#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
17ZHG|1|2 (rep)Small subunit ribosomal RNAmRNA, rRNA 16SPyrococcus abyssi GE5ArchaeaRF01959High-resolution cryo-EM structure of Pyrococcus abyssi 30S ribosomal subunit bound to mRNA and initiator tRNA anticodon stem-loopElectron microscopy2.252022-06-29
26TH6|1|AaSmall subunit ribosomal RNA16S ribosomal RNAThermococcus kodakarensisArchaeaRF01959Cryo-EM Structure of T. kodakarensis 70S ribosomeElectron microscopy2.552020-07-29
37ZAI|1|2Small subunit ribosomal RNA16S rRNA, mRNAPyrococcus abyssi GE5ArchaeaRF01959Cryo-EM structure of a Pyrococcus abyssi 30S bound to Met-initiator tRNA, mRNA and aIF1A.Electron microscopy2.62022-07-13
46SKG|1|AaSmall subunit ribosomal RNA16S ribosomal RNAThermococcus kodakarensisArchaeaRF01959Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strainElectron microscopy2.652020-07-29
56TMF|1|ASmall subunit ribosomal RNA16S ribosomal RNAThermococcus celerArchaeaRF01959Structure of an archaeal ABCE1-bound ribosomal post-splitting complexElectron microscopy2.82020-02-12
66SKF|1|AaSmall subunit ribosomal RNA16S rRNAThermococcus kodakarensisArchaeaRF01959Cryo-EM Structure of T. kodakarensis 70S ribosomeElectron microscopy2.952020-07-29
76SWC|1|2Small subunit ribosomal RNA16S ribosomal rRNA, mRNAPyrococcus abyssiArchaeaRF01959IC2B model of cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of aIF1 in P. abyssiElectron microscopy3.32020-02-19
86SW9|1|2Small subunit ribosomal RNA16S ribosomal RNA, mRNAPyrococcus abyssiArchaeaRF01959IC2A model of cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of aIF1 in P. abyssiElectron microscopy4.22020-02-19
95JB3|1|2Small subunit ribosomal RNA16S ribosomal RNA, mRNAPyrococcus abyssiArchaeaRF01959Cryo-EM structure of a full archaeal ribosomal translation initiation complex in the P-REMOTE conformationElectron microscopy5.342016-11-30
105JBH|1|2Small subunit ribosomal RNA16S ribosomal RNA, mRNAPyrococcus abyssiArchaeaRF01959Cryo-EM structure of a full archaeal ribosomal translation initiation complex in the P-IN conformationElectron microscopy5.342016-12-07

Release history

Release3.2393.2403.241
Date2022-07-132022-07-202022-07-27

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_20.0_40313.3NR_20.0_40313.23.239(9) 5JB3|1|2, 5JBH|1|2, 6SKF|1|Aa, 6SKG|1|Aa, 6SW9|1|2, 6SWC|1|2, 6TH6|1|Aa, 6TMF|1|A, 7ZHG|1|2(1) 7ZAI|1|2(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_20.0_40313.3NR_20.0_40313.43.242(10) 5JB3|1|2, 5JBH|1|2, 6SKF|1|Aa, 6SKG|1|Aa, 6SW9|1|2, 6SWC|1|2, 6TH6|1|Aa, 6TMF|1|A, 7ZAI|1|2, 7ZHG|1|2(0) (2) 7ZAG|1|2, 7ZAH|1|2

Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.

#SViewPDBTitleMethodResolutionLength
16SW9|1|2IC2A model of cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of aIF1 in P. abyssiELECTRON MICROSCOPY4.21454
26SWC|1|2IC2B model of cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of aIF1 in P. abyssiELECTRON MICROSCOPY3.31454
37ZAI|1|2Cryo-EM structure of a Pyrococcus abyssi 30S bound to Met-initiator tRNA, mRNA and aIF1A.ELECTRON MICROSCOPY2.61429
47ZHG|1|2High-resolution cryo-EM structure of Pyrococcus abyssi 30S ribosomal subunit bound to mRNA and initiator tRNA anticodon stem-loopELECTRON MICROSCOPY2.251429
55JBH|1|2Cryo-EM structure of a full archaeal ribosomal translation initiation complex in the P-IN conformationELECTRON MICROSCOPY5.341495
65JB3|1|2Cryo-EM structure of a full archaeal ribosomal translation initiation complex in the P-REMOTE conformationELECTRON MICROSCOPY5.341495
76TMF|1|AStructure of an archaeal ABCE1-bound ribosomal post-splitting complexELECTRON MICROSCOPY2.81485
86SKG|1|AaCryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strainELECTRON MICROSCOPY2.651399
96TH6|1|AaCryo-EM Structure of T. kodakarensis 70S ribosomeELECTRON MICROSCOPY2.551439
106SKF|1|AaCryo-EM Structure of T. kodakarensis 70S ribosomeELECTRON MICROSCOPY2.951385

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.


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