024-01-102024-01-172024-01-242024-01-312024-02-072024-02-142024-02-212024-02-282024-03-062024-03-132024-03-202024-03-272024-04-032024-04-102024-04-172024-04-242024-05-012024-05-082024-05-152024-05-222024-05-292024-06-052024-06-122024-06-192024-06-262024-07-032024-07-102024-07-172024-07-252024-07-312024-08-072024-08-142024-08-212024-08-282024-09-042024-09-112024-09-182024-09-252024-10-022024-10-092024-10-162024-10-232024-10-302024-11-06

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_20.0_22323.3NR_20.0_22323.23.194(12) 3J0L|1|V, 3J0L|1|W, 3J0L|1|Y, 3J0O|1|V, 3J0O|1|W, 3J0O|1|Y, 3J0P|1|Y, 4UJC|1|AA, 4UJD|1|BA, 4UJE|1|AV, 6HCJ|1|q3, 6HCQ|1|q3(1) 7MDZ|1|2(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLength
17MDZ|1|280S rabbit ribosome stalled with benzamide-CHXELECTRON MICROSCOPY3.276
24UJE|1|AVRegulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangementELECTRON MICROSCOPY6.976
33J0L|1|VCore of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 9.8A cryo-EM map: classic PRE state 1ELECTRON MICROSCOPY9.875
43J0O|1|VCore of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 9A cryo-EM map: classic PRE state 2ELECTRON MICROSCOPY975
54UJC|1|AAmammalian 80S HCV-IRES initiation complex with eIF5B POST-like stateELECTRON MICROSCOPY9.576
64UJD|1|BAmammalian 80S HCV-IRES initiation complex with eIF5B PRE-like stateELECTRON MICROSCOPY8.976
73J0L|1|WCore of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 9.8A cryo-EM map: classic PRE state 1ELECTRON MICROSCOPY9.876
83J0O|1|WCore of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 9A cryo-EM map: classic PRE state 2ELECTRON MICROSCOPY976
93J0O|1|YCore of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 9A cryo-EM map: classic PRE state 2ELECTRON MICROSCOPY975
103J0P|1|YCore of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 10.6A cryo-em map: rotated PRE state 1ELECTRON MICROSCOPY10.675
113J0L|1|YCore of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 9.8A cryo-EM map: classic PRE state 1ELECTRON MICROSCOPY9.875
126HCJ|1|q3Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAsELECTRON MICROSCOPY3.874
136HCQ|1|q3Structure of the rabbit collided di-ribosome (collided monosome)ELECTRON MICROSCOPY6.574

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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