Equivalence class NR_20.0_45930.2 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6CAP|1|W+ 6CAP|1|Y (rep) | RNA (5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3'), RNA (5'-R(*UP*UP*UP*UP*UP*U)-3') | Thermus thermophilus | Crystal Structure of 30S ribosomal subunit from Thermus thermophilus in complex with Sisomicin | X-ray diffraction | 3.4 | 2018-07-25 | |||
| 2 | 7DUI|1|W+ 7DUI|1|Y | RNA (5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3'), RNA (5'-R(*UP*UP*UP*UP*UP*U)-3') | Thermus thermophilus | Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N1''PyrS bound | X-ray diffraction | 3.62 | 2022-01-12 | |||
| 3 | 6CAQ|1|W+ 6CAQ|1|Y | RNA (5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3'), RNA (5'-R(*UP*UP*UP*UP*UP*U)-3') | Thermus thermophilus | Crystal Structure of 30S ribosomal subunit from Thermus thermophilus | X-ray diffraction | 3.4 | 2018-07-25 | |||
| 4 | 4DR4|1|W+ 4DR4|1|V | 5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3', 5'-R(*UP*UP*U)-3' | Thermus thermophilus | Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, cognate transfer RNA anticodon stem-loop and multiple copies of paromomycin molecules bound | X-ray diffraction | 3.97 | 2012-11-14 | |||
| 5 | 1IBL|1|Y+ 1IBL|1|Z | A-SITE MESSENGER RNA FRAGMENT, ANTICODON STEM-LOOP OF PHENYLALANINE TRANSFER RNA | STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH A MESSENGER RNA FRAGMENT AND COGNATE TRANSFER RNA ANTICODON STEM-LOOP BOUND AT THE A SITE AND WITH THE ANTIBIOTIC PAROMOMYCIN | X-ray diffraction | 3.11 | 2001-05-04 | ||||
| 6 | 6CAO|1|W+ 6CAO|1|Y | RNA (5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3'), RNA (5'-R(*UP*UP*UP*UP*UP*U)-3') | Thermus thermophilus | Structure of the ribosomal decoding complex at ambient temperature | X-ray diffraction | 3.45 | 2018-07-25 | |||
| 7 | 1IBM|1|Y+ 1IBM|1|Z | A-SITE MESSENGER RNA FRAGMENT, ANTICODON STEM-LOOP OF PHENYLALANINE TRANSFER RNA | STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH A MESSENGER RNA FRAGMENT AND COGNATE TRANSFER RNA ANTICODON STEM-LOOP BOUND AT THE A SITE | X-ray diffraction | 3.31 | 2001-05-04 | ||||
| 8 | 6CAS|1|W+ 6CAS|1|Y | RNA (5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3'), RNA (5'-R(*UP*UP*UP*UP*UP*U)-3') | Thermus thermophilus | Serial Femtosecond X-ray Crystal Structure of 30S ribosomal subunit from Thermus thermophilus in complex with N1MS | X-ray diffraction | 3.5 | 2018-07-25 | |||
| 9 | 4DR5|1|W+ 4DR5|1|V | 5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3', 5'-R(*UP*UP*U)-3' | Thermus thermophilus | Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, crystallographically disordered cognate transfer RNA anticodon stem-loop and streptomycin bound | X-ray diffraction | 3.45 | 2012-11-14 | |||
| 10 | 6CAR|1|W+ 6CAR|1|Y | RNA (5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3'), RNA (5'-R(*UP*UP*UP*UP*UP*U)-3') | Thermus thermophilus | Serial Femtosecond X-ray Crystal Structure of 30S ribosomal subunit from Thermus thermophilus in complex with Sisomicin | X-ray diffraction | 3.4 | 2018-07-25 | |||
| 11 | 4AQY|1|Z+ 4AQY|1|W | 5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3', 5'-R(*UP*UP*CP*AP*AP*AP)-3' | Thermus thermophilus | Structure of ribosome-apramycin complexes | X-ray diffraction | 3.5 | 2012-07-18 | |||
| 12 | 7DUK|1|W+ 7DUK|1|Y | RNA (5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3'), RNA (5'-R(*UP*UP*UP*UP*UP*U)-3') | Thermus thermophilus | Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N1,3''MS bound | X-ray diffraction | 3.6 | 2022-01-12 | |||
| 13 | 7DUG|1|W+ 7DUG|1|Y | RNA (5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3'), RNA (5'-R(UPUPUPUPUPU)-3') | Thermus thermophilus | Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N1''TFMS bound | X-ray diffraction | 3.75 | 2022-01-12 | |||
| 14 | 7DUJ|1|W+ 7DUJ|1|Y | RNA (5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3'), RNA (5'-R(*UP*UP*UP*UP*UP*U)-3') | Thermus thermophilus | Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N1,3''Bz bound | X-ray diffraction | 3.75 | 2022-01-12 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_20.0_45930.2 | NR_20.0_45930.1 | 3.213 | (10) 1IBL|1|Y+1IBL|1|Z, 1IBM|1|Y+1IBM|1|Z, 4AQY|1|Z+4AQY|1|W, 4DR4|1|W+4DR4|1|V, 4DR5|1|W+4DR5|1|V, 6CAO|1|W+6CAO|1|Y, 6CAP|1|W+6CAP|1|Y, 6CAQ|1|W+6CAQ|1|Y, 6CAR|1|W+6CAR|1|Y, 6CAS|1|W+6CAS|1|Y | (4) 7DUG|1|W+7DUG|1|Y, 7DUI|1|W+7DUI|1|Y, 7DUJ|1|W+7DUJ|1|Y, 7DUK|1|W+7DUK|1|Y | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_20.0_45930.2 | NR_20.0_45930.3 | 3.215 | (14) 1IBL|1|Y+1IBL|1|Z, 1IBM|1|Y+1IBM|1|Z, 4AQY|1|Z+4AQY|1|W, 4DR4|1|W+4DR4|1|V, 4DR5|1|W+4DR5|1|V, 6CAO|1|W+6CAO|1|Y, 6CAP|1|W+6CAP|1|Y, 6CAQ|1|W+6CAQ|1|Y, 6CAR|1|W+6CAR|1|Y, 6CAS|1|W+6CAS|1|Y, 7DUG|1|W+7DUG|1|Y, 7DUI|1|W+7DUI|1|Y, 7DUJ|1|W+7DUJ|1|Y, 7DUK|1|W+7DUK|1|Y | (0) | (2) 7DUH|1|W, 7DUL|1|W+7DUL|1|Y |
Instances are ordered to put similar structures near each other. Select one instance to see its 3D structure. Selecting two or more instances will show their superposition, but only chains with identical numbers of observed nucleotides will superpose well. Large structures are slow to display; this tool is not designed for that.
| #S | View | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|---|
| 1 | 4DR4|1|W+ 4DR4|1|V | Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, cognate transfer RNA anticodon stem-loop and multiple copies of paromomycin molecules bound | X-RAY DIFFRACTION | 3.97 | 15 | |
| 2 | 7DUK|1|W+ 7DUK|1|Y | Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N1,3''MS bound | X-RAY DIFFRACTION | 3.6 | 15 | |
| 3 | 7DUG|1|W+ 7DUG|1|Y | Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N1''TFMS bound | X-RAY DIFFRACTION | 3.75 | 15 | |
| 4 | 7DUI|1|W+ 7DUI|1|Y | Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N1''PyrS bound | X-RAY DIFFRACTION | 3.62 | 15 | |
| 5 | 7DUJ|1|W+ 7DUJ|1|Y | Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N1,3''Bz bound | X-RAY DIFFRACTION | 3.75 | 15 | |
| 6 | 6CAP|1|W+ 6CAP|1|Y | Crystal Structure of 30S ribosomal subunit from Thermus thermophilus in complex with Sisomicin | X-RAY DIFFRACTION | 3.4 | 15 | |
| 7 | 6CAQ|1|W+ 6CAQ|1|Y | Crystal Structure of 30S ribosomal subunit from Thermus thermophilus | X-RAY DIFFRACTION | 3.4 | 15 | |
| 8 | 6CAS|1|W+ 6CAS|1|Y | Serial Femtosecond X-ray Crystal Structure of 30S ribosomal subunit from Thermus thermophilus in complex with N1MS | X-RAY DIFFRACTION | 3.5 | 15 | |
| 9 | 6CAR|1|W+ 6CAR|1|Y | Serial Femtosecond X-ray Crystal Structure of 30S ribosomal subunit from Thermus thermophilus in complex with Sisomicin | X-RAY DIFFRACTION | 3.4 | 15 | |
| 10 | 6CAO|1|W+ 6CAO|1|Y | Structure of the ribosomal decoding complex at ambient temperature | X-RAY DIFFRACTION | 3.45 | 15 | |
| 11 | 1IBM|1|Y+ 1IBM|1|Z | STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH A MESSENGER RNA FRAGMENT AND COGNATE TRANSFER RNA ANTICODON STEM-LOOP BOUND AT THE A SITE | X-RAY DIFFRACTION | 3.31 | 11 | |
| 12 | 4DR5|1|W+ 4DR5|1|V | Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with codon, crystallographically disordered cognate transfer RNA anticodon stem-loop and streptomycin bound | X-RAY DIFFRACTION | 3.45 | 15 | |
| 13 | 1IBL|1|Y+ 1IBL|1|Z | STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH A MESSENGER RNA FRAGMENT AND COGNATE TRANSFER RNA ANTICODON STEM-LOOP BOUND AT THE A SITE AND WITH THE ANTIBIOTIC PAROMOMYCIN | X-RAY DIFFRACTION | 3.11 | 15 | |
| 14 | 4AQY|1|Z+ 4AQY|1|W | Structure of ribosome-apramycin complexes | X-RAY DIFFRACTION | 3.5 | 15 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. The ordering in the heat map is the same as in the table. The colorbar ranges from 0 to the maximum observed discrepancy. Click above the diagonal to select a range of structures, below the diagonal to select two structures.
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