Equivalence class NR_20.0_34640.2 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6KE6|1|SA+ 6KE6|1|5A+ 6KE6|1|3A (rep) | Small subunit ribosomal RNA + U3 small nucleolar RNA | 18S rRNA, 5' ETS, U3 snoRNA | Saccharomyces cerevisiae | Eukarya | RF01960 + RF01846 | 3.4 angstrom cryo-EM structure of yeast 90S small subunit preribosome | Electron microscopy | 3.4 | 2020-08-05 |
| 2 | 5WLC|1|L1+ 5WLC|1|L0+ 5WLC|1|L2 | Small subunit ribosomal RNA + U3 small nucleolar RNA | 18S pre-rRNA, 5' ETS, U3 snoRNA | Saccharomyces cerevisiae | Eukarya | RF01960 + RF01846 | The complete structure of the small subunit processome | Electron microscopy | 3.8 | 2017-09-27 |
| 3 | 5WYK|1|SA+ 5WYK|1|5A+ 5WYK|1|3A | Small subunit ribosomal RNA + U3 small nucleolar RNA | 18S ribosomal RNA, 5ETS RNA, U3 RNA | Saccharomyces cerevisiae | Eukarya | RF01960 + RF01846 | Cryo-EM structure of the 90S small subunit pre-ribosome (Mtr4-depleted, Enp1-TAP) | Electron microscopy | 4.5 | 2017-03-29 |
| 4 | 5TZS|1|1 | Small subunit ribosomal RNA | 18S ribosomal RNA | Saccharomyces cerevisiae | Eukarya | RF01960 | Architecture of the yeast small subunit processome | Electron microscopy | 5.1 | 2016-12-21 |
| 5 | 5WYJ|1|SA+ 5WYJ|1|5A+ 5WYJ|1|3A | Small subunit ribosomal RNA + U3 small nucleolar RNA | 18S ribosomal RNA, 5ETS RNA, U3 RNA | Saccharomyces cerevisiae | Eukarya | RF01960 + RF01846 | Cryo-EM structure of the 90S small subunit pre-ribosome (Dhr1-depleted, Enp1-TAP, state 1) | Electron microscopy | 8.7 | 2017-03-29 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_20.0_34640.2 | NR_20.0_34640.1 | 3.138 | (4) 5TZS|1|1, 5WLC|1|L1+5WLC|1|L0+5WLC|1|L2, 5WYJ|1|SA+5WYJ|1|5A+5WYJ|1|3A, 5WYK|1|SA+5WYK|1|5A+5WYK|1|3A | (1) 6KE6|1|SA+6KE6|1|5A+6KE6|1|3A | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_20.0_34640.2 | NR_20.0_33014.1 | 3.144 | (5) 5TZS|1|1, 5WLC|1|L1+5WLC|1|L0+5WLC|1|L2, 5WYJ|1|SA+5WYJ|1|5A+5WYJ|1|3A, 5WYK|1|SA+5WYK|1|5A+5WYK|1|3A, 6KE6|1|SA+6KE6|1|5A+6KE6|1|3A | (0) | (7) 6LQP|1|SA+6LQP|1|5A+6LQP|1|3A, 6LQQ|1|SA+6LQQ|1|5A+6LQQ|1|3A, 6LQR|1|SA+6LQR|1|5A+6LQR|1|3A, 6LQS|1|SA, 6LQT|1|SA+6LQT|1|3A+6LQT|1|5A, 6LQU|1|SA+6LQU|1|5A+6LQU|1|3A, 6LQV|1|SA+6LQV|1|3A+6LQV|1|5A |
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 5WYJ|1|SA+ 5WYJ|1|5A+ 5WYJ|1|3A | Cryo-EM structure of the 90S small subunit pre-ribosome (Dhr1-depleted, Enp1-TAP, state 1) | ELECTRON MICROSCOPY | 8.7 | 1115 | |
| 2 | 5WYK|1|SA+ 5WYK|1|5A+ 5WYK|1|3A | Cryo-EM structure of the 90S small subunit pre-ribosome (Mtr4-depleted, Enp1-TAP) | ELECTRON MICROSCOPY | 4.5 | 1000 | |
| 3 | 5TZS|1|1 | Architecture of the yeast small subunit processome | ELECTRON MICROSCOPY | 5.1 | 515 | |
| 4 | 6KE6|1|SA+ 6KE6|1|5A+ 6KE6|1|3A | 3.4 angstrom cryo-EM structure of yeast 90S small subunit preribosome | ELECTRON MICROSCOPY | 3.4 | 1310 | |
| 5 | 5WLC|1|L1+ 5WLC|1|L0+ 5WLC|1|L2 | The complete structure of the small subunit processome | ELECTRON MICROSCOPY | 3.8 | 1025 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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