Equivalence class NR_20.0_35542.2 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4P70|1|XV (rep) | Transfer RNA | A site ASL of tRNA-Proline CGG (unmodified), mRNA, P-site tRNA fMET | Escherichia coli | Bacteria | RF00005 | Crystal Structure of Unmodified tRNA Proline (CGG) Bound to Codon CCG on the Ribosome | X-ray diffraction | 3.68 | 2014-08-13 |
| 2 | 4V9R|1|AX | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of antibiotic DITYROMYCIN bound to 70S ribosome | X-ray diffraction | 3 | 2014-07-09 |
| 3 | 4V9S|1|AX | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of antibiotic GE82832 bound to 70S ribosome | X-ray diffraction | 3.1 | 2014-07-09 |
| 4 | 4V7B|1|AV | Transfer RNA | messenger RNA, modified formyl-methionine specific initiator transfer RNA | Escherichia coli | Bacteria | RF00005 | Visualization of two tRNAs trapped in transit during EF-G-mediated translocation | Electron microscopy | 6.8 | 2014-07-09 |
| 5 | 4V5F|1|AV | Transfer RNA | E-SITE TRNA FMET OR P-SITE TRNA FMET (UNMODIFIED BASES EXCEPT FOR THYMINE 54), MRNA | Escherichia coli | Bacteria | RF00005 | The structure of the ribosome with elongation factor G trapped in the post-translocational state | X-ray diffraction | 3.6 | 2014-07-09 |
| 6 | 4V9S|1|CX | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of antibiotic GE82832 bound to 70S ribosome | X-ray diffraction | 3.1 | 2014-07-09 |
| 7 | 4V9R|1|CX | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of antibiotic DITYROMYCIN bound to 70S ribosome | X-ray diffraction | 3 | 2014-07-09 |
| 8 | 4V7M|1|AX | Transfer RNA | RNA (5'-R(*AP*AP*AP*AP*AP*GP*GP*AP*AP*AP*UP*A*AP*AP*AP*AP*UP*GP*CP*AP*GP*UP*UP*CP*AP*AP*UP*CP*UP*A)-3'), tRNA-Met | Escherichia coli | Bacteria | RF00005 | The structures of Capreomycin bound to the 70S ribosome. | X-ray diffraction | 3.45 | 2014-07-09 |
| 9 | 4V67|1|AY | Transfer RNA | MRNA, P AND E-SITE TRNA(FMET) | Escherichia coli | Bacteria | RF00005 | Crystal structure of a translation termination complex formed with release factor RF2. | X-ray diffraction | 3 | 2014-07-09 |
| 10 | 4V63|1|AY | Transfer RNA | mRNA, P and E-site tRNA(fMet) | Escherichia coli | Bacteria | RF00005 | Structural basis for translation termination on the 70S ribosome. | X-ray diffraction | 3.21 | 2014-07-09 |
| 11 | 4V87|1|BC | Transfer RNA | MRNA, TRNA-FMET | Escherichia coli | Bacteria | RF00005 | Crystal structure analysis of ribosomal decoding. | X-ray diffraction | 3.1 | 2014-07-09 |
| 12 | 4V8F|1|CC | Transfer RNA | MRNA, TRNA-FMET | Escherichia coli | Bacteria | RF00005 | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin). | X-ray diffraction | 3.3 | 2014-07-09 |
| 13 | 4V9I|1|CV | Transfer RNA | mRNA, P-SITE tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon | X-ray diffraction | 3.3 | 2014-07-09 |
| 14 | 4V6A|1|CW | Transfer RNA | RNA (5'-R(P*AP*AP*AP*UP*G)-3'), tRNA-Met | Escherichia coli | Bacteria | RF00005 | Structure of EF-P bound to the 70S ribosome. | X-ray diffraction | 3.1 | 2014-07-09 |
| 15 | 4V63|1|CY | Transfer RNA | mRNA, P and E-site tRNA(fMet) | Escherichia coli | Bacteria | RF00005 | Structural basis for translation termination on the 70S ribosome. | X-ray diffraction | 3.21 | 2014-07-09 |
| 16 | 4V67|1|CY | Transfer RNA | MRNA, P AND E-SITE TRNA(FMET) | Escherichia coli | Bacteria | RF00005 | Crystal structure of a translation termination complex formed with release factor RF2. | X-ray diffraction | 3 | 2014-07-09 |
| 17 | 4V8C|1|DC | Transfer RNA | MRNA, TRNA-FMET | Escherichia coli | Bacteria | RF00005 | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin). | X-ray diffraction | 3.3 | 2014-07-09 |
| 18 | 4V5F|1|CV | Transfer RNA | E-SITE TRNA FMET OR P-SITE TRNA FMET (UNMODIFIED BASES EXCEPT FOR THYMINE 54), MRNA | Escherichia coli | Bacteria | RF00005 | The structure of the ribosome with elongation factor G trapped in the post-translocational state | X-ray diffraction | 3.6 | 2014-07-09 |
| 19 | 4V8B|1|AC | Transfer RNA | MRNA, TRNA-FMET | Escherichia coli | Bacteria | RF00005 | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex). | X-ray diffraction | 3 | 2014-07-09 |
| 20 | 4V63|1|AZ | Transfer RNA | P and E-site tRNA(fMet) | Escherichia coli | Bacteria | RF00005 | Structural basis for translation termination on the 70S ribosome. | X-ray diffraction | 3.21 | 2014-07-09 |
| 21 | 4V67|1|AZ | Transfer RNA | P AND E-SITE TRNA(FMET) | Escherichia coli | Bacteria | RF00005 | Crystal structure of a translation termination complex formed with release factor RF2. | X-ray diffraction | 3 | 2014-07-09 |
| 22 | 4V8E|1|BC | Transfer RNA | MRNA, TRNA-FMET | Escherichia coli | Bacteria | RF00005 | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex). | X-ray diffraction | 3.3 | 2014-07-09 |
| 23 | 4V8Q|1|BV | Transfer RNA | E-SITE or P-SITE TRNA FMET, MRNA | Escherichia coli | Bacteria | RF00005 | Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome | X-ray diffraction | 3.1 | 2014-07-09 |
| 24 | 4V8B|1|CC | Transfer RNA | MRNA, TRNA-FMET | Escherichia coli | Bacteria | RF00005 | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex). | X-ray diffraction | 3 | 2014-07-09 |
| 25 | 4V6G|1|CC | Transfer RNA | MRNA, TRNA FMET (UNMODIFIED BASES) | Escherichia coli | Bacteria | RF00005 | Initiation complex of 70S ribosome with two tRNAs and mRNA. | X-ray diffraction | 3.5 | 2014-07-09 |
| 26 | 4V8C|1|CC | Transfer RNA | MRNA, TRNA-FMET | Escherichia coli | Bacteria | RF00005 | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin). | X-ray diffraction | 3.3 | 2014-07-09 |
| 27 | 4V8J|1|CV | Transfer RNA | messenger RNA, tRNA-fMet, tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Crystal structure of the bacterial ribosome ram mutation G347U. | X-ray diffraction | 3.9 | 2014-07-09 |
| 28 | 4V63|1|CZ | Transfer RNA | P and E-site tRNA(fMet) | Escherichia coli | Bacteria | RF00005 | Structural basis for translation termination on the 70S ribosome. | X-ray diffraction | 3.21 | 2014-07-09 |
| 29 | 4V67|1|CZ | Transfer RNA | P AND E-SITE TRNA(FMET) | Escherichia coli | Bacteria | RF00005 | Crystal structure of a translation termination complex formed with release factor RF2. | X-ray diffraction | 3 | 2014-07-09 |
| 30 | 4V8E|1|DC | Transfer RNA | MRNA, TRNA-FMET | Escherichia coli | Bacteria | RF00005 | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex). | X-ray diffraction | 3.3 | 2014-07-09 |
| 31 | 4P70|1|QV | Transfer RNA | A site ASL of tRNA-Proline CGG (unmodified), mRNA, P-site tRNA fMET | Escherichia coli | Bacteria | RF00005 | Crystal Structure of Unmodified tRNA Proline (CGG) Bound to Codon CCG on the Ribosome | X-ray diffraction | 3.68 | 2014-08-13 |
| 32 | 4LT8|1|QV | Transfer RNA | A-site ASL Pro, messenger RNA, P-site tRNA fMet | Escherichia coli | Bacteria | RF00005 | Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-G on the Ribosome | X-ray diffraction | 3.14 | 2014-08-06 |
| 33 | 4P6F|1|XV | Transfer RNA | E-Site tRNA-Phe or A-Site tRNA-Phe, mRNA, tRNA-fMet | Escherichia coli | Bacteria | RF00005 | Crystal structure of the peptolide 12C bound to bacterial ribosome | X-ray diffraction | 3.6 | 2014-10-01 |
| 34 | 4LT8|1|XV | Transfer RNA | A-site ASL Pro, messenger RNA, P-site tRNA fMet | Escherichia coli | Bacteria | RF00005 | Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-G on the Ribosome | X-ray diffraction | 3.14 | 2014-08-06 |
| 35 | 4LNT|1|XV | Transfer RNA | A-site ASL SufA6, messenger RNA, P-site tRNA fMet | Escherichia coli | Bacteria | RF00005 | Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the Ribosome | X-ray diffraction | 2.94 | 2014-08-06 |
| 36 | 3CW5|1|A | Transfer RNA | Initiator tRNA | Escherichia coli | Bacteria | RF00005 | E. coli Initiator tRNA | X-ray diffraction | 3.1 | 2008-09-02 |
| 37 | 4W2G|1|AX | Transfer RNA | E-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.55 | 2014-10-15 |
| 38 | 4W2F|1|AX | Transfer RNA | E-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.4 | 2014-10-15 |
| 39 | 4W2H|1|AX | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site | X-ray diffraction | 2.7 | 2014-10-15 |
| 40 | 4W2I|1|AX | Transfer RNA | E-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.7 | 2014-10-15 |
| 41 | 1VY5|1|AX | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site. | X-ray diffraction | 2.55 | 2014-08-20 |
| 42 | 4W2I|1|CX | Transfer RNA | E-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.7 | 2014-10-15 |
| 43 | 1VY5|1|CX | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site. | X-ray diffraction | 2.55 | 2014-08-20 |
| 44 | 4W2F|1|CX | Transfer RNA | E-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.4 | 2014-10-15 |
| 45 | 4W2G|1|CX | Transfer RNA | E-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.55 | 2014-10-15 |
| 46 | 4V4Z|1|AC | Transfer RNA | mRNA, tRNA fMET (unmodified bases) | Escherichia coli | Bacteria | RF00005 | 70S Thermus thermophilous ribosome functional complex with mRNA and E- and P-site tRNAs at 4.5A. | X-ray diffraction | 4.51 | 2014-07-09 |
| 47 | 4V5C|1|AV | Transfer RNA | MRNA, P-SITE TRNA FMET | Escherichia coli | Bacteria | RF00005 | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA. | X-ray diffraction | 3.3 | 2014-07-09 |
| 48 | 1VY7|1|AX | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site. | X-ray diffraction | 2.8 | 2014-08-20 |
| 49 | 1VY6|1|AX | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site. | X-ray diffraction | 2.9 | 2014-08-20 |
| 50 | 1VY4|1|AX | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites. | X-ray diffraction | 2.6 | 2014-08-20 |
| 51 | 1VY6|1|CX | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site. | X-ray diffraction | 2.9 | 2014-08-20 |
| 52 | 4WPO|1|DX | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state | X-ray diffraction | 2.8 | 2015-01-28 |
| 53 | 4V8D|1|AC | Transfer RNA | MRNA, TRNA-FMET | Escherichia coli | Bacteria | RF00005 | Structure analysis of ribosomal decoding (cognate tRNA-tyr complex). | X-ray diffraction | 3 | 2014-07-09 |
| 54 | 4V9I|1|AV | Transfer RNA | mRNA, P-SITE tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon | X-ray diffraction | 3.3 | 2014-07-09 |
| 55 | 4V6A|1|AW | Transfer RNA | RNA (5'-R(P*AP*AP*AP*UP*G)-3'), tRNA-Met | Escherichia coli | Bacteria | RF00005 | Structure of EF-P bound to the 70S ribosome. | X-ray diffraction | 3.1 | 2014-07-09 |
| 56 | 4V87|1|CC | Transfer RNA | MRNA, TRNA-FMET | Escherichia coli | Bacteria | RF00005 | Crystal structure analysis of ribosomal decoding. | X-ray diffraction | 3.1 | 2014-07-09 |
| 57 | 4V7M|1|CX | Transfer RNA | RNA (5'-R(*AP*AP*AP*AP*AP*GP*GP*AP*AP*AP*UP*A*AP*AP*AP*AP*UP*GP*CP*AP*GP*UP*UP*CP*AP*AP*UP*CP*UP*A)-3'), RNA (77-MER) | Escherichia coli | Bacteria | RF00005 | The structures of Capreomycin bound to the 70S ribosome. | X-ray diffraction | 3.45 | 2014-07-09 |
| 58 | 3J5S|1|E | Transfer RNA | P-site tRNA FMet | Escherichia coli | Bacteria | RF00005 | EttA binds to ribosome exit site and regulates translation by restricting ribosome and tRNA dynamics | Electron microscopy | 7.5 | 2014-01-08 |
| 59 | 3J78|1|ET | Transfer RNA | P/E-site initiator transfer RNAfMet | Escherichia coli | Bacteria | RF00005 | Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs) | Electron microscopy | 6.3 | 2014-08-06 |
| 60 | 3J77|1|PT | Transfer RNA | messenger RNA, P/E-site initiator transfer RNAfMet | Escherichia coli | Bacteria | RF00005 | Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA) | Electron microscopy | 6.2 | 2014-08-06 |
| 61 | 4LNT|1|QV | Transfer RNA | A-site ASL SufA6, messenger RNA, P-site tRNA fMet | Escherichia coli | Bacteria | RF00005 | Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the Ribosome | X-ray diffraction | 2.94 | 2014-08-06 |
| 62 | 4P6F|1|QV | Transfer RNA | E-Site tRNA-Phe or A-Site tRNA-Phe, mRNA, tRNA-fMet | Escherichia coli | Bacteria | RF00005 | Crystal structure of the peptolide 12C bound to bacterial ribosome | X-ray diffraction | 3.6 | 2014-10-01 |
| 63 | 3CW6|1|A | Transfer RNA | Initiator tRNA | Escherichia coli | Bacteria | RF00005 | E. coli Initiator tRNA | X-ray diffraction | 3.3 | 2008-09-02 |
| 64 | 4V6Y|1|A3 | Transfer RNA | 5'-R(*AP*CP*UP*AP*UP*GP*GP*UP*UP*UP*UP*UP*AP*UP*U)-3', tRNA-fMet | Escherichia coli | Bacteria | RF00005 | E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1a) | Electron microscopy | 12 | 2014-07-09 |
| 65 | 4V73|1|A3 | Transfer RNA | 5'-R(*AP*CP*UP*AP*UP*GP*GP*UP*UP*UP*UP*UP*AP*UP*U)-3', tRNA-fMet | Escherichia coli | Bacteria | RF00005 | E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre5a) | Electron microscopy | 15 | 2014-07-09 |
| 66 | 4V6R|1|AD | Transfer RNA | mRNA, P site tRNA | Escherichia coli | Bacteria | RF00005 | Structural characterization of mRNA-tRNA translocation intermediates (class 6 of the six classes) | Electron microscopy | 11.5 | 2014-07-09 |
| 67 | 4WQY|1|BX | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid) | X-ray diffraction | 2.8 | 2015-01-28 |
| 68 | 4V8D|1|CC | Transfer RNA | MRNA, TRNA-FMET | Escherichia coli | Bacteria | RF00005 | Structure analysis of ribosomal decoding (cognate tRNA-tyr complex). | X-ray diffraction | 3 | 2014-07-09 |
| 69 | 4V97|1|CV | Transfer RNA | E-SITE TRNA PHE OR A-SITE tRNA Phe, mRNA, P-SITE tRNA fMet | Escherichia coli | Bacteria | RF00005 | Crystal structure of the bacterial ribosome ram mutation G299A. | X-ray diffraction | 3.52 | 2014-07-09 |
| 70 | 3J78|1|PT | Transfer RNA | messenger RNA, P/E-site initiator transfer RNAfMet | Escherichia coli | Bacteria | RF00005 | Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs) | Electron microscopy | 6.3 | 2014-08-06 |
| 71 | 1VVJ|1|QV | Transfer RNA | A-site ASL SufA6, messenger RNA, P-site tRNA fMet | Escherichia coli | Bacteria | RF00005 | Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome | X-ray diffraction | 3.44 | 2014-08-06 |
| 72 | 4LSK|1|QV | Transfer RNA | A-site ASL SufA6, messenger RNA, P-site tRNA fMet | Escherichia coli | Bacteria | RF00005 | Crystal Structure of tRNA Proline (CGG) Bound to Codon CCG-G on the Ribosome | X-ray diffraction | 3.48 | 2014-08-06 |
| 73 | 4L71|1|QV | Transfer RNA | A-site ASL SufA6, messenger RNA, P-site tRNA fMet | Escherichia coli | Bacteria | RF00005 | Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-A on the Ribosome | X-ray diffraction | 3.9 | 2014-08-06 |
| 74 | 4LFZ|1|QV | Transfer RNA | A-site ASL SufA6, messenger RNA, P-site tRNA fMet | Escherichia coli | Bacteria | RF00005 | Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U in the Absence of Paromomycin | X-ray diffraction | 3.92 | 2014-08-06 |
| 75 | 4LEL|1|QV | Transfer RNA | A-site ASL SufA6, messenger RNA, P-site tRNA fMet | Escherichia coli | Bacteria | RF00005 | Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCG-G on the Ribosome | X-ray diffraction | 3.9 | 2014-08-06 |
| 76 | 4LFZ|1|XV | Transfer RNA | A-site ASL SufA6, messenger RNA, P-site tRNA fMet | Escherichia coli | Bacteria | RF00005 | Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U in the Absence of Paromomycin | X-ray diffraction | 3.92 | 2014-08-06 |
| 77 | 4L71|1|XV | Transfer RNA | A-site ASL SufA6, messenger RNA, P-site tRNA fMet | Escherichia coli | Bacteria | RF00005 | Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-A on the Ribosome | X-ray diffraction | 3.9 | 2014-08-06 |
| 78 | 4LEL|1|XV | Transfer RNA | A-site ASL SufA6, messenger RNA, P-site tRNA fMet | Escherichia coli | Bacteria | RF00005 | Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCG-G on the Ribosome | X-ray diffraction | 3.9 | 2014-08-06 |
| 79 | 1VVJ|1|XV | Transfer RNA | A-site ASL SufA6, messenger RNA, P-site tRNA fMet | Escherichia coli | Bacteria | RF00005 | Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome | X-ray diffraction | 3.44 | 2014-08-06 |
| 80 | 4LSK|1|XV | Transfer RNA | A-site ASL SufA6, messenger RNA, P-site tRNA fMet | Escherichia coli | Bacteria | RF00005 | Crystal Structure of tRNA Proline (CGG) Bound to Codon CCG-G on the Ribosome | X-ray diffraction | 3.48 | 2014-08-06 |
| 81 | 4WPO|1|BX | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state | X-ray diffraction | 2.8 | 2015-01-28 |
| 82 | 4V6G|1|CB | Transfer RNA | MRNA, TRNA FMET (UNMODIFIED BASES) | Escherichia coli | Bacteria | RF00005 | Initiation complex of 70S ribosome with two tRNAs and mRNA. | X-ray diffraction | 3.5 | 2014-07-09 |
| 83 | 4V6Z|1|A3 | Transfer RNA | 5'-R(*AP*CP*UP*AP*UP*GP*GP*UP*UP*UP*UP*UP*AP*UP*U)-3', tRNA-fMet | Escherichia coli | Bacteria | RF00005 | E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1b) | Electron microscopy | 12 | 2014-07-09 |
| 84 | 4V6P|1|AD | Transfer RNA | mRNA, P site tRNA | Escherichia coli | Bacteria | RF00005 | Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes) | Electron microscopy | 13.5 | 2014-07-09 |
| 85 | 4V6O|1|AD | Transfer RNA | mRNA, P site tRNA | Escherichia coli | Bacteria | RF00005 | Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes) | Electron microscopy | 14.7 | 2014-07-09 |
| 86 | 4W2H|1|CX | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site | X-ray diffraction | 2.7 | 2014-10-15 |
| 87 | 4WQY|1|DX | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid) | X-ray diffraction | 2.8 | 2015-01-28 |
| 88 | 4V69|1|AV | Transfer RNA | E-site tRNA Phe, mRNA | Escherichia coli | Bacteria | RF00005 | Ternary complex-bound E.coli 70S ribosome. | Electron microscopy | 6.7 | 2014-07-09 |
| 89 | 4V51|1|AV | Transfer RNA | E-SITE TRNA PHE OR A-SITE TRNA PHE (UNMODIFIED BASES), MRNA, P-SITE TRNA FMET (UNMODIFIED BASES EXCEPT FOR THYMINE 54) | Escherichia coli | Bacteria | RF00005 | Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin | X-ray diffraction | 2.8 | 2014-07-09 |
| 90 | 3DEG|1|B | Transfer RNA | P-tRNA | Escherichia coli | Bacteria | RF00005 | Complex of elongating Escherichia coli 70S ribosome and EF4(LepA)-GMPPNP | Electron microscopy | 10.9 | 2008-08-19 |
| 91 | 4V51|1|CV | Transfer RNA | E-SITE TRNA PHE OR A-SITE TRNA PHE (UNMODIFIED BASES), MRNA, P-SITE TRNA FMET (UNMODIFIED BASES EXCEPT FOR THYMINE 54) | Escherichia coli | Bacteria | RF00005 | Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin | X-ray diffraction | 2.8 | 2014-07-09 |
| 92 | 4V5F|1|CW | Transfer RNA | E-SITE TRNA FMET OR P-SITE TRNA FMET (UNMODIFIED BASES EXCEPT FOR THYMINE 54) | Escherichia coli | Bacteria | RF00005 | The structure of the ribosome with elongation factor G trapped in the post-translocational state | X-ray diffraction | 3.6 | 2014-07-09 |
| 93 | 4V6G|1|AC | Transfer RNA | MRNA, TRNA FMET (UNMODIFIED BASES) | Escherichia coli | Bacteria | RF00005 | Initiation complex of 70S ribosome with two tRNAs and mRNA. | X-ray diffraction | 3.5 | 2014-07-09 |
| 94 | 4V5K|1|AV | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE, MRNA | Escherichia coli | Bacteria | RF00005 | Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome | X-ray diffraction | 3.2 | 2014-07-09 |
| 95 | 4V97|1|AV | Transfer RNA | E-SITE TRNA PHE OR A-SITE tRNA Phe, mRNA, P-SITE tRNA fMet | Escherichia coli | Bacteria | RF00005 | Crystal structure of the bacterial ribosome ram mutation G299A. | X-ray diffraction | 3.52 | 2014-07-09 |
| 96 | 4V7P|1|AW | Transfer RNA | messenger RNA (5'-R(*AP*AP*UP*GP*UP*AP*G)-3'), P-site tRNA-fMet | Escherichia coli | Bacteria | RF00005 | Recognition of the amber stop codon by release factor RF1. | X-ray diffraction | 3.62 | 2014-07-09 |
| 97 | 4V7L|1|AX | Transfer RNA | RNA (5'-R(*AP*AP*AP*AP*AP*GP*GP*AP*AP*AP*UP*A*AP*AP*AP*AP*UP*GP*CP*AP*GP*UP*UP*CP*AP*AP*UP*CP*UP*A)-3'), tRNA-Met | Escherichia coli | Bacteria | RF00005 | The structures of viomycin bound to the 70S ribosome. | X-ray diffraction | 3 | 2014-07-09 |
| 98 | 4V7P|1|DW | Transfer RNA | messenger RNA (5'-R(*AP*AP*UP*GP*UP*AP*G)-3'), P-site tRNA-fMet | Escherichia coli | Bacteria | RF00005 | Recognition of the amber stop codon by release factor RF1. | X-ray diffraction | 3.62 | 2014-07-09 |
| 99 | 1VY7|1|CX | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site. | X-ray diffraction | 2.8 | 2014-08-20 |
| 100 | 1VY4|1|CX | Transfer RNA | mRNA, P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites. | X-ray diffraction | 2.6 | 2014-08-20 |
| 101 | 4V6V|1|A3 | Transfer RNA | mRNA, P-tRNA | Escherichia coli | Bacteria | RF00005 | Tetracycline resistance protein Tet(O) bound to the ribosome | Electron microscopy | 9.8 | 2014-07-09 |
| 102 | 4V74|1|A3 | Transfer RNA | 5'-R(*AP*CP*UP*AP*UP*GP*GP*UP*UP*UP*UP*UP*AP*UP*U)-3', tRNA-fMet | Escherichia coli | Bacteria | RF00005 | 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre5b) | Electron microscopy | 17 | 2014-07-09 |
| 103 | 4V72|1|A3 | Transfer RNA | 5'-R(*AP*CP*UP*AP*UP*GP*GP*UP*UP*UP*UP*UP*AP*UP*U)-3', tRNA-fMet | Escherichia coli | Bacteria | RF00005 | E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre4) | Electron microscopy | 13 | 2014-07-09 |
| 104 | 4V71|1|A3 | Transfer RNA | 5'-R(*AP*CP*UP*AP*UP*GP*GP*UP*UP*UP*UP*UP*AP*UP*U)-3', tRNA-fMet | Escherichia coli | Bacteria | RF00005 | E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate pre-translocation state (pre2) | Electron microscopy | 20 | 2014-07-09 |
| 105 | 4V70|1|A3 | Transfer RNA | tRNA-fMet | Escherichia coli | Bacteria | RF00005 | E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate pre-translocation state (pre3) | Electron microscopy | 17 | 2014-07-09 |
| 106 | 4V6Q|1|AD | Transfer RNA | mRNA, P site tRNA | Escherichia coli | Bacteria | RF00005 | Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes) | Electron microscopy | 11.5 | 2014-07-09 |
| 107 | 4V6S|1|BC | Transfer RNA | mRNA, P site tRNA | Escherichia coli | Bacteria | RF00005 | Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes) | Electron microscopy | 13.1 | 2014-07-09 |
| 108 | 2FMT|1|C | FORMYL-METHIONYL-TRNAFMET2 | synthetic construct | METHIONYL-TRNAFMET FORMYLTRANSFERASE COMPLEXED WITH FORMYL-METHIONYL-TRNAFMET | X-ray diffraction | 2.8 | 1999-07-29 | |||
| 109 | 2FMT|1|D | FORMYL-METHIONYL-TRNAFMET2 | synthetic construct | METHIONYL-TRNAFMET FORMYLTRANSFERASE COMPLEXED WITH FORMYL-METHIONYL-TRNAFMET | X-ray diffraction | 2.8 | 1999-07-29 | |||
| 110 | 4V5C|1|CV | Transfer RNA | MRNA, P-SITE TRNA FMET | Escherichia coli | Bacteria | RF00005 | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA. | X-ray diffraction | 3.3 | 2014-07-09 |
| 111 | 4V8F|1|BC | Transfer RNA | MRNA, TRNA-FMET | Escherichia coli | Bacteria | RF00005 | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin). | X-ray diffraction | 3.3 | 2014-07-09 |
| 112 | 4V6G|1|CD | Transfer RNA | TRNA FMET (UNMODIFIED BASES) | Escherichia coli | Bacteria | RF00005 | Initiation complex of 70S ribosome with two tRNAs and mRNA. | X-ray diffraction | 3.5 | 2014-07-09 |
| 113 | 4V78|1|A3 | Transfer RNA | tRNA-fMet | Escherichia coli | Bacteria | RF00005 | E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3a) | Electron microscopy | 20 | 2014-07-09 |
| 114 | 4V79|1|A3 | Transfer RNA | tRNA-fMet | Escherichia coli | Bacteria | RF00005 | E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3b) | Electron microscopy | 15 | 2014-07-09 |
| 115 | 4V77|1|A3 | Transfer RNA | tRNA-fMet | Escherichia coli | Bacteria | RF00005 | E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post2b) | Electron microscopy | 17 | 2014-07-09 |
| 116 | 4V4X|1|AC | Transfer RNA | tRNA fMET (unmodified bases) | Escherichia coli | Bacteria | RF00005 | Crystal structure of the 70S Thermus thermophilus ribosome showing how the 16S 3'-end mimicks mRNA E and P codons. | X-ray diffraction | 5 | 2014-07-09 |
| 117 | 4V8J|1|AV | Transfer RNA | messenger RNA, tRNA-fMet, tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Crystal structure of the bacterial ribosome ram mutation G347U. | X-ray diffraction | 3.9 | 2014-07-09 |
| 118 | 4V5K|1|CV | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE | Escherichia coli | Bacteria | RF00005 | Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome | X-ray diffraction | 3.2 | 2014-07-09 |
| 119 | 3V11|1|D | Transfer RNA | Initiator tRNA | Escherichia coli | Bacteria | RF00005 | Structure of the ternary initiation complex AIF2:GDPNP:methionylated initiator TRNA | X-ray diffraction | 5 | 2012-03-28 |
| 120 | 4V75|1|A3 | Transfer RNA | tRNA-fMet | Escherichia coli | Bacteria | RF00005 | E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic post-translocation state (post1) | Electron microscopy | 12 | 2014-07-09 |
| 121 | 4V76|1|A3 | Transfer RNA | tRNA-fMet | Escherichia coli | Bacteria | RF00005 | E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post2a) | Electron microscopy | 17 | 2014-07-09 |
| 122 | 4V6G|1|AD | Transfer RNA | TRNA FMET (UNMODIFIED BASES) | Escherichia coli | Bacteria | RF00005 | Initiation complex of 70S ribosome with two tRNAs and mRNA. | X-ray diffraction | 3.5 | 2014-07-09 |
| 123 | 4V7L|1|CX | Transfer RNA | RNA (5'-R(*AP*AP*AP*AP*AP*GP*GP*AP*AP*AP*UP*A*AP*AP*AP*AP*UP*GP*CP*AP*GP*UP*UP*CP*AP*AP*UP*CP*UP*A)-3'), tRNA-Met | Escherichia coli | Bacteria | RF00005 | The structures of viomycin bound to the 70S ribosome. | X-ray diffraction | 3 | 2014-07-09 |
| 124 | 4V6N|1|BD | Transfer RNA | mRNA, P site tRNA | Escherichia coli | Bacteria | RF00005 | Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes) | Electron microscopy | 12.1 | 2014-07-09 |
| 125 | 4V5F|1|AW | Transfer RNA | E-SITE TRNA FMET OR P-SITE TRNA FMET (UNMODIFIED BASES EXCEPT FOR THYMINE 54) | Escherichia coli | Bacteria | RF00005 | The structure of the ribosome with elongation factor G trapped in the post-translocational state | X-ray diffraction | 3.6 | 2014-07-09 |
| 126 | 4V8Q|1|BW | Transfer RNA | E-SITE or P-SITE TRNA FMET | Escherichia coli | Bacteria | RF00005 | Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome | X-ray diffraction | 3.1 | 2014-07-09 |
| 127 | 4V8O|1|AV | Transfer RNA | MRNA 5'-R(*AP*AP*AP*AP*AP*AP*UP*GP*UP)-3', PE HYBRID STATE TRNA FMET | Escherichia coli | Bacteria | RF00005 | Crystal structure of the hybrid state of ribosome in complex with the guanosine triphosphatase release factor 3 | X-ray diffraction | 3.8 | 2014-07-09 |
| 128 | 4V6T|1|AX | Transfer RNA | formyl-methionine specific initiator transfer RNA | Escherichia coli | Bacteria | RF00005 | Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loading | Electron microscopy | 8.3 | 2014-07-09 |
| 129 | 4V8C|1|CD | Transfer RNA | TRNA-FMET | Escherichia coli | Bacteria | RF00005 | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin). | X-ray diffraction | 3.3 | 2014-07-09 |
| 130 | 4V8B|1|AD | Transfer RNA | TRNA-FMET | Escherichia coli | Bacteria | RF00005 | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex). | X-ray diffraction | 3 | 2014-07-09 |
| 131 | 4V87|1|CD | Transfer RNA | TRNA-FMET | Escherichia coli | Bacteria | RF00005 | Crystal structure analysis of ribosomal decoding. | X-ray diffraction | 3.1 | 2014-07-09 |
| 132 | 4V8C|1|DD | Transfer RNA | TRNA-FMET | Escherichia coli | Bacteria | RF00005 | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin). | X-ray diffraction | 3.3 | 2014-07-09 |
| 133 | 4V87|1|BD | Transfer RNA | TRNA-FMET | Escherichia coli | Bacteria | RF00005 | Crystal structure analysis of ribosomal decoding. | X-ray diffraction | 3.1 | 2014-07-09 |
| 134 | 4V8B|1|CD | Transfer RNA | TRNA-FMET | Escherichia coli | Bacteria | RF00005 | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex). | X-ray diffraction | 3 | 2014-07-09 |
| 135 | 3QSY|1|D | Transfer RNA | tRNA | Escherichia coli | Bacteria | RF00005 | Recognition of the methionylated initiator tRNA by the translation initiation factor 2 in Archaea | X-ray diffraction | 3.2 | 2012-03-21 |
| 136 | 4V5K|1|AW | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE | Escherichia coli | Bacteria | RF00005 | Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome | X-ray diffraction | 3.2 | 2014-07-09 |
| 137 | 4V5K|1|CW | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE | Escherichia coli | Bacteria | RF00005 | Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome | X-ray diffraction | 3.2 | 2014-07-09 |
| 138 | 1EG0|1|O | Transfer RNA | FORMYL-METHIONYL-TRNA | Escherichia coli | Bacteria | RF00005 | FITTING OF COMPONENTS WITH KNOWN STRUCTURE INTO AN 11.5 A CRYO-EM MAP OF THE E.COLI 70S RIBOSOME | Electron microscopy | 11.5 | 2000-03-06 |
Release history
Parents
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
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Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 4V79|1|A3 | E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3b) | ELECTRON MICROSCOPY | 15 | 72 | |
| 2 | 4V6P|1|AD | Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes) | ELECTRON MICROSCOPY | 13.5 | 77 | |
| 3 | 4V74|1|A3 | 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre5b) | ELECTRON MICROSCOPY | 17 | 72 | |
| 4 | 4V75|1|A3 | E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic post-translocation state (post1) | ELECTRON MICROSCOPY | 12 | 72 | |
| 5 | 4V76|1|A3 | E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post2a) | ELECTRON MICROSCOPY | 17 | 72 | |
| 6 | 4V73|1|A3 | E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre5a) | ELECTRON MICROSCOPY | 15 | 72 | |
| 7 | 4V78|1|A3 | E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3a) | ELECTRON MICROSCOPY | 20 | 72 | |
| 8 | 4V6Q|1|AD | Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes) | ELECTRON MICROSCOPY | 11.5 | 77 | |
| 9 | 4V6R|1|AD | Structural characterization of mRNA-tRNA translocation intermediates (class 6 of the six classes) | ELECTRON MICROSCOPY | 11.5 | 77 | |
| 10 | 4V6O|1|AD | Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes) | ELECTRON MICROSCOPY | 14.7 | 77 | |
| 11 | 4V6N|1|BD | Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes) | ELECTRON MICROSCOPY | 12.1 | 72 | |
| 12 | 4V6S|1|BC | Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes) | ELECTRON MICROSCOPY | 13.1 | 72 | |
| 13 | 4V6V|1|A3 | Tetracycline resistance protein Tet(O) bound to the ribosome | ELECTRON MICROSCOPY | 9.8 | 72 | |
| 14 | 4V4Z|1|AC | 70S Thermus thermophilous ribosome functional complex with mRNA and E- and P-site tRNAs at 4.5A. | X-RAY DIFFRACTION | 4.51 | 76 | |
| 15 | 4V4X|1|AC | Crystal structure of the 70S Thermus thermophilus ribosome showing how the 16S 3'-end mimicks mRNA E and P codons. | X-RAY DIFFRACTION | 5 | 76 | |
| 16 | 4V71|1|A3 | E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate pre-translocation state (pre2) | ELECTRON MICROSCOPY | 20 | 72 | |
| 17 | 1VY7|1|CX | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site. | X-RAY DIFFRACTION | 2.8 | 71 | |
| 18 | 4V7L|1|CX | The structures of viomycin bound to the 70S ribosome. | X-RAY DIFFRACTION | 3 | 77 | |
| 19 | 4V7L|1|AX | The structures of viomycin bound to the 70S ribosome. | X-RAY DIFFRACTION | 3 | 77 | |
| 20 | 4V7M|1|AX | The structures of Capreomycin bound to the 70S ribosome. | X-RAY DIFFRACTION | 3.45 | 77 | |
| 21 | 4V7M|1|CX | The structures of Capreomycin bound to the 70S ribosome. | X-RAY DIFFRACTION | 3.45 | 77 | |
| 22 | 4V5C|1|AV | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA. | X-RAY DIFFRACTION | 3.3 | 76 | |
| 23 | 4V9I|1|CV | Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon | X-RAY DIFFRACTION | 3.3 | 77 | |
| 24 | 3DEG|1|B | Complex of elongating Escherichia coli 70S ribosome and EF4(LepA)-GMPPNP | ELECTRON MICROSCOPY | 10.9 | 76 | |
| 25 | 4V51|1|AV | Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin | X-RAY DIFFRACTION | 2.8 | 76 | |
| 26 | 4V51|1|CV | Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin | X-RAY DIFFRACTION | 2.8 | 76 | |
| 27 | 4V9I|1|AV | Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon | X-RAY DIFFRACTION | 3.3 | 77 | |
| 28 | 4V7B|1|AV | Visualization of two tRNAs trapped in transit during EF-G-mediated translocation | ELECTRON MICROSCOPY | 6.8 | 76 | |
| 29 | 4V5F|1|AV | The structure of the ribosome with elongation factor G trapped in the post-translocational state | X-RAY DIFFRACTION | 3.6 | 76 | |
| 30 | 4V5F|1|CV | The structure of the ribosome with elongation factor G trapped in the post-translocational state | X-RAY DIFFRACTION | 3.6 | 76 | |
| 31 | 1VY6|1|CX | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site. | X-RAY DIFFRACTION | 2.9 | 71 | |
| 32 | 4WQY|1|DX | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid) | X-RAY DIFFRACTION | 2.8 | 72 | |
| 33 | 4WPO|1|DX | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state | X-RAY DIFFRACTION | 2.8 | 71 | |
| 34 | 1VY4|1|CX | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites. | X-RAY DIFFRACTION | 2.6 | 71 | |
| 35 | 1VY5|1|CX | Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site. | X-RAY DIFFRACTION | 2.55 | 72 | |
| 36 | 4W2G|1|CX | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites | X-RAY DIFFRACTION | 2.55 | 72 | |
| 37 | 4W2F|1|CX | Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites | X-RAY DIFFRACTION | 2.4 | 72 | |
| 38 | 4W2I|1|CX | Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites | X-RAY DIFFRACTION | 2.7 | 72 | |
| 39 | 4W2H|1|CX | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site | X-RAY DIFFRACTION | 2.7 | 72 | |
| 40 | 4V9R|1|CX | Crystal structure of antibiotic DITYROMYCIN bound to 70S ribosome | X-RAY DIFFRACTION | 3 | 76 | |
| 41 | 4V9S|1|CX | Crystal structure of antibiotic GE82832 bound to 70S ribosome | X-RAY DIFFRACTION | 3.1 | 76 | |
| 42 | 4V6A|1|CW | Structure of EF-P bound to the 70S ribosome. | X-RAY DIFFRACTION | 3.1 | 77 | |
| 43 | 4V63|1|CY | Structural basis for translation termination on the 70S ribosome. | X-RAY DIFFRACTION | 3.21 | 77 | |
| 44 | 4V63|1|AY | Structural basis for translation termination on the 70S ribosome. | X-RAY DIFFRACTION | 3.21 | 77 | |
| 45 | 4V7P|1|DW | Recognition of the amber stop codon by release factor RF1. | X-RAY DIFFRACTION | 3.62 | 77 | |
| 46 | 4V7P|1|AW | Recognition of the amber stop codon by release factor RF1. | X-RAY DIFFRACTION | 3.62 | 77 | |
| 47 | 4V67|1|AY | Crystal structure of a translation termination complex formed with release factor RF2. | X-RAY DIFFRACTION | 3 | 77 | |
| 48 | 4V67|1|CY | Crystal structure of a translation termination complex formed with release factor RF2. | X-RAY DIFFRACTION | 3 | 77 | |
| 49 | 4V8Q|1|BV | Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome | X-RAY DIFFRACTION | 3.1 | 77 | |
| 50 | 4V6A|1|AW | Structure of EF-P bound to the 70S ribosome. | X-RAY DIFFRACTION | 3.1 | 77 | |
| 51 | 4P70|1|XV | Crystal Structure of Unmodified tRNA Proline (CGG) Bound to Codon CCG on the Ribosome | X-RAY DIFFRACTION | 3.68 | 77 | |
| 52 | 4P6F|1|XV | Crystal structure of the peptolide 12C bound to bacterial ribosome | X-RAY DIFFRACTION | 3.6 | 77 | |
| 53 | 4LNT|1|XV | Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the Ribosome | X-RAY DIFFRACTION | 2.94 | 77 | |
| 54 | 4LEL|1|QV | Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCG-G on the Ribosome | X-RAY DIFFRACTION | 3.9 | 77 | |
| 55 | 4L71|1|XV | Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-A on the Ribosome | X-RAY DIFFRACTION | 3.9 | 77 | |
| 56 | 4LSK|1|XV | Crystal Structure of tRNA Proline (CGG) Bound to Codon CCG-G on the Ribosome | X-RAY DIFFRACTION | 3.48 | 77 | |
| 57 | 4LEL|1|XV | Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCG-G on the Ribosome | X-RAY DIFFRACTION | 3.9 | 77 | |
| 58 | 4LFZ|1|XV | Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U in the Absence of Paromomycin | X-RAY DIFFRACTION | 3.92 | 77 | |
| 59 | 4LSK|1|QV | Crystal Structure of tRNA Proline (CGG) Bound to Codon CCG-G on the Ribosome | X-RAY DIFFRACTION | 3.48 | 77 | |
| 60 | 4LT8|1|XV | Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-G on the Ribosome | X-RAY DIFFRACTION | 3.14 | 77 | |
| 61 | 4P6F|1|QV | Crystal structure of the peptolide 12C bound to bacterial ribosome | X-RAY DIFFRACTION | 3.6 | 77 | |
| 62 | 4LNT|1|QV | Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-U on the Ribosome | X-RAY DIFFRACTION | 2.94 | 77 | |
| 63 | 4LT8|1|QV | Crystal Structure of tRNA Proline (CGG) Bound to Codon CCC-G on the Ribosome | X-RAY DIFFRACTION | 3.14 | 77 | |
| 64 | 1VVJ|1|QV | Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome | X-RAY DIFFRACTION | 3.44 | 77 | |
| 65 | 4LFZ|1|QV | Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-U in the Absence of Paromomycin | X-RAY DIFFRACTION | 3.92 | 77 | |
| 66 | 4L71|1|QV | Crystal Structure of Frameshift Suppressor tRNA SufA6 Bound to Codon CCC-A on the Ribosome | X-RAY DIFFRACTION | 3.9 | 77 | |
| 67 | 1VVJ|1|XV | Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome | X-RAY DIFFRACTION | 3.44 | 77 | |
| 68 | 4P70|1|QV | Crystal Structure of Unmodified tRNA Proline (CGG) Bound to Codon CCG on the Ribosome | X-RAY DIFFRACTION | 3.68 | 77 | |
| 69 | 4V8J|1|AV | Crystal structure of the bacterial ribosome ram mutation G347U. | X-RAY DIFFRACTION | 3.9 | 77 | |
| 70 | 4V97|1|AV | Crystal structure of the bacterial ribosome ram mutation G299A. | X-RAY DIFFRACTION | 3.52 | 77 | |
| 71 | 4V97|1|CV | Crystal structure of the bacterial ribosome ram mutation G299A. | X-RAY DIFFRACTION | 3.52 | 77 | |
| 72 | 4V8J|1|CV | Crystal structure of the bacterial ribosome ram mutation G347U. | X-RAY DIFFRACTION | 3.9 | 77 | |
| 73 | 3J78|1|PT | Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs) | ELECTRON MICROSCOPY | 6.3 | 77 | |
| 74 | 4V6G|1|AC | Initiation complex of 70S ribosome with two tRNAs and mRNA. | X-RAY DIFFRACTION | 3.5 | 77 | |
| 75 | 3J5S|1|E | EttA binds to ribosome exit site and regulates translation by restricting ribosome and tRNA dynamics | ELECTRON MICROSCOPY | 7.5 | 77 | |
| 76 | 4V69|1|AV | Ternary complex-bound E.coli 70S ribosome. | ELECTRON MICROSCOPY | 6.7 | 76 | |
| 77 | 4V5K|1|CV | Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome | X-RAY DIFFRACTION | 3.2 | 77 | |
| 78 | 4V5C|1|CV | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA. | X-RAY DIFFRACTION | 3.3 | 76 | |
| 79 | 4V5K|1|AV | Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome | X-RAY DIFFRACTION | 3.2 | 77 | |
| 80 | 4V8D|1|AC | Structure analysis of ribosomal decoding (cognate tRNA-tyr complex). | X-RAY DIFFRACTION | 3 | 77 | |
| 81 | 4V8F|1|BC | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin). | X-RAY DIFFRACTION | 3.3 | 77 | |
| 82 | 4V8E|1|BC | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex). | X-RAY DIFFRACTION | 3.3 | 77 | |
| 83 | 4V8E|1|DC | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex). | X-RAY DIFFRACTION | 3.3 | 77 | |
| 84 | 4W2I|1|AX | Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites | X-RAY DIFFRACTION | 2.7 | 72 | |
| 85 | 1VY4|1|AX | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites. | X-RAY DIFFRACTION | 2.6 | 71 | |
| 86 | 1VY5|1|AX | Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site. | X-RAY DIFFRACTION | 2.55 | 72 | |
| 87 | 4W2G|1|AX | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites | X-RAY DIFFRACTION | 2.55 | 72 | |
| 88 | 1VY7|1|AX | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site. | X-RAY DIFFRACTION | 2.8 | 71 | |
| 89 | 1VY6|1|AX | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Puromycin in the A site and acylated tRNA in the P site. | X-RAY DIFFRACTION | 2.9 | 71 | |
| 90 | 4W2F|1|AX | Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites | X-RAY DIFFRACTION | 2.4 | 72 | |
| 91 | 4WPO|1|BX | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state | X-RAY DIFFRACTION | 2.8 | 71 | |
| 92 | 4WQY|1|BX | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the post-translocational state (without fusitic acid) | X-RAY DIFFRACTION | 2.8 | 72 | |
| 93 | 4V9S|1|AX | Crystal structure of antibiotic GE82832 bound to 70S ribosome | X-RAY DIFFRACTION | 3.1 | 76 | |
| 94 | 4V9R|1|AX | Crystal structure of antibiotic DITYROMYCIN bound to 70S ribosome | X-RAY DIFFRACTION | 3 | 76 | |
| 95 | 4W2H|1|AX | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site | X-RAY DIFFRACTION | 2.7 | 72 | |
| 96 | 4V6G|1|CC | Initiation complex of 70S ribosome with two tRNAs and mRNA. | X-RAY DIFFRACTION | 3.5 | 77 | |
| 97 | 4V8B|1|CC | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex). | X-RAY DIFFRACTION | 3 | 77 | |
| 98 | 4V87|1|CC | Crystal structure analysis of ribosomal decoding. | X-RAY DIFFRACTION | 3.1 | 77 | |
| 99 | 4V8B|1|AC | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex). | X-RAY DIFFRACTION | 3 | 77 | |
| 100 | 4V87|1|BC | Crystal structure analysis of ribosomal decoding. | X-RAY DIFFRACTION | 3.1 | 77 | |
| 101 | 4V8C|1|CC | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin). | X-RAY DIFFRACTION | 3.3 | 77 | |
| 102 | 4V8C|1|DC | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin). | X-RAY DIFFRACTION | 3.3 | 77 | |
| 103 | 4V8D|1|CC | Structure analysis of ribosomal decoding (cognate tRNA-tyr complex). | X-RAY DIFFRACTION | 3 | 77 | |
| 104 | 4V8F|1|CC | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-ttyr complex with paromomycin). | X-RAY DIFFRACTION | 3.3 | 77 | |
| 105 | 4V6Z|1|A3 | E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1b) | ELECTRON MICROSCOPY | 12 | 77 | |
| 106 | 4V6Y|1|A3 | E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1a) | ELECTRON MICROSCOPY | 12 | 72 | |
| 107 | 4V6G|1|CB | Initiation complex of 70S ribosome with two tRNAs and mRNA. | X-RAY DIFFRACTION | 3.5 | 65 | |
| 108 | 4V6G|1|AD | Initiation complex of 70S ribosome with two tRNAs and mRNA. | X-RAY DIFFRACTION | 3.5 | 77 | |
| 109 | 4V87|1|CD | Crystal structure analysis of ribosomal decoding. | X-RAY DIFFRACTION | 3.1 | 77 | |
| 110 | 4V8B|1|CD | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex). | X-RAY DIFFRACTION | 3 | 77 | |
| 111 | 4V8C|1|DD | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin). | X-RAY DIFFRACTION | 3.3 | 77 | |
| 112 | 4V8C|1|CD | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin). | X-RAY DIFFRACTION | 3.3 | 77 | |
| 113 | 4V8B|1|AD | Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex). | X-RAY DIFFRACTION | 3 | 77 | |
| 114 | 4V87|1|BD | Crystal structure analysis of ribosomal decoding. | X-RAY DIFFRACTION | 3.1 | 77 | |
| 115 | 4V6G|1|CD | Initiation complex of 70S ribosome with two tRNAs and mRNA. | X-RAY DIFFRACTION | 3.5 | 77 | |
| 116 | 4V67|1|CZ | Crystal structure of a translation termination complex formed with release factor RF2. | X-RAY DIFFRACTION | 3 | 77 | |
| 117 | 4V67|1|AZ | Crystal structure of a translation termination complex formed with release factor RF2. | X-RAY DIFFRACTION | 3 | 77 | |
| 118 | 4V63|1|AZ | Structural basis for translation termination on the 70S ribosome. | X-RAY DIFFRACTION | 3.21 | 77 | |
| 119 | 4V63|1|CZ | Structural basis for translation termination on the 70S ribosome. | X-RAY DIFFRACTION | 3.21 | 77 | |
| 120 | 4V8Q|1|BW | Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome | X-RAY DIFFRACTION | 3.1 | 77 | |
| 121 | 4V5K|1|AW | Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome | X-RAY DIFFRACTION | 3.2 | 77 | |
| 122 | 4V5K|1|CW | Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome | X-RAY DIFFRACTION | 3.2 | 77 | |
| 123 | 4V5F|1|CW | The structure of the ribosome with elongation factor G trapped in the post-translocational state | X-RAY DIFFRACTION | 3.6 | 76 | |
| 124 | 4V5F|1|AW | The structure of the ribosome with elongation factor G trapped in the post-translocational state | X-RAY DIFFRACTION | 3.6 | 76 | |
| 125 | 4V77|1|A3 | E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post2b) | ELECTRON MICROSCOPY | 17 | 72 | |
| 126 | 4V70|1|A3 | E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate pre-translocation state (pre3) | ELECTRON MICROSCOPY | 17 | 72 | |
| 127 | 4V72|1|A3 | E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre4) | ELECTRON MICROSCOPY | 13 | 72 | |
| 128 | 4V6T|1|AX | Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loading | ELECTRON MICROSCOPY | 8.3 | 77 | |
| 129 | 4V8O|1|AV | Crystal structure of the hybrid state of ribosome in complex with the guanosine triphosphatase release factor 3 | X-RAY DIFFRACTION | 3.8 | 77 | |
| 130 | 3J77|1|PT | Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class II - rotated ribosome with 1 tRNA) | ELECTRON MICROSCOPY | 6.2 | 77 | |
| 131 | 3J78|1|ET | Structures of yeast 80S ribosome-tRNA complexes in the rotated and non-rotated conformations (Class I - non-rotated ribosome with 2 tRNAs) | ELECTRON MICROSCOPY | 6.3 | 77 | |
| 132 | 3V11|1|D | Structure of the ternary initiation complex AIF2:GDPNP:methionylated initiator TRNA | X-RAY DIFFRACTION | 5 | 71 | |
| 133 | 3CW5|1|A | E. coli Initiator tRNA | X-RAY DIFFRACTION | 3.1 | 72 | |
| 134 | 3CW6|1|A | E. coli Initiator tRNA | X-RAY DIFFRACTION | 3.3 | 72 | |
| 135 | 2FMT|1|D | METHIONYL-TRNAFMET FORMYLTRANSFERASE COMPLEXED WITH FORMYL-METHIONYL-TRNAFMET | X-RAY DIFFRACTION | 2.8 | 72 | |
| 136 | 2FMT|1|C | METHIONYL-TRNAFMET FORMYLTRANSFERASE COMPLEXED WITH FORMYL-METHIONYL-TRNAFMET | X-RAY DIFFRACTION | 2.8 | 72 | |
| 137 | 3QSY|1|D | Recognition of the methionylated initiator tRNA by the translation initiation factor 2 in Archaea | X-RAY DIFFRACTION | 3.2 | 77 | |
| 138 | 1EG0|1|O | FITTING OF COMPONENTS WITH KNOWN STRUCTURE INTO AN 11.5 A CRYO-EM MAP OF THE E.COLI 70S RIBOSOME | ELECTRON MICROSCOPY | 11.5 | 71 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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