#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
11IL2|1|C (rep)Transfer RNAASPARTYL TRANSFER RNASaccharomyces cerevisiaeEukaryaRF00005Crystal Structure of the E. coli Aspartyl-tRNA Synthetase:Yeast tRNAasp:aspartyl-Adenylate ComplexX-ray diffraction2.62001-09-28
21IL2|1|DTransfer RNAASPARTYL TRANSFER RNASaccharomyces cerevisiaeEukaryaRF00005Crystal Structure of the E. coli Aspartyl-tRNA Synthetase:Yeast tRNAasp:aspartyl-Adenylate ComplexX-ray diffraction2.62001-09-28
32TRA|1|ATransfer RNATRNAASPSaccharomyces cerevisiaeEukaryaRF00005RESTRAINED REFINEMENT OF TWO CRYSTALLINE FORMS OF YEAST ASPARTIC ACID AND PHENYLALANINE TRANSFER RNA CRYSTALSX-ray diffraction31987-11-06
43TRA|1|ATransfer RNATRNAASPSaccharomyces cerevisiaeEukaryaRF00005RESTRAINED REFINEMENT OF TWO CRYSTALLINE FORMS OF YEAST ASPARTIC ACID AND PHENYLALANINE TRANSFER RNA CRYSTALSX-ray diffraction31987-11-06
51ASZ|1|ST-RNA (75-MER)THE ACTIVE SITE OF YEAST ASPARTYL-TRNA SYNTHETASE: STRUCTURAL AND FUNCTIONAL ASPECTS OF THE AMINOACYLATION REACTIONX-ray diffraction31995-05-08
61ASY|1|ST-RNA (75-MER)CLASS II AMINOACYL TRANSFER RNA SYNTHETASES: CRYSTAL STRUCTURE OF YEAST ASPARTYL-TRNA SYNTHETASE COMPLEXED WITH TRNA ASPX-ray diffraction2.91995-05-08
71ASZ|1|RT-RNA (75-MER)THE ACTIVE SITE OF YEAST ASPARTYL-TRNA SYNTHETASE: STRUCTURAL AND FUNCTIONAL ASPECTS OF THE AMINOACYLATION REACTIONX-ray diffraction31995-05-08
81ASY|1|RT-RNA (75-MER)CLASS II AMINOACYL TRANSFER RNA SYNTHETASES: CRYSTAL STRUCTURE OF YEAST ASPARTYL-TRNA SYNTHETASE COMPLEXED WITH TRNA ASPX-ray diffraction2.91995-05-08
91VTQ|1|AT-RNA-ASPsynthetic constructTHREE-DIMENSIONAL STRUCTURE OF YEAST T-RNA-ASP. I. STRUCTURE DETERMINATIONX-ray diffraction32011-07-13
103IZ7|1|BmRNA (AAAA-GAC-UUCA), P-site tRNA-AspModel of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosomeElectron microscopy5.52010-12-01
113J16|1|LTransfer RNAP-site tRNASaccharomyces cerevisiaeEukaryaRF00005Models of ribosome-bound Dom34p and Rli1p and their ribosomal binding partnersElectron microscopy7.22012-02-22
124V6I|1|CBTransfer RNAMRNA, RNA (5'-R(P*AP*AP*AP*AP*GP*AP*CP*UP*UP*CP*A)-3'), P-SITE TRNA ASPSaccharomyces cerevisiaeEukaryaRF00005Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosomeElectron microscopy8.82014-07-09

Release history

Release3.03.13.23.33.43.53.63.73.83.93.103.113.123.133.143.153.163.173.183.193.203.213.223.233.243.253.263.273.283.293.303.313.323.333.343.353.363.373.383.393.403.413.423.433.443.453.463.473.483.493.503.513.523.533.543.553.563.573.583.593.603.613.623.633.643.653.663.673.683.693.703.713.723.733.743.753.763.773.783.793.803.813.823.833.843.853.863.873.883.893.903.913.923.933.943.953.963.973.98
Date2017-12-152017-12-222017-12-292018-01-052018-01-122018-01-192018-01-262018-02-022018-02-092018-02-162018-02-232018-03-012018-03-082018-03-152018-03-222018-03-292018-04-062018-04-132018-04-202018-04-272018-05-042018-05-112018-05-182018-05-252018-06-012018-06-082018-06-152018-06-222018-06-292018-07-062018-07-132018-07-202018-07-272018-08-032018-08-102018-08-172018-08-242018-08-312018-09-072018-09-142018-09-212018-09-282018-10-052018-10-122018-10-192018-10-262018-11-022018-11-092018-11-162018-11-232018-11-302018-12-072018-12-142018-12-212018-12-282019-01-042019-01-112019-01-182019-01-252019-02-012019-02-082019-02-152019-02-222019-03-012019-03-082019-03-152019-03-222019-03-292019-04-052019-04-122019-04-192019-04-262019-05-032019-05-102019-05-172019-05-242019-05-312019-06-072019-06-142019-06-212019-06-282019-07-052019-07-122019-07-192019-07-262019-08-022019-08-092019-08-162019-08-232019-08-282019-09-042019-09-112019-09-192019-09-252019-10-032019-10-092019-10-162019-10-232019-10-30

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_20.0_24819.2NR_20.0_24819.13.0(11) 1ASY|1|R, 1ASY|1|S, 1ASZ|1|R, 1ASZ|1|S, 1IL2|1|C, 1IL2|1|D, 1VTQ|1|A, 2TRA|1|A, 3J16|1|L, 3TRA|1|A, 4V6I|1|CB(1) 3IZ7|1|B(0)

Children

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLength
11IL2|1|CCrystal Structure of the E. coli Aspartyl-tRNA Synthetase:Yeast tRNAasp:aspartyl-Adenylate ComplexX-RAY DIFFRACTION2.667
21ASY|1|RCLASS II AMINOACYL TRANSFER RNA SYNTHETASES: CRYSTAL STRUCTURE OF YEAST ASPARTYL-TRNA SYNTHETASE COMPLEXED WITH TRNA ASPX-RAY DIFFRACTION2.967
31ASZ|1|RTHE ACTIVE SITE OF YEAST ASPARTYL-TRNA SYNTHETASE: STRUCTURAL AND FUNCTIONAL ASPECTS OF THE AMINOACYLATION REACTIONX-RAY DIFFRACTION367
41ASZ|1|STHE ACTIVE SITE OF YEAST ASPARTYL-TRNA SYNTHETASE: STRUCTURAL AND FUNCTIONAL ASPECTS OF THE AMINOACYLATION REACTIONX-RAY DIFFRACTION367
51ASY|1|SCLASS II AMINOACYL TRANSFER RNA SYNTHETASES: CRYSTAL STRUCTURE OF YEAST ASPARTYL-TRNA SYNTHETASE COMPLEXED WITH TRNA ASPX-RAY DIFFRACTION2.967
61IL2|1|DCrystal Structure of the E. coli Aspartyl-tRNA Synthetase:Yeast tRNAasp:aspartyl-Adenylate ComplexX-RAY DIFFRACTION2.662
72TRA|1|ARESTRAINED REFINEMENT OF TWO CRYSTALLINE FORMS OF YEAST ASPARTIC ACID AND PHENYLALANINE TRANSFER RNA CRYSTALSX-RAY DIFFRACTION370
81VTQ|1|ATHREE-DIMENSIONAL STRUCTURE OF YEAST T-RNA-ASP. I. STRUCTURE DETERMINATIONX-RAY DIFFRACTION367
93TRA|1|ARESTRAINED REFINEMENT OF TWO CRYSTALLINE FORMS OF YEAST ASPARTIC ACID AND PHENYLALANINE TRANSFER RNA CRYSTALSX-RAY DIFFRACTION364
103IZ7|1|BModel of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosomeELECTRON MICROSCOPY5.575
114V6I|1|CBLocalization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosomeELECTRON MICROSCOPY8.875
123J16|1|LModels of ribosome-bound Dom34p and Rli1p and their ribosomal binding partnersELECTRON MICROSCOPY7.275

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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