NR_20.0_35542.1

Members (134)
History
Heat map

#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	Date
1	4P70\|1\|XV (rep)	Transfer RNA	A site ASL of tRNA-Proline CGG (unmodified), mRNA, P-site tRNA fMET	Escherichia coli	Bacteria	RF00005	Crystal Structure of Unmodified tRNA Proline (CGG) Bound to Codon CCG on the Ribosome	X-ray diffraction	3.68	2014-08-13
2	4V9R\|1\|AX	Transfer RNA	mRNA, P-site tRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of antibiotic DITYROMYCIN bound to 70S ribosome	X-ray diffraction	3	2014-07-09
3	4V9S\|1\|AX	Transfer RNA	mRNA, P-site tRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of antibiotic GE82832 bound to 70S ribosome	X-ray diffraction	3.1	2014-07-09
4	4V7B\|1\|AV	Transfer RNA	messenger RNA, modified formyl-methionine specific initiator transfer RNA	Escherichia coli	Bacteria	RF00005	Visualization of two tRNAs trapped in transit during EF-G-mediated translocation	Electron microscopy	6.8	2014-07-09
5	4V5F\|1\|AV	Transfer RNA	E-SITE TRNA FMET OR P-SITE TRNA FMET (UNMODIFIED BASES EXCEPT FOR THYMINE 54), MRNA	Escherichia coli	Bacteria	RF00005	The structure of the ribosome with elongation factor G trapped in the post-translocational state	X-ray diffraction	3.6	2014-07-09
6	4V9S\|1\|CX	Transfer RNA	mRNA, P-site tRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of antibiotic GE82832 bound to 70S ribosome	X-ray diffraction	3.1	2014-07-09
7	4V9R\|1\|CX	Transfer RNA	mRNA, P-site tRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of antibiotic DITYROMYCIN bound to 70S ribosome	X-ray diffraction	3	2014-07-09
8	4V7M\|1\|AX	Transfer RNA	RNA (5'-R(APAPAPAPAPGPGPAPAPAPUPAAPAPAPAPUPGPCPAPGPUPUPCPAPAPUPCPUPA)-3'), tRNA-Met	Escherichia coli	Bacteria	RF00005	The structures of Capreomycin bound to the 70S ribosome.	X-ray diffraction	3.45	2014-07-09
9	4V67\|1\|AY	Transfer RNA	MRNA, P AND E-SITE TRNA(FMET)	Escherichia coli	Bacteria	RF00005	Crystal structure of a translation termination complex formed with release factor RF2.	X-ray diffraction	3	2014-07-09
10	4V63\|1\|AY	Transfer RNA	mRNA, P and E-site tRNA(fMet)	Escherichia coli	Bacteria	RF00005	Structural basis for translation termination on the 70S ribosome.	X-ray diffraction	3.21	2014-07-09
11	4V87\|1\|BC	Transfer RNA	MRNA, TRNA-FMET	Escherichia coli	Bacteria	RF00005	Crystal structure analysis of ribosomal decoding.	X-ray diffraction	3.1	2014-07-09
12	4V8F\|1\|CC	Transfer RNA	MRNA, TRNA-FMET	Escherichia coli	Bacteria	RF00005	Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).	X-ray diffraction	3.3	2014-07-09
13	4V9I\|1\|CV	Transfer RNA	mRNA, P-SITE tRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon	X-ray diffraction	3.3	2014-07-09
14	4V6A\|1\|CW	Transfer RNA	RNA (5'-R(PAPAPAPUP*G)-3'), tRNA-Met	Escherichia coli	Bacteria	RF00005	Structure of EF-P bound to the 70S ribosome.	X-ray diffraction	3.1	2014-07-09
15	4V63\|1\|CY	Transfer RNA	mRNA, P and E-site tRNA(fMet)	Escherichia coli	Bacteria	RF00005	Structural basis for translation termination on the 70S ribosome.	X-ray diffraction	3.21	2014-07-09
16	4V67\|1\|CY	Transfer RNA	MRNA, P AND E-SITE TRNA(FMET)	Escherichia coli	Bacteria	RF00005	Crystal structure of a translation termination complex formed with release factor RF2.	X-ray diffraction	3	2014-07-09
17	4V8C\|1\|DC	Transfer RNA	MRNA, TRNA-FMET	Escherichia coli	Bacteria	RF00005	Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).	X-ray diffraction	3.3	2014-07-09
18	4V5F\|1\|CV	Transfer RNA	E-SITE TRNA FMET OR P-SITE TRNA FMET (UNMODIFIED BASES EXCEPT FOR THYMINE 54), MRNA	Escherichia coli	Bacteria	RF00005	The structure of the ribosome with elongation factor G trapped in the post-translocational state	X-ray diffraction	3.6	2014-07-09
19	4V8B\|1\|AC	Transfer RNA	MRNA, TRNA-FMET	Escherichia coli	Bacteria	RF00005	Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).	X-ray diffraction	3	2014-07-09
20	4V63\|1\|AZ	Transfer RNA	P and E-site tRNA(fMet)	Escherichia coli	Bacteria	RF00005	Structural basis for translation termination on the 70S ribosome.	X-ray diffraction	3.21	2014-07-09
21	4V67\|1\|AZ	Transfer RNA	P AND E-SITE TRNA(FMET)	Escherichia coli	Bacteria	RF00005	Crystal structure of a translation termination complex formed with release factor RF2.	X-ray diffraction	3	2014-07-09
22	4V8E\|1\|BC	Transfer RNA	MRNA, TRNA-FMET	Escherichia coli	Bacteria	RF00005	Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).	X-ray diffraction	3.3	2014-07-09
23	4V8Q\|1\|BV	Transfer RNA	E-SITE or P-SITE TRNA FMET, MRNA	Escherichia coli	Bacteria	RF00005	Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome	X-ray diffraction	3.1	2014-07-09
24	4V8B\|1\|CC	Transfer RNA	MRNA, TRNA-FMET	Escherichia coli	Bacteria	RF00005	Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).	X-ray diffraction	3	2014-07-09
25	4V6G\|1\|CC	Transfer RNA	MRNA, TRNA FMET (UNMODIFIED BASES)	Escherichia coli	Bacteria	RF00005	Initiation complex of 70S ribosome with two tRNAs and mRNA.	X-ray diffraction	3.5	2014-07-09
26	4V8C\|1\|CC	Transfer RNA	MRNA, TRNA-FMET	Escherichia coli	Bacteria	RF00005	Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).	X-ray diffraction	3.3	2014-07-09
27	4V8J\|1\|CV	Transfer RNA	messenger RNA, tRNA-fMet, tRNA-Phe	Escherichia coli	Bacteria	RF00005	Crystal structure of the bacterial ribosome ram mutation G347U.	X-ray diffraction	3.9	2014-07-09
28	4V63\|1\|CZ	Transfer RNA	P and E-site tRNA(fMet)	Escherichia coli	Bacteria	RF00005	Structural basis for translation termination on the 70S ribosome.	X-ray diffraction	3.21	2014-07-09
29	4V67\|1\|CZ	Transfer RNA	P AND E-SITE TRNA(FMET)	Escherichia coli	Bacteria	RF00005	Crystal structure of a translation termination complex formed with release factor RF2.	X-ray diffraction	3	2014-07-09
30	4V8E\|1\|DC	Transfer RNA	MRNA, TRNA-FMET	Escherichia coli	Bacteria	RF00005	Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).	X-ray diffraction	3.3	2014-07-09
31	4P70\|1\|QV	Transfer RNA	A site ASL of tRNA-Proline CGG (unmodified), mRNA, P-site tRNA fMET	Escherichia coli	Bacteria	RF00005	Crystal Structure of Unmodified tRNA Proline (CGG) Bound to Codon CCG on the Ribosome	X-ray diffraction	3.68	2014-08-13
32	4LT8\|1\|QV	Transfer RNA	A-site ASL Pro, messenger RNA, P-site tRNA fMet	Escherichia coli	Bacteria	RF00005	Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-G on the Ribosome	X-ray diffraction	3.14	2014-08-06
33	4P6F\|1\|XV	Transfer RNA	E-Site tRNA-Phe or A-Site tRNA-Phe, mRNA, tRNA-fMet	Escherichia coli	Bacteria	RF00005	Crystal structure of the peptolide 12C bound to bacterial ribosome	X-ray diffraction	3.6	2014-10-01
34	4LT8\|1\|XV	Transfer RNA	A-site ASL Pro, messenger RNA, P-site tRNA fMet	Escherichia coli	Bacteria	RF00005	Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-G on the Ribosome	X-ray diffraction	3.14	2014-08-06
35	4LNT\|1\|XV	Transfer RNA	A-site ASL SufA6, messenger RNA, P-site tRNA fMet	Escherichia coli	Bacteria	RF00005	Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the Ribosome	X-ray diffraction	2.94	2014-08-06
36	3CW5\|1\|A	Transfer RNA	Initiator tRNA	Escherichia coli	Bacteria	RF00005	E. coli Initiator tRNA	X-ray diffraction	3.1	2008-09-02
37	4W2G\|1\|AX	Transfer RNA	E-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites	X-ray diffraction	2.55	2014-10-15
38	4W2F\|1\|AX	Transfer RNA	E-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites	X-ray diffraction	2.4	2014-10-15
39	4W2H\|1\|AX	Transfer RNA	mRNA, P-site tRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site	X-ray diffraction	2.7	2014-10-15
40	4W2I\|1\|AX	Transfer RNA	E-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites	X-ray diffraction	2.7	2014-10-15
41	1VY5\|1\|AX	Transfer RNA	mRNA, P-site tRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.	X-ray diffraction	2.55	2014-08-20
42	1VY5\|1\|CX	Transfer RNA	mRNA, P-site tRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.	X-ray diffraction	2.55	2014-08-20
43	4W2F\|1\|CX	Transfer RNA	E-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites	X-ray diffraction	2.4	2014-10-15
44	4W2I\|1\|CX	Transfer RNA	E-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites	X-ray diffraction	2.7	2014-10-15
45	4W2G\|1\|CX	Transfer RNA	E-site tRNA, mRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites	X-ray diffraction	2.55	2014-10-15
46	4V4Z\|1\|AC	Transfer RNA	mRNA, tRNA fMET (unmodified bases)	Escherichia coli	Bacteria	RF00005	70S Thermus thermophilous ribosome functional complex with mRNA and E- and P-site tRNAs at 4.5A.	X-ray diffraction	4.51	2014-07-09
47	4V5C\|1\|AV	Transfer RNA	MRNA, P-SITE TRNA FMET	Escherichia coli	Bacteria	RF00005	Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.	X-ray diffraction	3.3	2014-07-09
48	1VY7\|1\|AX	Transfer RNA	mRNA, P-site tRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.	X-ray diffraction	2.8	2014-08-20
49	1VY6\|1\|AX	Transfer RNA	mRNA, P-site tRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.	X-ray diffraction	2.9	2014-08-20
50	1VY4\|1\|AX	Transfer RNA	mRNA, P-site tRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.	X-ray diffraction	2.6	2014-08-20
51	1VY6\|1\|CX	Transfer RNA	mRNA, P-site tRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.	X-ray diffraction	2.9	2014-08-20
52	4V8D\|1\|AC	Transfer RNA	MRNA, TRNA-FMET	Escherichia coli	Bacteria	RF00005	Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).	X-ray diffraction	3	2014-07-09
53	4V9I\|1\|AV	Transfer RNA	mRNA, P-SITE tRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon	X-ray diffraction	3.3	2014-07-09
54	4V6A\|1\|AW	Transfer RNA	RNA (5'-R(PAPAPAPUP*G)-3'), tRNA-Met	Escherichia coli	Bacteria	RF00005	Structure of EF-P bound to the 70S ribosome.	X-ray diffraction	3.1	2014-07-09
55	4V87\|1\|CC	Transfer RNA	MRNA, TRNA-FMET	Escherichia coli	Bacteria	RF00005	Crystal structure analysis of ribosomal decoding.	X-ray diffraction	3.1	2014-07-09
56	4V7M\|1\|CX	Transfer RNA	RNA (5'-R(APAPAPAPAPGPGPAPAPAPUPAAPAPAPAPUPGPCPAPGPUPUPCPAPAPUPCPUPA)-3'), RNA (77-MER)	Escherichia coli	Bacteria	RF00005	The structures of Capreomycin bound to the 70S ribosome.	X-ray diffraction	3.45	2014-07-09
57	3J5S\|1\|E	Transfer RNA	P-site tRNA FMet	Escherichia coli	Bacteria	RF00005	EttA binds to ribosome exit site and regulates translation by restricting ribosome and tRNA dynamics	Electron microscopy	7.5	2014-01-08
58	3J78\|1\|ET	Transfer RNA	P/E-site initiator transfer RNAfMet	Escherichia coli	Bacteria	RF00005	Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)	Electron microscopy	6.3	2014-08-06
59	3J77\|1\|PT	Transfer RNA	messenger RNA, P/E-site initiator transfer RNAfMet	Escherichia coli	Bacteria	RF00005	Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)	Electron microscopy	6.2	2014-08-06
60	4LNT\|1\|QV	Transfer RNA	A-site ASL SufA6, messenger RNA, P-site tRNA fMet	Escherichia coli	Bacteria	RF00005	Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the Ribosome	X-ray diffraction	2.94	2014-08-06
61	4P6F\|1\|QV	Transfer RNA	E-Site tRNA-Phe or A-Site tRNA-Phe, mRNA, tRNA-fMet	Escherichia coli	Bacteria	RF00005	Crystal structure of the peptolide 12C bound to bacterial ribosome	X-ray diffraction	3.6	2014-10-01
62	3CW6\|1\|A	Transfer RNA	Initiator tRNA	Escherichia coli	Bacteria	RF00005	E. coli Initiator tRNA	X-ray diffraction	3.3	2008-09-02
63	4V6Y\|1\|A3	Transfer RNA	5'-R(APCPUPAPUPGPGPUPUPUPUPUPAPUP*U)-3', tRNA-fMet	Escherichia coli	Bacteria	RF00005	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1a)	Electron microscopy	12	2014-07-09
64	4V73\|1\|A3	Transfer RNA	5'-R(APCPUPAPUPGPGPUPUPUPUPUPAPUP*U)-3', tRNA-fMet	Escherichia coli	Bacteria	RF00005	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre5a)	Electron microscopy	15	2014-07-09
65	4V6R\|1\|AD	Transfer RNA	mRNA, P site tRNA	Escherichia coli	Bacteria	RF00005	Structural characterization of mRNA-tRNA translocation intermediates (class 6 of the six classes)	Electron microscopy	11.5	2014-07-09
66	4V8D\|1\|CC	Transfer RNA	MRNA, TRNA-FMET	Escherichia coli	Bacteria	RF00005	Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).	X-ray diffraction	3	2014-07-09
67	4V97\|1\|CV	Transfer RNA	E-SITE TRNA PHE OR A-SITE tRNA Phe, mRNA, P-SITE tRNA fMet	Escherichia coli	Bacteria	RF00005	Crystal structure of the bacterial ribosome ram mutation G299A.	X-ray diffraction	3.52	2014-07-09
68	3J78\|1\|PT	Transfer RNA	messenger RNA, P/E-site initiator transfer RNAfMet	Escherichia coli	Bacteria	RF00005	Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)	Electron microscopy	6.3	2014-08-06
69	1VVJ\|1\|QV	Transfer RNA	A-site ASL SufA6, messenger RNA, P-site tRNA fMet	Escherichia coli	Bacteria	RF00005	Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome	X-ray diffraction	3.44	2014-08-06
70	4LSK\|1\|QV	Transfer RNA	A-site ASL SufA6, messenger RNA, P-site tRNA fMet	Escherichia coli	Bacteria	RF00005	Crystal Structure of tRNA Proline (CGG) Bound to Codon CCG-G on the Ribosome	X-ray diffraction	3.48	2014-08-06
71	4L71\|1\|QV	Transfer RNA	A-site ASL SufA6, messenger RNA, P-site tRNA fMet	Escherichia coli	Bacteria	RF00005	Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-A on the Ribosome	X-ray diffraction	3.9	2014-08-06
72	4LFZ\|1\|QV	Transfer RNA	A-site ASL SufA6, messenger RNA, P-site tRNA fMet	Escherichia coli	Bacteria	RF00005	Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U in the Absence of Paromomycin	X-ray diffraction	3.92	2014-08-06
73	4LEL\|1\|QV	Transfer RNA	A-site ASL SufA6, messenger RNA, P-site tRNA fMet	Escherichia coli	Bacteria	RF00005	Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCG-G on the Ribosome	X-ray diffraction	3.9	2014-08-06
74	4LFZ\|1\|XV	Transfer RNA	A-site ASL SufA6, messenger RNA, P-site tRNA fMet	Escherichia coli	Bacteria	RF00005	Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U in the Absence of Paromomycin	X-ray diffraction	3.92	2014-08-06
75	4LEL\|1\|XV	Transfer RNA	A-site ASL SufA6, messenger RNA, P-site tRNA fMet	Escherichia coli	Bacteria	RF00005	Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCG-G on the Ribosome	X-ray diffraction	3.9	2014-08-06
76	1VVJ\|1\|XV	Transfer RNA	A-site ASL SufA6, messenger RNA, P-site tRNA fMet	Escherichia coli	Bacteria	RF00005	Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome	X-ray diffraction	3.44	2014-08-06
77	4LSK\|1\|XV	Transfer RNA	A-site ASL SufA6, messenger RNA, P-site tRNA fMet	Escherichia coli	Bacteria	RF00005	Crystal Structure of tRNA Proline (CGG) Bound to Codon CCG-G on the Ribosome	X-ray diffraction	3.48	2014-08-06
78	4L71\|1\|XV	Transfer RNA	A-site ASL SufA6, messenger RNA, P-site tRNA fMet	Escherichia coli	Bacteria	RF00005	Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-A on the Ribosome	X-ray diffraction	3.9	2014-08-06
79	4V6G\|1\|CB	Transfer RNA	MRNA, TRNA FMET (UNMODIFIED BASES)	Escherichia coli	Bacteria	RF00005	Initiation complex of 70S ribosome with two tRNAs and mRNA.	X-ray diffraction	3.5	2014-07-09
80	4V6Z\|1\|A3	Transfer RNA	5'-R(APCPUPAPUPGPGPUPUPUPUPUPAPUP*U)-3', tRNA-fMet	Escherichia coli	Bacteria	RF00005	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1b)	Electron microscopy	12	2014-07-09
81	4V6P\|1\|AD	Transfer RNA	mRNA, P site tRNA	Escherichia coli	Bacteria	RF00005	Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)	Electron microscopy	13.5	2014-07-09
82	4V6O\|1\|AD	Transfer RNA	mRNA, P site tRNA	Escherichia coli	Bacteria	RF00005	Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)	Electron microscopy	14.7	2014-07-09
83	4W2H\|1\|CX	Transfer RNA	mRNA, P-site tRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site	X-ray diffraction	2.7	2014-10-15
84	4V69\|1\|AV	Transfer RNA	E-site tRNA Phe, mRNA	Escherichia coli	Bacteria	RF00005	Ternary complex-bound E.coli 70S ribosome.	Electron microscopy	6.7	2014-07-09
85	4V51\|1\|AV	Transfer RNA	E-SITE TRNA PHE OR A-SITE TRNA PHE (UNMODIFIED BASES), MRNA, P-SITE TRNA FMET (UNMODIFIED BASES EXCEPT FOR THYMINE 54)	Escherichia coli	Bacteria	RF00005	Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin	X-ray diffraction	2.8	2014-07-09
86	3DEG\|1\|B	Transfer RNA	P-tRNA	Escherichia coli	Bacteria	RF00005	Complex of elongating Escherichia coli 70S ribosome and EF4(LepA)-GMPPNP	Electron microscopy	10.9	2008-08-19
87	4V51\|1\|CV	Transfer RNA	E-SITE TRNA PHE OR A-SITE TRNA PHE (UNMODIFIED BASES), MRNA, P-SITE TRNA FMET (UNMODIFIED BASES EXCEPT FOR THYMINE 54)	Escherichia coli	Bacteria	RF00005	Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin	X-ray diffraction	2.8	2014-07-09
88	4V5F\|1\|CW	Transfer RNA	E-SITE TRNA FMET OR P-SITE TRNA FMET (UNMODIFIED BASES EXCEPT FOR THYMINE 54)	Escherichia coli	Bacteria	RF00005	The structure of the ribosome with elongation factor G trapped in the post-translocational state	X-ray diffraction	3.6	2014-07-09
89	4V6G\|1\|AC	Transfer RNA	MRNA, TRNA FMET (UNMODIFIED BASES)	Escherichia coli	Bacteria	RF00005	Initiation complex of 70S ribosome with two tRNAs and mRNA.	X-ray diffraction	3.5	2014-07-09
90	4V5K\|1\|AV	Transfer RNA	E-SITE TRNA PHE OR P-SITE TRNA PHE, MRNA	Escherichia coli	Bacteria	RF00005	Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome	X-ray diffraction	3.2	2014-07-09
91	4V97\|1\|AV	Transfer RNA	E-SITE TRNA PHE OR A-SITE tRNA Phe, mRNA, P-SITE tRNA fMet	Escherichia coli	Bacteria	RF00005	Crystal structure of the bacterial ribosome ram mutation G299A.	X-ray diffraction	3.52	2014-07-09
92	4V7P\|1\|AW	Transfer RNA	messenger RNA (5'-R(APAPUPGPUPAP*G)-3'), P-site tRNA-fMet	Escherichia coli	Bacteria	RF00005	Recognition of the amber stop codon by release factor RF1.	X-ray diffraction	3.62	2014-07-09
93	4V7L\|1\|AX	Transfer RNA	RNA (5'-R(APAPAPAPAPGPGPAPAPAPUPAAPAPAPAPUPGPCPAPGPUPUPCPAPAPUPCPUPA)-3'), tRNA-Met	Escherichia coli	Bacteria	RF00005	The structures of viomycin bound to the 70S ribosome.	X-ray diffraction	3	2014-07-09
94	4V7P\|1\|DW	Transfer RNA	messenger RNA (5'-R(APAPUPGPUPAP*G)-3'), P-site tRNA-fMet	Escherichia coli	Bacteria	RF00005	Recognition of the amber stop codon by release factor RF1.	X-ray diffraction	3.62	2014-07-09
95	1VY7\|1\|CX	Transfer RNA	mRNA, P-site tRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.	X-ray diffraction	2.8	2014-08-20
96	1VY4\|1\|CX	Transfer RNA	mRNA, P-site tRNA	Escherichia coli	Bacteria	RF00005	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.	X-ray diffraction	2.6	2014-08-20
97	4V6V\|1\|A3	Transfer RNA	mRNA, P-tRNA	Escherichia coli	Bacteria	RF00005	Tetracycline resistance protein Tet(O) bound to the ribosome	Electron microscopy	9.8	2014-07-09
98	4V72\|1\|A3	Transfer RNA	5'-R(APCPUPAPUPGPGPUPUPUPUPUPAPUP*U)-3', tRNA-fMet	Escherichia coli	Bacteria	RF00005	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre4)	Electron microscopy	13	2014-07-09
99	4V74\|1\|A3	Transfer RNA	5'-R(APCPUPAPUPGPGPUPUPUPUPUPAPUP*U)-3', tRNA-fMet	Escherichia coli	Bacteria	RF00005	70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre5b)	Electron microscopy	17	2014-07-09
100	4V71\|1\|A3	Transfer RNA	5'-R(APCPUPAPUPGPGPUPUPUPUPUPAPUP*U)-3', tRNA-fMet	Escherichia coli	Bacteria	RF00005	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate pre-translocation state (pre2)	Electron microscopy	20	2014-07-09
101	4V70\|1\|A3	Transfer RNA	tRNA-fMet	Escherichia coli	Bacteria	RF00005	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate pre-translocation state (pre3)	Electron microscopy	17	2014-07-09
102	4V6Q\|1\|AD	Transfer RNA	mRNA, P site tRNA	Escherichia coli	Bacteria	RF00005	Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)	Electron microscopy	11.5	2014-07-09
103	4V6S\|1\|BC	Transfer RNA	mRNA, P site tRNA	Escherichia coli	Bacteria	RF00005	Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)	Electron microscopy	13.1	2014-07-09
104	2FMT\|1\|C		FORMYL-METHIONYL-TRNAFMET2	synthetic construct			METHIONYL-TRNAFMET FORMYLTRANSFERASE COMPLEXED WITH FORMYL-METHIONYL-TRNAFMET	X-ray diffraction	2.8	1999-07-29
105	2FMT\|1\|D		FORMYL-METHIONYL-TRNAFMET2	synthetic construct			METHIONYL-TRNAFMET FORMYLTRANSFERASE COMPLEXED WITH FORMYL-METHIONYL-TRNAFMET	X-ray diffraction	2.8	1999-07-29
106	4V5C\|1\|CV	Transfer RNA	MRNA, P-SITE TRNA FMET	Escherichia coli	Bacteria	RF00005	Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.	X-ray diffraction	3.3	2014-07-09
107	4V8F\|1\|BC	Transfer RNA	MRNA, TRNA-FMET	Escherichia coli	Bacteria	RF00005	Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).	X-ray diffraction	3.3	2014-07-09
108	4V6G\|1\|CD	Transfer RNA	TRNA FMET (UNMODIFIED BASES)	Escherichia coli	Bacteria	RF00005	Initiation complex of 70S ribosome with two tRNAs and mRNA.	X-ray diffraction	3.5	2014-07-09
109	4V78\|1\|A3	Transfer RNA	tRNA-fMet	Escherichia coli	Bacteria	RF00005	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3a)	Electron microscopy	20	2014-07-09
110	4V79\|1\|A3	Transfer RNA	tRNA-fMet	Escherichia coli	Bacteria	RF00005	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3b)	Electron microscopy	15	2014-07-09
111	4V77\|1\|A3	Transfer RNA	tRNA-fMet	Escherichia coli	Bacteria	RF00005	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post2b)	Electron microscopy	17	2014-07-09
112	4V4X\|1\|AC	Transfer RNA	tRNA fMET (unmodified bases)	Escherichia coli	Bacteria	RF00005	Crystal structure of the 70S Thermus thermophilus ribosome showing how the 16S 3'-end mimicks mRNA E and P codons.	X-ray diffraction	5	2014-07-09
113	4V8J\|1\|AV	Transfer RNA	messenger RNA, tRNA-fMet, tRNA-Phe	Escherichia coli	Bacteria	RF00005	Crystal structure of the bacterial ribosome ram mutation G347U.	X-ray diffraction	3.9	2014-07-09
114	4V5K\|1\|CV	Transfer RNA	E-SITE TRNA PHE OR P-SITE TRNA PHE	Escherichia coli	Bacteria	RF00005	Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome	X-ray diffraction	3.2	2014-07-09
115	3V11\|1\|D	Transfer RNA	Initiator tRNA	Escherichia coli	Bacteria	RF00005	Structure of the ternary initiation complex AIF2:GDPNP:methionylated initiator TRNA	X-ray diffraction	5	2012-03-28
116	4V75\|1\|A3	Transfer RNA	tRNA-fMet	Escherichia coli	Bacteria	RF00005	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic post-translocation state (post1)	Electron microscopy	12	2014-07-09
117	4V76\|1\|A3	Transfer RNA	tRNA-fMet	Escherichia coli	Bacteria	RF00005	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post2a)	Electron microscopy	17	2014-07-09
118	4V6G\|1\|AD	Transfer RNA	TRNA FMET (UNMODIFIED BASES)	Escherichia coli	Bacteria	RF00005	Initiation complex of 70S ribosome with two tRNAs and mRNA.	X-ray diffraction	3.5	2014-07-09
119	4V7L\|1\|CX	Transfer RNA	RNA (5'-R(APAPAPAPAPGPGPAPAPAPUPAAPAPAPAPUPGPCPAPGPUPUPCPAPAPUPCPUPA)-3'), tRNA-Met	Escherichia coli	Bacteria	RF00005	The structures of viomycin bound to the 70S ribosome.	X-ray diffraction	3	2014-07-09
120	4V6N\|1\|BD	Transfer RNA	mRNA, P site tRNA	Escherichia coli	Bacteria	RF00005	Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)	Electron microscopy	12.1	2014-07-09
121	4V5F\|1\|AW	Transfer RNA	E-SITE TRNA FMET OR P-SITE TRNA FMET (UNMODIFIED BASES EXCEPT FOR THYMINE 54)	Escherichia coli	Bacteria	RF00005	The structure of the ribosome with elongation factor G trapped in the post-translocational state	X-ray diffraction	3.6	2014-07-09
122	4V8Q\|1\|BW	Transfer RNA	E-SITE or P-SITE TRNA FMET	Escherichia coli	Bacteria	RF00005	Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome	X-ray diffraction	3.1	2014-07-09
123	4V8O\|1\|AV	Transfer RNA	MRNA 5'-R(APAPAPAPAPAPUPGP*UP)-3', PE HYBRID STATE TRNA FMET	Escherichia coli	Bacteria	RF00005	Crystal structure of the hybrid state of ribosome in complex with the guanosine triphosphatase release factor 3	X-ray diffraction	3.8	2014-07-09
124	4V6T\|1\|AX	Transfer RNA	formyl-methionine specific initiator transfer RNA	Escherichia coli	Bacteria	RF00005	Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loading	Electron microscopy	8.3	2014-07-09
125	4V8C\|1\|CD	Transfer RNA	TRNA-FMET	Escherichia coli	Bacteria	RF00005	Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).	X-ray diffraction	3.3	2014-07-09
126	4V8B\|1\|AD	Transfer RNA	TRNA-FMET	Escherichia coli	Bacteria	RF00005	Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).	X-ray diffraction	3	2014-07-09
127	4V87\|1\|CD	Transfer RNA	TRNA-FMET	Escherichia coli	Bacteria	RF00005	Crystal structure analysis of ribosomal decoding.	X-ray diffraction	3.1	2014-07-09
128	4V8C\|1\|DD	Transfer RNA	TRNA-FMET	Escherichia coli	Bacteria	RF00005	Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).	X-ray diffraction	3.3	2014-07-09
129	4V87\|1\|BD	Transfer RNA	TRNA-FMET	Escherichia coli	Bacteria	RF00005	Crystal structure analysis of ribosomal decoding.	X-ray diffraction	3.1	2014-07-09
130	4V8B\|1\|CD	Transfer RNA	TRNA-FMET	Escherichia coli	Bacteria	RF00005	Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).	X-ray diffraction	3	2014-07-09
131	3QSY\|1\|D	Transfer RNA	tRNA	Escherichia coli	Bacteria	RF00005	Recognition of the methionylated initiator tRNA by the translation initiation factor 2 in Archaea	X-ray diffraction	3.2	2012-03-21
132	4V5K\|1\|AW	Transfer RNA	E-SITE TRNA PHE OR P-SITE TRNA PHE	Escherichia coli	Bacteria	RF00005	Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome	X-ray diffraction	3.2	2014-07-09
133	4V5K\|1\|CW	Transfer RNA	E-SITE TRNA PHE OR P-SITE TRNA PHE	Escherichia coli	Bacteria	RF00005	Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome	X-ray diffraction	3.2	2014-07-09
134	1EG0\|1\|O	Transfer RNA	FORMYL-METHIONYL-TRNA	Escherichia coli	Bacteria	RF00005	FITTING OF COMPONENTS WITH KNOWN STRUCTURE INTO AN 11.5 A CRYO-EM MAP OF THE E.COLI 70S RIBOSOME	Electron microscopy	11.5	2000-03-06

Release history

Release	2.0	2.1	2.2	2.3	2.4	2.5	2.6	2.7
Date	2014-12-05	2014-12-12	2014-12-19	2014-12-26	2015-01-02	2015-01-09	2015-01-16	2015-01-23

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#S	PDB	Title	Method	Resolution	Length
1	4V79\|1\|A3	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3b)	ELECTRON MICROSCOPY	15	72
2	4V71\|1\|A3	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate pre-translocation state (pre2)	ELECTRON MICROSCOPY	20	72
3	4V6Z\|1\|A3	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1b)	ELECTRON MICROSCOPY	12	72
4	4V69\|1\|AV	Ternary complex-bound E.coli 70S ribosome.	ELECTRON MICROSCOPY	6.7	76
5	3J5S\|1\|E	EttA binds to ribosome exit site and regulates translation by restricting ribosome and tRNA dynamics	ELECTRON MICROSCOPY	7.5	77
6	4V8J\|1\|AV	Crystal structure of the bacterial ribosome ram mutation G347U.	X-RAY DIFFRACTION	3.9	77
7	4V97\|1\|AV	Crystal structure of the bacterial ribosome ram mutation G299A.	X-RAY DIFFRACTION	3.52	77
8	4V97\|1\|CV	Crystal structure of the bacterial ribosome ram mutation G299A.	X-RAY DIFFRACTION	3.52	77
9	4V8J\|1\|CV	Crystal structure of the bacterial ribosome ram mutation G347U.	X-RAY DIFFRACTION	3.9	77
10	3J78\|1\|PT	Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)	ELECTRON MICROSCOPY	6.3	77
11	4V6G\|1\|AC	Initiation complex of 70S ribosome with two tRNAs and mRNA.	X-RAY DIFFRACTION	3.5	77
12	4V9R\|1\|CX	Crystal structure of antibiotic DITYROMYCIN bound to 70S ribosome	X-RAY DIFFRACTION	3	76
13	4V9S\|1\|CX	Crystal structure of antibiotic GE82832 bound to 70S ribosome	X-RAY DIFFRACTION	3.1	76
14	4W2H\|1\|CX	Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site	X-RAY DIFFRACTION	2.7	72
15	4W2I\|1\|CX	Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites	X-RAY DIFFRACTION	2.7	72
16	1VY4\|1\|CX	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.	X-RAY DIFFRACTION	2.6	71
17	1VY5\|1\|CX	Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.	X-RAY DIFFRACTION	2.55	72
18	4W2G\|1\|CX	Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites	X-RAY DIFFRACTION	2.55	72
19	4W2F\|1\|CX	Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites	X-RAY DIFFRACTION	2.4	72
20	1VY6\|1\|CX	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.	X-RAY DIFFRACTION	2.9	71
21	1VY7\|1\|CX	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.	X-RAY DIFFRACTION	2.8	71
22	4V7L\|1\|CX	The structures of viomycin bound to the 70S ribosome.	X-RAY DIFFRACTION	3	77
23	4V7L\|1\|AX	The structures of viomycin bound to the 70S ribosome.	X-RAY DIFFRACTION	3	77
24	4V5C\|1\|AV	Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.	X-RAY DIFFRACTION	3.3	76
25	4V7M\|1\|CX	The structures of Capreomycin bound to the 70S ribosome.	X-RAY DIFFRACTION	3.45	77
26	4V7M\|1\|AX	The structures of Capreomycin bound to the 70S ribosome.	X-RAY DIFFRACTION	3.45	77
27	4P6F\|1\|XV	Crystal structure of the peptolide 12C bound to bacterial ribosome	X-RAY DIFFRACTION	3.6	77
28	4LNT\|1\|XV	Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the Ribosome	X-RAY DIFFRACTION	2.94	77
29	4P70\|1\|XV	Crystal Structure of Unmodified tRNA Proline (CGG) Bound to Codon CCG on the Ribosome	X-RAY DIFFRACTION	3.68	77
30	4L71\|1\|QV	Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-A on the Ribosome	X-RAY DIFFRACTION	3.9	77
31	4LFZ\|1\|QV	Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U in the Absence of Paromomycin	X-RAY DIFFRACTION	3.92	77
32	1VVJ\|1\|XV	Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome	X-RAY DIFFRACTION	3.44	77
33	4LSK\|1\|XV	Crystal Structure of tRNA Proline (CGG) Bound to Codon CCG-G on the Ribosome	X-RAY DIFFRACTION	3.48	77
34	4L71\|1\|XV	Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-A on the Ribosome	X-RAY DIFFRACTION	3.9	77
35	4LFZ\|1\|XV	Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U in the Absence of Paromomycin	X-RAY DIFFRACTION	3.92	77
36	4LSK\|1\|QV	Crystal Structure of tRNA Proline (CGG) Bound to Codon CCG-G on the Ribosome	X-RAY DIFFRACTION	3.48	77
37	1VVJ\|1\|QV	Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome	X-RAY DIFFRACTION	3.44	77
38	4LEL\|1\|XV	Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCG-G on the Ribosome	X-RAY DIFFRACTION	3.9	77
39	4LEL\|1\|QV	Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCG-G on the Ribosome	X-RAY DIFFRACTION	3.9	77
40	4LT8\|1\|XV	Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-G on the Ribosome	X-RAY DIFFRACTION	3.14	77
41	4P6F\|1\|QV	Crystal structure of the peptolide 12C bound to bacterial ribosome	X-RAY DIFFRACTION	3.6	77
42	4LNT\|1\|QV	Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the Ribosome	X-RAY DIFFRACTION	2.94	77
43	4LT8\|1\|QV	Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-G on the Ribosome	X-RAY DIFFRACTION	3.14	77
44	4P70\|1\|QV	Crystal Structure of Unmodified tRNA Proline (CGG) Bound to Codon CCG on the Ribosome	X-RAY DIFFRACTION	3.68	77
45	4V67\|1\|AY	Crystal structure of a translation termination complex formed with release factor RF2.	X-RAY DIFFRACTION	3	77
46	4V67\|1\|CY	Crystal structure of a translation termination complex formed with release factor RF2.	X-RAY DIFFRACTION	3	77
47	4V7P\|1\|AW	Recognition of the amber stop codon by release factor RF1.	X-RAY DIFFRACTION	3.62	77
48	4V7P\|1\|DW	Recognition of the amber stop codon by release factor RF1.	X-RAY DIFFRACTION	3.62	77
49	4V63\|1\|AY	Structural basis for translation termination on the 70S ribosome.	X-RAY DIFFRACTION	3.21	77
50	4V63\|1\|CY	Structural basis for translation termination on the 70S ribosome.	X-RAY DIFFRACTION	3.21	77
51	4V8Q\|1\|BV	Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome	X-RAY DIFFRACTION	3.1	77
52	4V6A\|1\|CW	Structure of EF-P bound to the 70S ribosome.	X-RAY DIFFRACTION	3.1	77
53	4V6A\|1\|AW	Structure of EF-P bound to the 70S ribosome.	X-RAY DIFFRACTION	3.1	77
54	4V9I\|1\|CV	Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon	X-RAY DIFFRACTION	3.3	77
55	4V51\|1\|AV	Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin	X-RAY DIFFRACTION	2.8	76
56	3DEG\|1\|B	Complex of elongating Escherichia coli 70S ribosome and EF4(LepA)-GMPPNP	ELECTRON MICROSCOPY	10.9	76
57	4V51\|1\|CV	Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin	X-RAY DIFFRACTION	2.8	76
58	4V9I\|1\|AV	Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon	X-RAY DIFFRACTION	3.3	77
59	4V5F\|1\|CV	The structure of the ribosome with elongation factor G trapped in the post-translocational state	X-RAY DIFFRACTION	3.6	76
60	4V5F\|1\|AV	The structure of the ribosome with elongation factor G trapped in the post-translocational state	X-RAY DIFFRACTION	3.6	76
61	4V7B\|1\|AV	Visualization of two tRNAs trapped in transit during EF-G-mediated translocation	ELECTRON MICROSCOPY	6.8	76
62	4V5K\|1\|CV	Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome	X-RAY DIFFRACTION	3.2	77
63	4V5K\|1\|AV	Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome	X-RAY DIFFRACTION	3.2	77
64	4V5C\|1\|CV	Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA.	X-RAY DIFFRACTION	3.3	76
65	4V8D\|1\|CC	Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).	X-RAY DIFFRACTION	3	77
66	4V8F\|1\|CC	Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).	X-RAY DIFFRACTION	3.3	77
67	4V8E\|1\|DC	Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).	X-RAY DIFFRACTION	3.3	77
68	4V8E\|1\|BC	Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).	X-RAY DIFFRACTION	3.3	77
69	4V8D\|1\|AC	Structure analysis of ribosomal decoding (cognate tRNA-tyr complex).	X-RAY DIFFRACTION	3	77
70	4V8F\|1\|BC	Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin).	X-RAY DIFFRACTION	3.3	77
71	4W2I\|1\|AX	Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites	X-RAY DIFFRACTION	2.7	72
72	1VY7\|1\|AX	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site.	X-RAY DIFFRACTION	2.8	71
73	1VY6\|1\|AX	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site.	X-RAY DIFFRACTION	2.9	71
74	4W2F\|1\|AX	Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites	X-RAY DIFFRACTION	2.4	72
75	1VY5\|1\|AX	Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site.	X-RAY DIFFRACTION	2.55	72
76	1VY4\|1\|AX	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites.	X-RAY DIFFRACTION	2.6	71
77	4W2G\|1\|AX	Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites	X-RAY DIFFRACTION	2.55	72
78	4V9S\|1\|AX	Crystal structure of antibiotic GE82832 bound to 70S ribosome	X-RAY DIFFRACTION	3.1	76
79	4V9R\|1\|AX	Crystal structure of antibiotic DITYROMYCIN bound to 70S ribosome	X-RAY DIFFRACTION	3	76
80	4W2H\|1\|AX	Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site	X-RAY DIFFRACTION	2.7	72
81	4V6G\|1\|CC	Initiation complex of 70S ribosome with two tRNAs and mRNA.	X-RAY DIFFRACTION	3.5	77
82	4V8B\|1\|AC	Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).	X-RAY DIFFRACTION	3	77
83	4V87\|1\|BC	Crystal structure analysis of ribosomal decoding.	X-RAY DIFFRACTION	3.1	77
84	4V8C\|1\|CC	Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).	X-RAY DIFFRACTION	3.3	77
85	4V8C\|1\|DC	Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).	X-RAY DIFFRACTION	3.3	77
86	4V87\|1\|CC	Crystal structure analysis of ribosomal decoding.	X-RAY DIFFRACTION	3.1	77
87	4V8B\|1\|CC	Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).	X-RAY DIFFRACTION	3	77
88	4V6V\|1\|A3	Tetracycline resistance protein Tet(O) bound to the ribosome	ELECTRON MICROSCOPY	9.8	72
89	4V4Z\|1\|AC	70S Thermus thermophilous ribosome functional complex with mRNA and E- and P-site tRNAs at 4.5A.	X-RAY DIFFRACTION	4.51	76
90	4V4X\|1\|AC	Crystal structure of the 70S Thermus thermophilus ribosome showing how the 16S 3'-end mimicks mRNA E and P codons.	X-RAY DIFFRACTION	5	76
91	4V6O\|1\|AD	Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)	ELECTRON MICROSCOPY	14.7	72
92	4V6N\|1\|BD	Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)	ELECTRON MICROSCOPY	12.1	72
93	4V6S\|1\|BC	Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)	ELECTRON MICROSCOPY	13.1	72
94	4V77\|1\|A3	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post2b)	ELECTRON MICROSCOPY	17	72
95	4V74\|1\|A3	70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre5b)	ELECTRON MICROSCOPY	17	72
96	4V6P\|1\|AD	Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)	ELECTRON MICROSCOPY	13.5	72
97	4V72\|1\|A3	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre4)	ELECTRON MICROSCOPY	13	72
98	4V70\|1\|A3	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate pre-translocation state (pre3)	ELECTRON MICROSCOPY	17	72
99	4V6Y\|1\|A3	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1a)	ELECTRON MICROSCOPY	12	72
100	4V6G\|1\|CB	Initiation complex of 70S ribosome with two tRNAs and mRNA.	X-RAY DIFFRACTION	3.5	65
101	4V5F\|1\|CW	The structure of the ribosome with elongation factor G trapped in the post-translocational state	X-RAY DIFFRACTION	3.6	76
102	4V5F\|1\|AW	The structure of the ribosome with elongation factor G trapped in the post-translocational state	X-RAY DIFFRACTION	3.6	76
103	4V5K\|1\|CW	Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome	X-RAY DIFFRACTION	3.2	77
104	4V5K\|1\|AW	Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome	X-RAY DIFFRACTION	3.2	77
105	4V87\|1\|BD	Crystal structure analysis of ribosomal decoding.	X-RAY DIFFRACTION	3.1	77
106	4V8B\|1\|AD	Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).	X-RAY DIFFRACTION	3	77
107	4V8C\|1\|CD	Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).	X-RAY DIFFRACTION	3.3	77
108	4V8C\|1\|DD	Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).	X-RAY DIFFRACTION	3.3	77
109	4V8B\|1\|CD	Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex).	X-RAY DIFFRACTION	3	77
110	4V87\|1\|CD	Crystal structure analysis of ribosomal decoding.	X-RAY DIFFRACTION	3.1	77
111	4V6G\|1\|CD	Initiation complex of 70S ribosome with two tRNAs and mRNA.	X-RAY DIFFRACTION	3.5	77
112	4V67\|1\|AZ	Crystal structure of a translation termination complex formed with release factor RF2.	X-RAY DIFFRACTION	3	77
113	4V67\|1\|CZ	Crystal structure of a translation termination complex formed with release factor RF2.	X-RAY DIFFRACTION	3	77
114	4V63\|1\|AZ	Structural basis for translation termination on the 70S ribosome.	X-RAY DIFFRACTION	3.21	77
115	4V63\|1\|CZ	Structural basis for translation termination on the 70S ribosome.	X-RAY DIFFRACTION	3.21	77
116	4V8Q\|1\|BW	Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome	X-RAY DIFFRACTION	3.1	77
117	4V6G\|1\|AD	Initiation complex of 70S ribosome with two tRNAs and mRNA.	X-RAY DIFFRACTION	3.5	77
118	3J78\|1\|ET	Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs)	ELECTRON MICROSCOPY	6.3	77
119	3J77\|1\|PT	Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA)	ELECTRON MICROSCOPY	6.2	77
120	4V8O\|1\|AV	Crystal structure of the hybrid state of ribosome in complex with the guanosine triphosphatase release factor 3	X-RAY DIFFRACTION	3.8	77
121	4V6T\|1\|AX	Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loading	ELECTRON MICROSCOPY	8.3	77
122	4V78\|1\|A3	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3a)	ELECTRON MICROSCOPY	20	72
123	4V6Q\|1\|AD	Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)	ELECTRON MICROSCOPY	11.5	72
124	4V6R\|1\|AD	Structural characterization of mRNA-tRNA translocation intermediates (class 6 of the six classes)	ELECTRON MICROSCOPY	11.5	72
125	4V76\|1\|A3	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post2a)	ELECTRON MICROSCOPY	17	72
126	4V75\|1\|A3	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic post-translocation state (post1)	ELECTRON MICROSCOPY	12	72
127	4V73\|1\|A3	E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre5a)	ELECTRON MICROSCOPY	15	72
128	3V11\|1\|D	Structure of the ternary initiation complex AIF2:GDPNP:methionylated initiator TRNA	X-RAY DIFFRACTION	5	71
129	3CW6\|1\|A	E. coli Initiator tRNA	X-RAY DIFFRACTION	3.3	72
130	3CW5\|1\|A	E. coli Initiator tRNA	X-RAY DIFFRACTION	3.1	72
131	2FMT\|1\|D	METHIONYL-TRNAFMET FORMYLTRANSFERASE COMPLEXED WITH FORMYL-METHIONYL-TRNAFMET	X-RAY DIFFRACTION	2.8	72
132	2FMT\|1\|C	METHIONYL-TRNAFMET FORMYLTRANSFERASE COMPLEXED WITH FORMYL-METHIONYL-TRNAFMET	X-RAY DIFFRACTION	2.8	72
133	3QSY\|1\|D	Recognition of the methionylated initiator tRNA by the translation initiation factor 2 in Archaea	X-RAY DIFFRACTION	3.2	77
134	1EG0\|1\|O	FITTING OF COMPONENTS WITH KNOWN STRUCTURE INTO AN 11.5 A CRYO-EM MAP OF THE E.COLI 70S RIBOSOME	ELECTRON MICROSCOPY	11.5	71

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.

Coloring options: Nucleotide numbers

Equivalence class NR_20.0_35542.1 Obsolete

Release history

Parents

Children