#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
12Z75|1|B (rep)glmS glucosamine-6-phosphate activated ribozymeglmS ribozyme RNACaldanaerobacter subterraneusBacteriaRF00234T. tengcongensis glmS ribozyme bound to glucosamine-6-phosphateX-ray diffraction1.72007-09-04
22GCV|1|BglmS ribozyme product oligonucleotide, glmS ribozyme RNAPost-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozymeX-ray diffraction2.12006-09-26
32Z74|1|BglmS ribozyme RNAT. tengcongensis glmS ribozyme bound to glucose-6-phosphateX-ray diffraction2.22007-09-04
42H0X|1|BglmS ribozyme amino RNA inhibitor, glmS ribozyme RNAPre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozymeX-ray diffraction2.32006-09-26
52H0W|1|BglmS ribozyme product oligonucleotide, glmS ribozyme RNAPost-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozymeX-ray diffraction2.42006-09-26
62GCS|1|BglmS ribozyme amino RNA inhibitor, glmS ribozyme RNAPre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozymeX-ray diffraction2.12006-09-26
73B4B|1|BglmS glucosamine-6-phosphate activated ribozymeglmS ribozyme RNA, glmS ribozyme substrate with 2'5'-phosphodiester linkageCaldanaerobacter subterraneusBacteriaRF00234T. tengcongensis glmS ribozyme with G40A mutation, bound to glucosamine-6-phosphate and a substrate RNA with a 2'5'-phosphodiester linkageX-ray diffraction2.72007-12-11
82HO6|1|BglmS ribozyme RNA, glmS ribozyme substrate RNAPost-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozymeX-ray diffraction2.82006-09-26
92HO7|1|BglmS ribozyme RNA, glmS ribozyme substrate RNAPre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme bound to glucose-6-phosphateX-ray diffraction2.92006-09-26
103B4A|1|BglmS glucosamine-6-phosphate activated ribozymeglmS ribozyme RNA, glmS ribozyme substrate RNACaldanaerobacter subterraneusBacteriaRF00234T. tengcongensis glmS ribozyme with G40A mutation, bound to glucosamine-6-phosphateX-ray diffraction2.72007-12-11
114MEG|1|B(121-MER) ribozyme, glmS triple mutant ribozymeIn vitro evolved glmS ribozyme triple mutant, magnesium ion complexX-ray diffraction3.12013-10-16
123B4C|1|BglmS glucosamine-6-phosphate activated ribozymeglmS ribozyme RNA, glmS ribozyme substrate with a 2'5'-phosphodiester linkageCaldanaerobacter subterraneusBacteriaRF00234T. tengcongensis glmS ribozyme bound to glucosamine-6-phosphate and a substrate RNA with a 2'5'-phosphodiester linkageX-ray diffraction32007-12-11
134MEH|1|B(122-MER) ribozyme, glmS triple mutant ribozymeIn vitro evolved glmS ribozyme triple mutant, calcium ion complexX-ray diffraction3.122013-10-16

Release history

Release3.523.533.543.553.563.573.583.593.603.613.623.633.643.653.663.673.683.693.703.713.723.733.743.753.763.773.783.793.803.813.823.833.843.853.863.873.883.893.903.913.923.933.943.953.963.973.983.993.1003.1013.1023.1033.1043.1053.1063.1073.1083.1093.1103.1113.1123.1133.1143.115
Date2018-12-142018-12-212018-12-282019-01-042019-01-112019-01-182019-01-252019-02-012019-02-082019-02-152019-02-222019-03-012019-03-082019-03-152019-03-222019-03-292019-04-052019-04-122019-04-192019-04-262019-05-032019-05-102019-05-172019-05-242019-05-312019-06-072019-06-142019-06-212019-06-282019-07-052019-07-122019-07-192019-07-262019-08-022019-08-092019-08-162019-08-232019-08-282019-09-042019-09-112019-09-192019-09-252019-10-032019-10-092019-10-162019-10-232019-10-302019-11-062019-11-132019-11-202019-11-272019-12-042019-12-112019-12-182019-12-252020-01-012020-01-082020-01-152020-01-222020-01-292020-02-052020-02-122020-02-192020-02-26

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_20.0_35133.4NR_20.0_35133.33.52(13) 2GCS|1|B, 2GCV|1|B, 2H0W|1|B, 2H0X|1|B, 2HO6|1|B, 2HO7|1|B, 2Z74|1|B, 2Z75|1|B, 3B4A|1|B, 3B4B|1|B, 3B4C|1|B, 4MEG|1|B, 4MEH|1|B(0) (2) 2H0S|1|B, 2H0Z|1|B

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_20.0_35133.4NR_20.0_35133.53.116(13) 2GCS|1|B, 2GCV|1|B, 2H0W|1|B, 2H0X|1|B, 2HO6|1|B, 2HO7|1|B, 2Z74|1|B, 2Z75|1|B, 3B4A|1|B, 3B4B|1|B, 3B4C|1|B, 4MEG|1|B, 4MEH|1|B(0) (1) 2H0S|1|B

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLength
14MEG|1|BIn vitro evolved glmS ribozyme triple mutant, magnesium ion complexX-RAY DIFFRACTION3.1121
22GCV|1|BPost-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozymeX-RAY DIFFRACTION2.1122
32H0W|1|BPost-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozymeX-RAY DIFFRACTION2.4122
42HO6|1|BPost-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozymeX-RAY DIFFRACTION2.8122
52HO7|1|BPre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozyme bound to glucose-6-phosphateX-RAY DIFFRACTION2.9122
63B4B|1|BT. tengcongensis glmS ribozyme with G40A mutation, bound to glucosamine-6-phosphate and a substrate RNA with a 2'5'-phosphodiester linkageX-RAY DIFFRACTION2.7123
72GCS|1|BPre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozymeX-RAY DIFFRACTION2.1122
82H0X|1|BPre-cleavage state of the Thermoanaerobacter tengcongensis glmS ribozymeX-RAY DIFFRACTION2.3122
92Z75|1|BT. tengcongensis glmS ribozyme bound to glucosamine-6-phosphateX-RAY DIFFRACTION1.7123
102Z74|1|BT. tengcongensis glmS ribozyme bound to glucose-6-phosphateX-RAY DIFFRACTION2.2123
113B4A|1|BT. tengcongensis glmS ribozyme with G40A mutation, bound to glucosamine-6-phosphateX-RAY DIFFRACTION2.7121
123B4C|1|BT. tengcongensis glmS ribozyme bound to glucosamine-6-phosphate and a substrate RNA with a 2'5'-phosphodiester linkageX-RAY DIFFRACTION3121
134MEH|1|BIn vitro evolved glmS ribozyme triple mutant, calcium ion complexX-RAY DIFFRACTION3.12122

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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